Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 3-417 |
| Cow position: | chr13:35029712-35030127 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 81, 269 |
| Conread position: | 3-488 |
| Cow position: | chr13:4940301-4940773 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 66 |
| Conread position: | 3-489 |
| Cow position: | chr13:30302288-30302753 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 46 |
| Conread position: | 3-490 |
| Cow position: | chr13:3655091-3654622 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 70 |
| Conread position: | 3-490 |
| Cow position: | chr13:9043748-9044199 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 46 |
| Conread position: | 3-490 |
| Cow position: | chr13:15925167-15924696 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr13:31613119-31612647 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 3-490 |
| Cow position: | chr13:34187471-34186999 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 123 |
| Conread position: | 3-490 |
| Cow position: | chr13:54283807-54284269 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 126 |
| Conread position: | 4-488 |
| Cow position: | chr13:1593938-1593467 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 70 |
| Conread position: | 4-490 |
| Cow position: | chr13:6668925-6668435 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 268 |
| Conread position: | 7-490 |
| Cow position: | chr13:34326472-34325989 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 158 |
| Conread position: | 12-490 |
| Cow position: | chr13:2297599-2297110 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 177 |
| Conread position: | 12-490 |
| Cow position: | chr13:15521298-15520825 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 47 |
| Conread position: | 12-490 |
| Cow position: | chr13:30245534-30245045 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 274 |
| Conread position: | 15-490 |
| Cow position: | chr13:20543138-20542679 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 16-270 |
| Cow position: | chr13:33279121-33278868 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 16-432 |
| Cow position: | chr13:48356553-48356953 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 72 |
| Conread position: | 50-407 |
| Cow position: | chr13:15542719-15543070 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 50-488 |
| Cow position: | chr13:33337069-33336641 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 50-490 |
| Cow position: | chr13:4481736-4482159 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 14 |
| Conread position: | 50-490 |
| Cow position: | chr13:32544207-32544629 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 50-490 |
| Cow position: | chr13:34043109-34042676 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 60-296 |
| Cow position: | chr13:49972976-49973214 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 215 |
| Conread position: | 60-311 |
| Cow position: | chr13:676228-676477 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 60-364 |
| Cow position: | chr13:53834033-53834334 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 168 |
| Conread position: | 60-456 |
| Cow position: | chr13:2389535-2389150 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 22, 280 |
| Conread position: | 60-488 |
| Cow position: | chr13:17307746-17308161 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 60-490 |
| Cow position: | chr13:4872339-4872765 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 169 |
| Conread position: | 60-490 |
| Cow position: | chr13:21840935-21840506 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 283 |
| Conread position: | 60-490 |
| Cow position: | chr13:31734811-31734392 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 200 |
| Conread position: | 60-490 |
| Cow position: | chr13:34868032-34868461 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 207 |
| Conread position: | 62-458 |
| Cow position: | chr13:50108730-50109120 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 68-490 |
| Cow position: | chr13:35756505-35756929 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 75 |
| Conread position: | 74-443 |
| Cow position: | chr13:30140275-30140635 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 182, 6 |
| Conread position: | 80-489 |
| Cow position: | chr13:32986762-32986362 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 119 |
| Conread position: | 81-490 |
| Cow position: | chr13:32738525-32738132 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 131 |
| Conread position: | 94-490 |
| Cow position: | chr13:34692460-34692851 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 95-424 |
| Cow position: | chr13:31560492-31560812 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 170, 19 |
| Conread position: | 106-490 |
| Cow position: | chr13:46733036-46732666 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 365, 162 |
| Conread position: | 115-488 |
| Cow position: | chr13:30237496-30237860 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 129-320 |
| Cow position: | chr13:41607045-41607226 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 134-464 |
| Cow position: | chr13:30657625-30657302 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 144 |
| Conread position: | 134-490 |
| Cow position: | chr13:62328243-62327895 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 117 |
| Conread position: | 138-328 |
| Cow position: | chr13:61951536-61951720 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 139-490 |
| Cow position: | chr13:34936480-34936833 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 127 |
| Conread position: | 145-463 |
| Cow position: | chr13:2909095-2908787 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 145-466 |
| Cow position: | chr13:31831956-31832266 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 84 |
| Conread position: | 147-490 |
| Cow position: | chr13:34912015-34911684 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 118 |
| Conread position: | 149-490 |
| Cow position: | chr13:2232008-2232348 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 155-487 |
| Cow position: | chr13:34143302-34142972 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 189 |
| Conread position: | 155-490 |
| Cow position: | chr13:3276516-3276846 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 109 |
| Conread position: | 155-490 |
| Cow position: | chr13:33825380-33825041 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 190 |
| Conread position: | 155-490 |
| Cow position: | chr13:33928189-33927874 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 31 |
| Conread position: | 172-466 |
| Cow position: | chr13:13046446-13046158 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 100 |
| Conread position: | 174-490 |
| Cow position: | chr13:3058617-3058304 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 109 |
Show alignments to all cow chromosomes.