Cow genome map

Conread name: rspc012_d20.y1

Conread position: 2-418
Cow position: chr11:9220872-9220466 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 125

Conread position: 3-265
Cow position: chr11:4271686-4271427 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 196, 71

Conread position: 3-310
Cow position: chr11:9607544-9607224 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 81, 233

Conread position: 3-348
Cow position: chr11:53432619-53432286 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 3-371
Cow position: chr11:24677212-24677560 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 109

Conread position: 3-439
Cow position: chr11:12092906-12093324 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 102

Conread position: 3-487
Cow position: chr11:24392477-24392945 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-488
Cow position: chr11:11987269-11987741 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-488
Cow position: chr11:28055443-28054975 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 46

Conread position: 3-490
Cow position: chr11:19103336-19102864 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr11:26125781-26125310 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 39

Conread position: 3-490
Cow position: chr11:29669476-29669006 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 68

Conread position: 3-490
Cow position: chr11:43515503-43515008 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 275

Conread position: 3-490
Cow position: chr11:44496434-44495975 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 46

Conread position: 3-490
Cow position: chr11:71328796-71329266 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 46

Conread position: 3-490
Cow position: chr11:76375316-76374857 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 3-490
Cow position: chr11:77729375-77728905 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 4-490
Cow position: chr11:37093911-37093439 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 70

Conread position: 7-490
Cow position: chr11:17108544-17108063 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 115

Conread position: 7-490
Cow position: chr11:23876458-23876927 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 67

Conread position: 7-490
Cow position: chr11:53288320-53287832 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 120

Conread position: 7-490
Cow position: chr11:57628920-57628424 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 281

Conread position: 12-488
Cow position: chr11:72110800-72110340 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 396, 62

Conread position: 14-490
Cow position: chr11:8243865-8244328 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 328
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 233, 41

Conread position: 15-288
Cow position: chr11:7112610-7112879 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 67, 49

Conread position: 15-450
Cow position: chr11:52462234-52462690 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 263

Conread position: 15-488
Cow position: chr11:28062840-28063311 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 115

Conread position: 15-488
Cow position: chr11:54208780-54209239 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 34

Conread position: 15-490
Cow position: chr11:8262540-8262077 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 53

Conread position: 16-347
Cow position: chr11:7394279-7394597 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 226
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 64, 76

Conread position: 17-443
Cow position: chr11:33044954-33044545 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 277
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 52, 32

Conread position: 45-490
Cow position: chr11:41171504-41171070 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 19

Conread position: 50-334
Cow position: chr11:81853402-81853119 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 33, 10

Conread position: 50-490
Cow position: chr11:38836230-38835794 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 50-490
Cow position: chr11:58133543-58133992 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 24

Conread position: 55-489
Cow position: chr11:37477925-37477498 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 72

Conread position: 55-490
Cow position: chr11:19065066-19064627 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 224

Conread position: 56-380
Cow position: chr11:24242637-24242960 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 217
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 8, 17

Conread position: 60-369
Cow position: chr11:45110332-45110634 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 29, 140

Conread position: 60-459
Cow position: chr11:4041864-4041475 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 265
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 208, 0

Conread position: 60-459
Cow position: chr11:9736750-9736361 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 202

Conread position: 60-490
Cow position: chr11:3492210-3492633 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 196

Conread position: 60-490
Cow position: chr11:15982841-15983246 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 290
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 22, 196

Conread position: 60-490
Cow position: chr11:20921551-20921123 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 171

Conread position: 60-490
Cow position: chr11:28230547-28230126 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 196

Conread position: 60-490
Cow position: chr11:32450064-32450490 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 112

Conread position: 60-490
Cow position: chr11:36744982-36744558 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 220

Conread position: 60-490
Cow position: chr11:67449690-67450120 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 200

Conread position: 60-490
Cow position: chr11:67847370-67846946 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 66

