Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 3-385 |
| Cow position: | chr17:6259031-6259392 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 368, 71 |
| Conread position: | 3-490 |
| Cow position: | chr17:4059424-4059899 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 41 |
| Conread position: | 3-490 |
| Cow position: | chr17:11088414-11087928 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 3-490 |
| Cow position: | chr17:13857462-13856973 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 3-490 |
| Cow position: | chr17:16860248-16859760 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 19 |
| Conread position: | 3-490 |
| Cow position: | chr17:18104357-18103884 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 3-490 |
| Cow position: | chr17:40803716-40804193 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 71 |
| Conread position: | 4-490 |
| Cow position: | chr17:6089828-6089365 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 80, 103 |
| Conread position: | 7-489 |
| Cow position: | chr17:228995-228507 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 234 |
| Conread position: | 7-490 |
| Cow position: | chr17:2249257-2248785 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 35 |
| Conread position: | 12-335 |
| Cow position: | chr17:180929-181261 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 15-487 |
| Cow position: | chr17:15370421-15370870 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 111 |
| Conread position: | 18-489 |
| Cow position: | chr17:153122-152677 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 28-490 |
| Cow position: | chr17:13929013-13929464 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 37-373 |
| Cow position: | chr17:31200714-31200387 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 38-466 |
| Cow position: | chr17:4081002-4081421 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 39-490 |
| Cow position: | chr17:3643486-3643040 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 25 |
| Conread position: | 49-489 |
| Cow position: | chr17:249286-249710 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 231 |
| Conread position: | 50-488 |
| Cow position: | chr17:19269986-19269572 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 94 |
| Conread position: | 60-466 |
| Cow position: | chr17:15157583-15157189 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 67 |
| Conread position: | 60-490 |
| Cow position: | chr17:1383443-1383018 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 224 |
| Conread position: | 60-490 |
| Cow position: | chr17:8208478-8208903 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 221 |
| Conread position: | 60-490 |
| Cow position: | chr17:9654081-9653660 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 213 |
| Conread position: | 60-490 |
| Cow position: | chr17:11782739-11783167 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 60-490 |
| Cow position: | chr17:14217657-14217228 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 214 |
| Conread position: | 60-490 |
| Cow position: | chr17:15143992-15143573 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 140 |
| Conread position: | 60-490 |
| Cow position: | chr17:20666352-20665930 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 60-490 |
| Cow position: | chr17:22160284-22160712 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 167 |
| Conread position: | 60-490 |
| Cow position: | chr17:24633325-24633750 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 167 |
| Conread position: | 60-490 |
| Cow position: | chr17:24780420-24780844 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 60-490 |
| Cow position: | chr17:43987888-43988331 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 22, 295 |
| Conread position: | 61-346 |
| Cow position: | chr17:6119520-6119805 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 21, 200 |
| Conread position: | 62-489 |
| Cow position: | chr17:2261487-2261905 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 200 |
| Conread position: | 81-490 |
| Cow position: | chr17:2578955-2579354 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 78 |
| Conread position: | 81-490 |
| Cow position: | chr17:14893555-14893957 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 44 |
| Conread position: | 81-490 |
| Cow position: | chr17:15322221-15322609 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 82-490 |
| Cow position: | chr17:14326108-14325700 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 85-440 |
| Cow position: | chr17:2146608-2146949 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 91-466 |
| Cow position: | chr17:2286769-2287161 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 189 |
| Conread position: | 102-326 |
| Cow position: | chr17:12670924-12670704 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 154 |
| Conread position: | 105-275 |
| Cow position: | chr17:3710783-3710613 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 146, 152 |
| Conread position: | 105-464 |
| Cow position: | chr17:20401093-20401453 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 139, 38 |
| Conread position: | 114-488 |
| Cow position: | chr17:25737087-25737457 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 151 |
| Conread position: | 118-488 |
| Cow position: | chr17:39933115-39933476 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 185 |
| Conread position: | 121-439 |
| Cow position: | chr17:2587750-2588076 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 238 |
| Conread position: | 127-443 |
| Cow position: | chr17:19609463-19609159 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 163 |
| Conread position: | 127-490 |
| Cow position: | chr17:23857611-23857240 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 134-385 |
| Cow position: | chr17:22131384-22131632 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 134-440 |
| Cow position: | chr17:1284313-1284013 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 97 |
| Conread position: | 137-326 |
| Cow position: | chr17:18302322-18302139 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 137-490 |
| Cow position: | chr17:15435241-15435587 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 124 |
| Conread position: | 139-408 |
| Cow position: | chr17:32024747-32024483 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 144-490 |
| Cow position: | chr17:28109549-28109880 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 110 |
| Conread position: | 145-488 |
| Cow position: | chr17:22430024-22429688 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 79 |
| Conread position: | 146-368 |
| Cow position: | chr17:55224-55009 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 147-488 |
| Cow position: | chr17:14308849-14308508 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 79 |
| Conread position: | 155-466 |
| Cow position: | chr17:44853459-44853162 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 198, 44 |
| Conread position: | 155-490 |
| Cow position: | chr17:16889595-16889919 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 63 |
| Conread position: | 155-490 |
| Cow position: | chr17:27345272-27345601 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 126 |
| Conread position: | 168-490 |
| Cow position: | chr17:35591702-35592011 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 241, 37 |
| Conread position: | 174-312 |
| Cow position: | chr17:1945661-1945798 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 193-393 |
| Cow position: | chr17:20088253-20088050 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 136, 155 |
| Conread position: | 223-490 |
| Cow position: | chr17:1879624-1879888 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 76, 55 |
| Conread position: | 226-490 |
| Cow position: | chr17:2737914-2738174 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 185, 56 |
| Conread position: | 278-462 |
| Cow position: | chr17:20183640-20183459 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 287-490 |
| Cow position: | chr17:18185928-18185728 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 120, 20 |
Show alignments to all cow chromosomes.