Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 3-247 |
| Cow position: | chr10:37040602-37040832 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-319 |
| Cow position: | chr10:54126975-54127275 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-447 |
| Cow position: | chr10:22100755-22101183 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-488 |
| Cow position: | chr10:37769338-37769805 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-489 |
| Cow position: | chr10:39041793-39041322 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 3-489 |
| Cow position: | chr10:60489173-60489643 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 3-490 |
| Cow position: | chr10:10581168-10581657 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 161 |
| Conread position: | 3-490 |
| Cow position: | chr10:19143827-19143354 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 70 |
| Conread position: | 3-490 |
| Cow position: | chr10:19511126-19511590 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 3-490 |
| Cow position: | chr10:21486431-21486899 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 44 |
| Conread position: | 3-490 |
| Cow position: | chr10:25497877-25498336 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 77 |
| Conread position: | 3-490 |
| Cow position: | chr10:29847105-29846625 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 3-490 |
| Cow position: | chr10:32650253-32650717 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 4-490 |
| Cow position: | chr10:123832-124294 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 8 |
| Conread position: | 4-490 |
| Cow position: | chr10:61296810-61297311 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 219 |
| Conread position: | 7-490 |
| Cow position: | chr10:11686172-11685683 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 251 |
| Conread position: | 7-490 |
| Cow position: | chr10:55092597-55093095 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 352 |
| Conread position: | 12-487 |
| Cow position: | chr10:37060451-37060905 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 62 |
| Conread position: | 12-490 |
| Cow position: | chr10:8289490-8289967 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 65 |
| Conread position: | 12-490 |
| Cow position: | chr10:38538969-38538513 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 62 |
| Conread position: | 15-466 |
| Cow position: | chr10:38546697-38546262 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 16-489 |
| Cow position: | chr10:24299328-24298870 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 65 |
| Conread position: | 39-265 |
| Cow position: | chr10:42736049-42736270 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 46-348 |
| Cow position: | chr10:19715499-19715201 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 50-489 |
| Cow position: | chr10:57990414-57989980 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 14 |
| Conread position: | 60-275 |
| Cow position: | chr10:19497356-19497140 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 202 |
| Conread position: | 60-363 |
| Cow position: | chr10:21466812-21467112 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 22, 167 |
| Conread position: | 60-490 |
| Cow position: | chr10:281063-280635 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 213 |
| Conread position: | 60-490 |
| Cow position: | chr10:4192656-4192233 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 283 |
| Conread position: | 60-490 |
| Cow position: | chr10:14803392-14803819 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 201 |
| Conread position: | 60-490 |
| Cow position: | chr10:21401108-21400687 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 60-490 |
| Cow position: | chr10:21741192-21740767 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 60-490 |
| Cow position: | chr10:32577858-32578287 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 60-490 |
| Cow position: | chr10:39179350-39179768 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 202 |
| Conread position: | 60-490 |
| Cow position: | chr10:39817786-39817366 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 60-490 |
| Cow position: | chr10:41157013-41157432 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 224 |
| Conread position: | 60-490 |
| Cow position: | chr10:41566669-41567091 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 67 |
| Conread position: | 60-490 |
| Cow position: | chr10:41876480-41876903 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 60-490 |
| Cow position: | chr10:47906339-47906762 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 157 |
| Conread position: | 60-490 |
| Cow position: | chr10:51953045-51952621 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 61-490 |
| Cow position: | chr10:57559990-57559564 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 213 |
| Conread position: | 81-466 |
| Cow position: | chr10:14859567-14859938 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 30 |
| Conread position: | 81-490 |
| Cow position: | chr10:1375116-1375519 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 94 |
| Conread position: | 81-490 |
| Cow position: | chr10:62409272-62408871 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 9 |
| Conread position: | 81-498 |
| Cow position: | chr10:42109313-42109722 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 88-490 |
| Cow position: | chr10:25565650-25565261 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 16 |
| Conread position: | 95-490 |
| Cow position: | chr10:42747697-42748082 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 99-490 |
| Cow position: | chr10:32063753-32064130 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 103-464 |
| Cow position: | chr10:29633248-29632902 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 104-286 |
| Cow position: | chr10:183146-183329 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 92, 103 |
| Conread position: | 104-440 |
| Cow position: | chr10:34318651-34318334 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 305, 21 |
| Conread position: | 105-490 |
| Cow position: | chr10:24978531-24978147 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 170, 241 |
| Conread position: | 105-490 |
| Cow position: | chr10:39881669-39881290 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 118 |
| Conread position: | 106-319 |
| Cow position: | chr10:58377956-58377748 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 106-396 |
| Cow position: | chr10:4499321-4499592 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 106-443 |
| Cow position: | chr10:28116831-28116489 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 109 |
| Conread position: | 106-488 |
| Cow position: | chr10:46190990-46191350 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 161 |
| Conread position: | 114-307 |
| Cow position: | chr10:2123499-2123307 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 129-476 |
| Cow position: | chr10:62216234-62216577 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 136 |
| Conread position: | 134-488 |
| Cow position: | chr10:276225-276576 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 154 |
| Conread position: | 134-490 |
| Cow position: | chr10:29695879-29696221 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 129 |
| Conread position: | 136-368 |
| Cow position: | chr10:15862656-15862436 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 145-490 |
| Cow position: | chr10:54059704-54059370 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 152-306 |
| Cow position: | chr10:1938192-1938035 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 152-440 |
| Cow position: | chr10:58596156-58596437 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 153-490 |
| Cow position: | chr10:25359053-25359383 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 58 |
| Conread position: | 155-466 |
| Cow position: | chr10:34685549-34685856 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 117 |
| Conread position: | 155-490 |
| Cow position: | chr10:62777995-62778330 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 182 |
| Conread position: | 156-447 |
| Cow position: | chr10:10478476-10478202 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 253, 84 |
| Conread position: | 160-435 |
| Cow position: | chr10:49310198-49310466 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 174-466 |
| Cow position: | chr10:42628347-42628621 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 235, 64 |
| Conread position: | 175-489 |
| Cow position: | chr10:21076036-21076345 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 233, 165 |
| Conread position: | 231-439 |
| Cow position: | chr10:42663964-42664156 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 178, 34 |
| Conread position: | 240-407 |
| Cow position: | chr10:50018320-50018159 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.