Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 2-489 |
| Cow position: | chr18:37504596-37505066 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 72 |
| Conread position: | 3-381 |
| Cow position: | chr18:14129826-14130188 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-457 |
| Cow position: | chr18:54024836-54024379 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 279 |
| Conread position: | 3-490 |
| Cow position: | chr18:16177082-16176609 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 40 |
| Conread position: | 3-490 |
| Cow position: | chr18:16660478-16660001 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 3-490 |
| Cow position: | chr18:28974366-28973899 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr18:33335397-33335872 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 126 |
| Conread position: | 3-490 |
| Cow position: | chr18:41841294-41840821 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 69 |
| Conread position: | 3-490 |
| Cow position: | chr18:51480371-51480842 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 70 |
| Conread position: | 4-490 |
| Cow position: | chr18:23797184-23797651 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 7-489 |
| Cow position: | chr18:11275580-11275103 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 337 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 12-314 |
| Cow position: | chr18:29236307-29236609 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 254 |
| Conread position: | 13-491 |
| Cow position: | chr18:27838768-27838298 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 15-490 |
| Cow position: | chr18:36507876-36508337 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 52 |
| Conread position: | 38-493 |
| Cow position: | chr18:45958263-45958690 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 50-490 |
| Cow position: | chr18:25349609-25350043 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 14 |
| Conread position: | 60-487 |
| Cow position: | chr18:47741594-47742019 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 213 |
| Conread position: | 60-490 |
| Cow position: | chr18:16078281-16078703 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 60-490 |
| Cow position: | chr18:19351953-19352389 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 299 |
| Conread position: | 60-490 |
| Cow position: | chr18:37586087-37585660 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 60-490 |
| Cow position: | chr18:44621334-44621763 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 60-490 |
| Cow position: | chr18:51660003-51660421 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 60-490 |
| Cow position: | chr18:55089348-55088921 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 67-400 |
| Cow position: | chr18:54002087-54002405 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 155 |
| Conread position: | 76-490 |
| Cow position: | chr18:9187168-9186763 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 89-277 |
| Cow position: | chr18:42244937-42244755 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 94-490 |
| Cow position: | chr18:39748189-39748580 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 103-489 |
| Cow position: | chr18:32293393-32293774 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 114-490 |
| Cow position: | chr18:54172212-54171841 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 128-490 |
| Cow position: | chr18:14415624-14415980 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 137 |
| Conread position: | 134-465 |
| Cow position: | chr18:23944720-23944392 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 147 |
| Conread position: | 134-490 |
| Cow position: | chr18:43147274-43146922 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 213 |
| Conread position: | 138-439 |
| Cow position: | chr18:29899982-29900271 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 123 |
| Conread position: | 138-486 |
| Cow position: | chr18:48301684-48301347 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 271, 90 |
| Conread position: | 138-487 |
| Cow position: | chr18:40193280-40193618 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 97 |
| Conread position: | 145-314 |
| Cow position: | chr18:53785144-53785315 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 122, 13 |
| Conread position: | 145-490 |
| Cow position: | chr18:51257647-51257981 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 147-422 |
| Cow position: | chr18:47719905-47719633 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 135, 193 |
| Conread position: | 152-440 |
| Cow position: | chr18:33268513-33268795 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 47 |
| Conread position: | 152-490 |
| Cow position: | chr18:51310256-51310584 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 112 |
| Conread position: | 153-490 |
| Cow position: | chr18:22602157-22602491 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 74 |
| Conread position: | 155-466 |
| Cow position: | chr18:48221551-48221857 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 44 |
| Conread position: | 155-490 |
| Cow position: | chr18:2020009-2019682 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 135 |
| Conread position: | 155-490 |
| Cow position: | chr18:33358537-33358871 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 126 |
| Conread position: | 159-490 |
| Cow position: | chr18:1520804-1521135 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 108 |
| Conread position: | 164-490 |
| Cow position: | chr18:40478066-40478391 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 74 |
| Conread position: | 165-490 |
| Cow position: | chr18:17992879-17992558 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 107 |
| Conread position: | 168-490 |
| Cow position: | chr18:35335170-35335493 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 183 |
| Conread position: | 169-490 |
| Cow position: | chr18:32651682-32651999 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 96 |
| Conread position: | 176-489 |
| Cow position: | chr18:27986722-27987030 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 106 |
| Conread position: | 189-487 |
| Cow position: | chr18:19540164-19539874 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 182, 49 |
| Conread position: | 207-490 |
| Cow position: | chr18:44601267-44601542 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 225-488 |
| Cow position: | chr18:16393897-16393639 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 184, 63 |
| Conread position: | 227-490 |
| Cow position: | chr18:51464727-51464473 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 181, 56 |
| Conread position: | 271-490 |
| Cow position: | chr18:6869468-6869253 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 283-490 |
| Cow position: | chr18:16533782-16533983 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 293-490 |
| Cow position: | chr18:53785649-53785841 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 346-487 |
| Cow position: | chr18:2887164-2887020 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.