Cow genome map
| Conread name: | rspc010_k18.y1 |
| Conread position: | 1-285 |
| Cow position: | chr7:11600715-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 207, 199 |
| Conread position: | 2-219 |
| Cow position: | chr7:1015244-1015460 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 86 |
| Conread position: | 2-409 |
| Cow position: | chr7:18390383-18390789 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 346, 341 |
| Conread position: | 2-534 |
| Cow position: | chr7:3180338-3180869 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 97 |
| Conread position: | 2-560 |
| Cow position: | chr7:3179834-3180392 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 198 |
| Conread position: | 2-580 |
| Cow position: | chr7:1014824-1015402 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 2-586 |
| Cow position: | chr7:1014410-1014988 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 2-588 |
| Cow position: | chr7:3180086-3180672 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 316 |
| Conread position: | 3-553 |
| Cow position: | chr7:11601133-11600583 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 197 |
| Conread position: | 3-556 |
| Cow position: | chr7:11601049-11600496 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 94 |
| Conread position: | 3-559 |
| Cow position: | chr7:3180003-3180559 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 3-560 |
| Cow position: | chr7:1014327-1014878 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 0 |
| Conread position: | 3-575 |
| Cow position: | chr7:1014657-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 197 |
| Conread position: | 7-556 |
| Cow position: | chr7:11601213-11600664 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 8-406 |
| Cow position: | chr7:1015082-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 10-407 |
| Cow position: | chr7:8243699-8244093 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 189, 194 |
| Conread position: | 10-556 |
| Cow position: | chr7:8324794-8325340 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 10-557 |
| Cow position: | chr7:8243447-8243994 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 343 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 10-580 |
| Cow position: | chr7:3179758-3180328 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 194 |
| Conread position: | 11-323 |
| Cow position: | chr7:1438395-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 11-531 |
| Cow position: | chr7:42878794-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 189 |
| Conread position: | 11-543 |
| Cow position: | chr7:3180263-3180795 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 193 |
| Conread position: | 11-548 |
| Cow position: | chr7:42878878-42878341 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 11-551 |
| Cow position: | chr7:1014917-1015457 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 6 |
| Conread position: | 11-555 |
| Cow position: | chr7:42879214-42878670 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 11-556 |
| Cow position: | chr7:8277658-8278203 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 347 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 188, 195 |
| Conread position: | 11-560 |
| Cow position: | chr7:42879046-42878497 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 189 |
| Conread position: | 11-575 |
| Cow position: | chr7:1439703-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 532, 60 |
| Conread position: | 11-587 |
| Cow position: | chr7:1439448-1440024 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 86 |
| Conread position: | 11-593 |
| Cow position: | chr7:42878962-42878380 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 11-596 |
| Cow position: | chr7:3179927-3180512 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 106 |
| Conread position: | 11-598 |
| Cow position: | chr7:42879130-42878543 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 76 |
| Conread position: | 12-551 |
| Cow position: | chr7:18390225-18390764 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 105 |
| Conread position: | 15-580 |
| Cow position: | chr7:3180185-3180748 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 7 |
| Conread position: | 23-406 |
| Cow position: | chr7:11434658-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 97, 91 |
| Conread position: | 24-490 |
| Cow position: | chr7:18390321-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 29-559 |
| Cow position: | chr7:8324729-8325259 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 29-589 |
| Cow position: | chr7:8325485-8326048 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 132 |
| Conread position: | 35-350 |
| Cow position: | chr7:8325827-8326142 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 142, 134 |
| Conread position: | 35-453 |
| Cow position: | chr7:11600849-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 165 |
| Conread position: | 35-497 |
| Cow position: | chr7:8325659-8326121 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 128 |
| Conread position: | 35-551 |
| Cow position: | chr7:8278102-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 142, 131 |
| Conread position: | 35-554 |
| Cow position: | chr7:42879274-42878755 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 384 |
| Conread position: | 35-555 |
| Cow position: | chr7:1014773-1015293 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 82 |
| Conread position: | 35-559 |
| Cow position: | chr7:8277262-8277786 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 321 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 35-560 |
| Cow position: | chr7:8242969-8243493 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 140, 163 |
| Conread position: | 35-560 |
| Cow position: | chr7:8277346-8277871 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 35-560 |
| Cow position: | chr7:8325407-8325932 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 35-560 |
| Cow position: | chr7:18390164-18390689 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 62, 46 |
| Conread position: | 35-578 |
| Cow position: | chr7:8243221-8243763 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 335 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 147, 135 |
| Conread position: | 35-595 |
| Cow position: | chr7:18389996-18390556 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 36-531 |
| Cow position: | chr7:11600932-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 36-554 |
| Cow position: | chr7:8277431-8277949 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 36-556 |
| Cow position: | chr7:8325324-8325844 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 36-580 |
| Cow position: | chr7:1014276-1014814 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 38-449 |
| Cow position: | chr7:8325746-8326160 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 161, 166 |
| Conread position: | 38-560 |
| Cow position: | chr7:8325242-8325764 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 38-575 |
| Cow position: | chr7:8277853-8278389 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 338 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 139, 128 |
| Conread position: | 38-578 |
| Cow position: | chr7:8242804-8243344 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 339 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 38-578 |
| Cow position: | chr7:8243559-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 334 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 38-580 |
| Cow position: | chr7:11434811-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 347 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 39-560 |
| Cow position: | chr7:8243392-8243913 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 42-494 |
| Cow position: | chr7:1439817-1440267 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 42 |
| Conread position: | 44-556 |
| Cow position: | chr7:18390089-18390601 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 48-587 |
| Cow position: | chr7:3179712-3180251 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 152 |
| Conread position: | 85-559 |
| Cow position: | chr7:1014655-1015129 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 120 |
| Conread position: | 95-491 |
| Cow position: | chr7:1438311-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 102, 110 |
| Conread position: | 95-597 |
| Cow position: | chr7:1439448-1439951 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 102, 110 |
| Conread position: | 103-590 |
| Cow position: | chr7:11601201-11600714 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 308 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 113-560 |
| Cow position: | chr7:8324729-8325176 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 119-560 |
| Cow position: | chr7:42879274-42878833 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 425, 420 |
| Conread position: | 120-449 |
| Cow position: | chr7:1014276-1014605 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 84, 80 |
| Conread position: | 120-560 |
| Cow position: | chr7:42879442-42879001 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 8, 81 |
| Conread position: | 147-605 |
| Cow position: | chr7:11601241-11600783 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 172-560 |
| Cow position: | chr7:1014160-1014548 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 179-560 |
| Cow position: | chr7:1438311-1438692 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 319, 310 |
| Conread position: | 181-555 |
| Cow position: | chr7:42879296-42878922 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 114, 104 |
| Conread position: | 196-556 |
| Cow position: | chr7:8324728-8325088 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 54 |
| Conread position: | 198-593 |
| Cow position: | chr7:8277258-8277651 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 61, 6 |
| Conread position: | 204-556 |
| Cow position: | chr7:1014276-1014628 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 216-594 |
| Cow position: | chr7:3179712-3180090 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.