Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 2-490 |
| Cow position: | chr14:37222993-37223467 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 47 |
| Conread position: | 3-348 |
| Cow position: | chr14:46463888-46464216 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 3-441 |
| Cow position: | chr14:45916474-45916914 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 127 |
| Conread position: | 3-457 |
| Cow position: | chr14:44376517-44376967 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 199 |
| Conread position: | 3-490 |
| Cow position: | chr14:11155061-11154590 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr14:13302120-13302595 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 71 |
| Conread position: | 3-490 |
| Cow position: | chr14:17684495-17684960 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr14:20781551-20782021 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr14:38533214-38532730 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 75 |
| Conread position: | 3-490 |
| Cow position: | chr14:45833256-45833725 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 3-490 |
| Cow position: | chr14:48255220-48254746 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 71 |
| Conread position: | 4-348 |
| Cow position: | chr14:2283053-2283413 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 80, 285 |
| Conread position: | 4-466 |
| Cow position: | chr14:44685122-44685589 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 4-489 |
| Cow position: | chr14:7471469-7471938 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 70 |
| Conread position: | 7-457 |
| Cow position: | chr14:46083724-46084156 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 7-490 |
| Cow position: | chr14:5528163-5528626 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 67 |
| Conread position: | 7-490 |
| Cow position: | chr14:22032582-22032121 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 67 |
| Conread position: | 8-381 |
| Cow position: | chr14:44551145-44551510 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 5 |
| Conread position: | 12-490 |
| Cow position: | chr14:30597305-30596816 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 335 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 72, 280 |
| Conread position: | 14-490 |
| Cow position: | chr14:13272357-13272823 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 66 |
| Conread position: | 15-365 |
| Cow position: | chr14:50134008-50134349 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 74, 149 |
| Conread position: | 15-464 |
| Cow position: | chr14:35388033-35387591 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 131 |
| Conread position: | 25-488 |
| Cow position: | chr14:45159966-45160427 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 242 |
| Conread position: | 34-466 |
| Cow position: | chr14:44225533-44225950 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 95 |
| Conread position: | 38-466 |
| Cow position: | chr14:44780787-44780376 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 38-466 |
| Cow position: | chr14:44783127-44782716 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 45-490 |
| Cow position: | chr14:40338831-40339271 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 172 |
| Conread position: | 50-490 |
| Cow position: | chr14:17001918-17001490 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 14 |
| Conread position: | 50-490 |
| Cow position: | chr14:28994729-28994290 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 216 |
| Conread position: | 60-296 |
| Cow position: | chr14:10561769-10562005 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 213 |
| Conread position: | 60-335 |
| Cow position: | chr14:17241378-17241647 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 196 |
| Conread position: | 60-489 |
| Cow position: | chr14:17492314-17491893 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 60-490 |
| Cow position: | chr14:9044704-9045130 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 81 |
| Conread position: | 60-490 |
| Cow position: | chr14:45672906-45672480 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 60-491 |
| Cow position: | chr14:749714-750135 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 68-488 |
| Cow position: | chr14:45205209-45205634 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 21 |
| Conread position: | 74-490 |
| Cow position: | chr14:19329114-19328704 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 189 |
| Conread position: | 81-447 |
| Cow position: | chr14:50109739-50110103 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 120 |
| Conread position: | 81-490 |
| Cow position: | chr14:16274138-16273731 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 256 |
| Conread position: | 81-490 |
| Cow position: | chr14:41755032-41755426 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 29, 135 |
| Conread position: | 92-488 |
| Cow position: | chr14:35928347-35928738 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 117, 217 |
| Conread position: | 94-466 |
| Cow position: | chr14:44856258-44855884 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 94-488 |
| Cow position: | chr14:16920513-16920126 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 95-487 |
| Cow position: | chr14:48150769-48150389 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 99-437 |
| Cow position: | chr14:44261910-44261567 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 135, 10 |
| Conread position: | 104-348 |
| Cow position: | chr14:44580130-44580367 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 104-443 |
| Cow position: | chr14:31607737-31607402 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 54 |
| Conread position: | 104-445 |
| Cow position: | chr14:22018584-22018924 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 245 |
| Conread position: | 105-423 |
| Cow position: | chr14:41407046-41407346 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 106-482 |
| Cow position: | chr14:40170495-40170124 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 159, 201 |
| Conread position: | 115-481 |
| Cow position: | chr14:11467792-11468160 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 116-326 |
| Cow position: | chr14:38145833-38146042 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 121-409 |
| Cow position: | chr14:14309859-14309576 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 125-369 |
| Cow position: | chr14:15277654-15277408 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 127-424 |
| Cow position: | chr14:41670938-41671236 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 127-490 |
| Cow position: | chr14:29048689-29048337 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 129-375 |
| Cow position: | chr14:14422800-14422561 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 129-488 |
| Cow position: | chr14:43552628-43552983 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 79 |
| Conread position: | 132-490 |
| Cow position: | chr14:23256567-23256924 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 214 |
| Conread position: | 133-447 |
| Cow position: | chr14:45079748-45080056 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 275, 146 |
| Conread position: | 145-490 |
| Cow position: | chr14:13660769-13660424 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 209 |
| Conread position: | 147-440 |
| Cow position: | chr14:34774827-34775109 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 147-490 |
| Cow position: | chr14:48703832-48704163 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 150-490 |
| Cow position: | chr14:45712751-45712412 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 100 |
| Conread position: | 152-365 |
| Cow position: | chr14:1499983-1500193 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 152-489 |
| Cow position: | chr14:47623801-47624133 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 155-408 |
| Cow position: | chr14:41085574-41085330 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 155-490 |
| Cow position: | chr14:36967491-36967819 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 155-490 |
| Cow position: | chr14:44130161-44130483 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 72 |
| Conread position: | 156-490 |
| Cow position: | chr14:45850462-45850790 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 108 |
| Conread position: | 159-462 |
| Cow position: | chr14:23690989-23690688 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 192 |
| Conread position: | 160-490 |
| Cow position: | chr14:45767247-45767571 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 22 |
| Conread position: | 173-373 |
| Cow position: | chr14:13326858-13326663 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 176-490 |
| Cow position: | chr14:7831280-7830975 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 46 |
| Conread position: | 177-418 |
| Cow position: | chr14:13778119-13778357 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 231, 88 |
| Conread position: | 211-490 |
| Cow position: | chr14:44421847-44422120 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 71 |
| Conread position: | 231-461 |
| Cow position: | chr14:12608528-12608743 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 179, 37 |
| Conread position: | 259-490 |
| Cow position: | chr14:33394443-33394211 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 84 |
| Conread position: | 293-490 |
| Cow position: | chr14:42151694-42151887 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 116, 54 |
Show alignments to all cow chromosomes.