Conread position: 63-490
Cow position: chr11:52418592-52419010 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 5

Conread position: 71-383
Cow position: chr11:17925356-17925053 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 213
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 23, 10

Conread position: 81-490
Cow position: chr11:9158201-9157803 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 191

Conread position: 81-490
Cow position: chr11:12359202-12358799 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 126

Conread position: 81-490
Cow position: chr11:85394592-85394188 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 197

Conread position: 84-487
Cow position: chr11:4028331-4027931 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 182

Conread position: 94-466
Cow position: chr11:9660172-9659801 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 186

Conread position: 94-490
Cow position: chr11:34020140-34020524 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 30

Conread position: 95-490
Cow position: chr11:10846678-10847067 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 18

Conread position: 97-440
Cow position: chr11:13581742-13581403 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 236
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 19, 8

Conread position: 104-299
Cow position: chr11:3237787-3237978 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 104-490
Cow position: chr11:7687155-7687541 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 37

Conread position: 105-441
Cow position: chr11:49076419-49076102 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 304, 32

Conread position: 106-457
Cow position: chr11:10210717-10210381 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 94

Conread position: 114-490
Cow position: chr11:44157990-44157613 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 158

Conread position: 114-490
Cow position: chr11:63660334-63659959 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 229

Conread position: 115-490
Cow position: chr11:43731676-43732033 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 249
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 8, 23

Conread position: 118-490
Cow position: chr11:11126180-11126537 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 253
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 31, 68

Conread position: 122-485
Cow position: chr11:40777474-40777113 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 83

Conread position: 129-490
Cow position: chr11:87127108-87127466 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 233
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 160

Conread position: 129-498
Cow position: chr11:42428600-42428967 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 254
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 95, 25

Conread position: 132-371
Cow position: chr11:44507441-44507672 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 136, 0

Conread position: 132-396
Cow position: chr11:66725779-66726024 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 133-490
Cow position: chr11:29234372-29234026 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 244
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 68, 74

Conread position: 137-335
Cow position: chr11:45547788-45547981 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 137-403
Cow position: chr11:50837288-50837548 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 106, 117

Conread position: 137-437
Cow position: chr11:8887877-8887580 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 134

Conread position: 138-440
Cow position: chr11:30184014-30183716 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 74, 7

Conread position: 141-425
Cow position: chr11:33195335-33195061 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 268, 131

Conread position: 146-488
Cow position: chr11:31414952-31414616 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 6

Conread position: 148-424
Cow position: chr11:32071396-32071671 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 185
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 71, 111

Conread position: 148-457
Cow position: chr11:30125950-30125657 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 260, 84

Conread position: 149-404
Cow position: chr11:43009513-43009765 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 194, 30

Conread position: 151-444
Cow position: chr11:65162248-65161961 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 22, 118

Conread position: 155-490
Cow position: chr11:15998183-15998517 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 200

Conread position: 155-490
Cow position: chr11:25526868-25527195 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 112, 183

Conread position: 155-490
Cow position: chr11:37492353-37492026 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 117

Conread position: 162-490
Cow position: chr11:21466381-21466699 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 103

Conread position: 165-485
Cow position: chr11:7073162-7072853 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 243, 50

Conread position: 165-490
Cow position: chr11:30304568-30304864 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 248, 98

Conread position: 165-490
Cow position: chr11:44861226-44860902 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 115

Conread position: 174-443
Cow position: chr11:17220895-17220632 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 197, 94

Conread position: 194-447
Cow position: chr11:17280905-17280661 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 15, 87

Conread position: 196-440
Cow position: chr11:36761427-36761666 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 161
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 212, 83

Conread position: 221-466
Cow position: chr11:12351706-12351465 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 57

Conread position: 269-490
Cow position: chr11:4271462-4271247 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 140, 39

Conread position: 305-466
Cow position: chr11:7113041-7113198 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 0

Show alignments to all cow chromosomes.