Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 3-277 |
| Cow position: | chr16:51083317-51083583 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 3-334 |
| Cow position: | chr16:39818382-39818692 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 3-335 |
| Cow position: | chr16:14667041-14666721 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 3-456 |
| Cow position: | chr16:29031662-29032100 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 108 |
| Conread position: | 3-457 |
| Cow position: | chr16:32934885-32935322 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 214 |
| Conread position: | 3-467 |
| Cow position: | chr16:408285-407836 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 64 |
| Conread position: | 3-476 |
| Cow position: | chr16:1429965-1430430 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 90 |
| Conread position: | 3-482 |
| Cow position: | chr16:9776884-9777342 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-488 |
| Cow position: | chr16:49236372-49235897 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 3-490 |
| Cow position: | chr16:2484390-2483920 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 46 |
| Conread position: | 3-490 |
| Cow position: | chr16:7676947-7676479 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 65 |
| Conread position: | 3-490 |
| Cow position: | chr16:8817358-8816886 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr16:10204669-10204198 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr16:12539176-12538705 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr16:29045778-29046240 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 3-490 |
| Cow position: | chr16:29676549-29676086 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 79 |
| Conread position: | 3-490 |
| Cow position: | chr16:40297426-40296956 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 4-298 |
| Cow position: | chr16:42051598-42051312 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 78, 108 |
| Conread position: | 4-466 |
| Cow position: | chr16:19714090-19713653 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 78 |
| Conread position: | 7-490 |
| Cow position: | chr16:5660592-5661080 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 263 |
| Conread position: | 7-490 |
| Cow position: | chr16:16687618-16688089 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 86 |
| Conread position: | 10-440 |
| Cow position: | chr16:55112102-55111678 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 10-490 |
| Cow position: | chr16:18688376-18687902 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 209 |
| Conread position: | 12-490 |
| Cow position: | chr16:31486-31967 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 278 |
| Conread position: | 12-490 |
| Cow position: | chr16:43898512-43898049 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 62 |
| Conread position: | 15-490 |
| Cow position: | chr16:25084376-25084840 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 114 |
| Conread position: | 16-462 |
| Cow position: | chr16:36232842-36232413 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 16-490 |
| Cow position: | chr16:4303736-4303252 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 271 |
| Conread position: | 16-490 |
| Cow position: | chr16:25340725-25341187 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 33-490 |
| Cow position: | chr16:25458706-25458253 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 13 |
| Conread position: | 46-490 |
| Cow position: | chr16:23253719-23253286 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 18 |
| Conread position: | 50-466 |
| Cow position: | chr16:25440400-25440814 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 14 |
| Conread position: | 50-466 |
| Cow position: | chr16:40887479-40887059 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 294 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 50-488 |
| Cow position: | chr16:2728531-2728097 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 50-490 |
| Cow position: | chr16:15183590-15184022 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 60-439 |
| Cow position: | chr16:21185073-21185448 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 22, 201 |
| Conread position: | 60-487 |
| Cow position: | chr16:10376471-10376057 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 146 |
| Conread position: | 60-490 |
| Cow position: | chr16:5918273-5918704 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 172 |
| Conread position: | 60-490 |
| Cow position: | chr16:6942414-6942842 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 224 |
| Conread position: | 60-490 |
| Cow position: | chr16:32605617-32606047 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 60-491 |
| Cow position: | chr16:28171568-28171140 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 68-466 |
| Cow position: | chr16:9929361-9929741 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 340, 13 |
| Conread position: | 70-490 |
| Cow position: | chr16:25157410-25157001 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 70-490 |
| Cow position: | chr16:51685254-51685654 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 75-489 |
| Cow position: | chr16:28472290-28471877 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 192 |
| Conread position: | 81-236 |
| Cow position: | chr16:37446533-37446384 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 81-486 |
| Cow position: | chr16:15565566-15565965 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 55 |
| Conread position: | 81-489 |
| Cow position: | chr16:15491535-15491926 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 51 |
| Conread position: | 81-490 |
| Cow position: | chr16:1568633-1568236 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 126 |
| Conread position: | 81-490 |
| Cow position: | chr16:24881873-24881472 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 84-490 |
| Cow position: | chr16:5888321-5888701 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 324, 31 |
| Conread position: | 91-489 |
| Cow position: | chr16:54647152-54647545 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 96-489 |
| Cow position: | chr16:31593077-31592687 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 183 |
| Conread position: | 98-320 |
| Cow position: | chr16:5648072-5648290 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 99 |
| Conread position: | 102-321 |
| Cow position: | chr16:5589035-5589251 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 163, 178 |
| Conread position: | 104-418 |
| Cow position: | chr16:29982111-29982416 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 68, 163 |
| Conread position: | 104-464 |
| Cow position: | chr16:44964887-44965251 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 105-276 |
| Cow position: | chr16:45568929-45569097 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 160, 110 |
| Conread position: | 105-490 |
| Cow position: | chr16:49257733-49257365 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 115-478 |
| Cow position: | chr16:2239878-2239526 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 293, 17 |
| Conread position: | 116-382 |
| Cow position: | chr16:15369290-15369544 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 129-478 |
| Cow position: | chr16:25152641-25152981 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 136-481 |
| Cow position: | chr16:41559553-41559880 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 141, 43 |
| Conread position: | 136-488 |
| Cow position: | chr16:26518125-26517790 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 277, 74 |
| Conread position: | 137-443 |
| Cow position: | chr16:27004249-27004540 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 40 |
| Conread position: | 145-490 |
| Cow position: | chr16:14669171-14669511 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 106, 146 |
| Conread position: | 145-490 |
| Cow position: | chr16:20255429-20255091 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 127 |
| Conread position: | 145-490 |
| Cow position: | chr16:26662630-26662967 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 147-435 |
| Cow position: | chr16:14422596-14422881 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 114, 78 |
| Conread position: | 147-447 |
| Cow position: | chr16:10437137-10437431 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 117 |
| Conread position: | 150-490 |
| Cow position: | chr16:42740533-42740200 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 20 |
| Conread position: | 152-321 |
| Cow position: | chr16:31376342-31376181 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 155-462 |
| Cow position: | chr16:11052061-11052359 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 110 |
| Conread position: | 155-488 |
| Cow position: | chr16:7905531-7905861 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 117 |
| Conread position: | 155-490 |
| Cow position: | chr16:6549633-6549304 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 117 |
| Conread position: | 158-494 |
| Cow position: | chr16:47562587-47562909 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 251, 52 |
| Conread position: | 162-488 |
| Cow position: | chr16:36282291-36282617 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 189 |
| Conread position: | 169-490 |
| Cow position: | chr16:23982213-23982531 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 96 |
| Conread position: | 170-328 |
| Cow position: | chr16:5483419-5483264 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 170-490 |
| Cow position: | chr16:27734902-27734585 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 95 |
| Conread position: | 172-490 |
| Cow position: | chr16:52815710-52815416 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 248-443 |
| Cow position: | chr16:10808146-10808336 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 254-490 |
| Cow position: | chr16:2411983-2411752 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 154, 24 |
| Conread position: | 298-464 |
| Cow position: | chr16:36362318-36362156 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 98, 38 |
Show alignments to all cow chromosomes.