Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 3-253 |
| Cow position: | chr19:562174-561929 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 3-302 |
| Cow position: | chr19:27053293-27053012 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 65 |
| Conread position: | 3-348 |
| Cow position: | chr19:33872779-33873107 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-490 |
| Cow position: | chr19:33955-34428 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 78 |
| Conread position: | 3-490 |
| Cow position: | chr19:4385013-4385489 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 3-490 |
| Cow position: | chr19:10672771-10672298 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 3-490 |
| Cow position: | chr19:28582100-28581648 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 66 |
| Conread position: | 3-490 |
| Cow position: | chr19:39390062-39390525 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr19:55078285-55078754 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-494 |
| Cow position: | chr19:40852895-40852418 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 4-314 |
| Cow position: | chr19:544372-544056 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 74, 268 |
| Conread position: | 4-490 |
| Cow position: | chr19:171747-172219 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 70 |
| Conread position: | 4-490 |
| Cow position: | chr19:203499-203969 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 70 |
| Conread position: | 4-490 |
| Cow position: | chr19:4252812-4252350 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 75 |
| Conread position: | 7-440 |
| Cow position: | chr19:772118-772557 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 75, 292 |
| Conread position: | 12-473 |
| Cow position: | chr19:76698-76250 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 125 |
| Conread position: | 12-489 |
| Cow position: | chr19:685364-685850 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 336 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 70, 263 |
| Conread position: | 12-489 |
| Cow position: | chr19:33941158-33941619 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 59 |
| Conread position: | 16-490 |
| Cow position: | chr19:32223870-32223431 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 315 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 67, 87 |
| Conread position: | 25-490 |
| Cow position: | chr19:28592813-28593285 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 194 |
| Conread position: | 36-464 |
| Cow position: | chr19:260994-261418 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 44-486 |
| Cow position: | chr19:378309-377871 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 60-466 |
| Cow position: | chr19:32212480-32212086 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 196 |
| Conread position: | 60-486 |
| Cow position: | chr19:547972-548391 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 60-489 |
| Cow position: | chr19:7341652-7342075 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 278 |
| Conread position: | 60-490 |
| Cow position: | chr19:37487-37904 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 203 |
| Conread position: | 60-490 |
| Cow position: | chr19:32244252-32244692 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 174 |
| Conread position: | 60-490 |
| Cow position: | chr19:43143299-43143724 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 62-490 |
| Cow position: | chr19:52152665-52152253 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 104-486 |
| Cow position: | chr19:40888020-40887641 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 124 |
| Conread position: | 104-490 |
| Cow position: | chr19:30754802-30755186 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 104-490 |
| Cow position: | chr19:35376191-35376566 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 105-488 |
| Cow position: | chr19:20111599-20111216 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 10, 248 |
| Conread position: | 106-490 |
| Cow position: | chr19:32665160-32665538 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 117-490 |
| Cow position: | chr19:30371916-30372290 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 129-400 |
| Cow position: | chr19:36477011-36477271 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 132-400 |
| Cow position: | chr19:6553061-6553309 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 214, 101 |
| Conread position: | 133-497 |
| Cow position: | chr19:42649411-42649060 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 204, 104 |
| Conread position: | 134-490 |
| Cow position: | chr19:31341379-31341714 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 275, 65 |
| Conread position: | 136-499 |
| Cow position: | chr19:35978925-35979281 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 77, 91 |
| Conread position: | 139-466 |
| Cow position: | chr19:20125294-20125605 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 179, 53 |
| Conread position: | 140-490 |
| Cow position: | chr19:29209227-29209569 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 145-466 |
| Cow position: | chr19:1031779-1032090 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 145-486 |
| Cow position: | chr19:36036033-36036363 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 146-490 |
| Cow position: | chr19:416317-416661 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 9 |
| Conread position: | 150-490 |
| Cow position: | chr19:171071-170734 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 5 |
| Conread position: | 152-331 |
| Cow position: | chr19:801664-801842 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 155-386 |
| Cow position: | chr19:350898-350666 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 78 |
| Conread position: | 155-440 |
| Cow position: | chr19:32238179-32237899 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 205, 45 |
| Conread position: | 155-490 |
| Cow position: | chr19:4533067-4532741 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 150 |
| Conread position: | 165-444 |
| Cow position: | chr19:39688236-39688505 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 99 |
| Conread position: | 165-489 |
| Cow position: | chr19:7487999-7488320 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 100 |
| Conread position: | 216-440 |
| Cow position: | chr19:39546374-39546582 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 193, 11 |
| Conread position: | 242-488 |
| Cow position: | chr19:561731-561499 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 169, 27 |
| Conread position: | 300-487 |
| Cow position: | chr19:27052943-27052764 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 110, 52 |
Show alignments to all cow chromosomes.