Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 2-490 |
| Cow position: | chr21:7267928-7267459 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 26 |
| Conread position: | 3-464 |
| Cow position: | chr21:40272200-40271762 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 46 |
| Conread position: | 3-466 |
| Cow position: | chr21:34259591-34259159 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 79 |
| Conread position: | 3-488 |
| Cow position: | chr21:2769847-2769379 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 3-490 |
| Cow position: | chr21:1292570-1292095 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 92 |
| Conread position: | 3-490 |
| Cow position: | chr21:2415844-2416319 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 223 |
| Conread position: | 3-490 |
| Cow position: | chr21:3778385-3778850 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 46 |
| Conread position: | 3-490 |
| Cow position: | chr21:33251006-33251476 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-494 |
| Cow position: | chr21:10566290-10566763 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 71 |
| Conread position: | 4-252 |
| Cow position: | chr21:2542266-2542023 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 113 |
| Conread position: | 4-490 |
| Cow position: | chr21:11505167-11505671 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 300 |
| Conread position: | 4-490 |
| Cow position: | chr21:12056411-12055916 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 283 |
| Conread position: | 4-490 |
| Cow position: | chr21:35596002-35596452 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 76 |
| Conread position: | 7-490 |
| Cow position: | chr21:2884121-2883664 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 42 |
| Conread position: | 7-490 |
| Cow position: | chr21:48115722-48116193 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 70 |
| Conread position: | 12-440 |
| Cow position: | chr21:2501556-2501968 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 60 |
| Conread position: | 12-487 |
| Cow position: | chr21:10849700-10850161 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 62 |
| Conread position: | 15-293 |
| Cow position: | chr21:41952802-41953072 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 15-335 |
| Cow position: | chr21:4590346-4590035 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 33-490 |
| Cow position: | chr21:4183175-4183608 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 36-466 |
| Cow position: | chr21:358667-359076 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 50-466 |
| Cow position: | chr21:33754940-33755368 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 53-489 |
| Cow position: | chr21:46915239-46915670 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 227 |
| Conread position: | 55-490 |
| Cow position: | chr21:39424720-39425147 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 198 |
| Conread position: | 60-296 |
| Cow position: | chr21:19609772-19610008 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 213 |
| Conread position: | 60-407 |
| Cow position: | chr21:5016370-5016028 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 60-488 |
| Cow position: | chr21:4090305-4090731 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 169 |
| Conread position: | 60-488 |
| Cow position: | chr21:26638800-26638383 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 196 |
| Conread position: | 60-488 |
| Cow position: | chr21:47947770-47948191 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 60-490 |
| Cow position: | chr21:2476851-2476428 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 60-490 |
| Cow position: | chr21:2510313-2510735 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 60-490 |
| Cow position: | chr21:17572586-17573005 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 60-490 |
| Cow position: | chr21:26819357-26818937 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 220 |
| Conread position: | 60-490 |
| Cow position: | chr21:27708418-27708846 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 60-524 |
| Cow position: | chr21:2454375-2454839 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 201 |
| Conread position: | 60-543 |
| Cow position: | chr21:28529886-28529407 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 220 |
| Conread position: | 61-490 |
| Cow position: | chr21:31559990-31559570 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 205 |
| Conread position: | 62-320 |
| Cow position: | chr21:39580380-39580638 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 145 |
| Conread position: | 64-490 |
| Cow position: | chr21:11453993-11453572 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 164 |
| Conread position: | 68-490 |
| Cow position: | chr21:145585-146003 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 197 |
| Conread position: | 80-490 |
| Cow position: | chr21:993348-992935 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 6, 201 |
| Conread position: | 81-365 |
| Cow position: | chr21:18692434-18692717 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 81-450 |
| Cow position: | chr21:215984-216352 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 81-490 |
| Cow position: | chr21:1190720-1191132 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 184 |
| Conread position: | 82-466 |
| Cow position: | chr21:21516890-21517263 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 104-422 |
| Cow position: | chr21:34055213-34054899 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 119 |
| Conread position: | 104-488 |
| Cow position: | chr21:23860483-23860865 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 181 |
| Conread position: | 114-488 |
| Cow position: | chr21:3615004-3615374 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 114-488 |
| Cow position: | chr21:30600202-30599838 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 56 |
| Conread position: | 129-490 |
| Cow position: | chr21:4083381-4083730 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 279, 63 |
| Conread position: | 134-432 |
| Cow position: | chr21:47939210-47939507 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 138 |
| Conread position: | 134-466 |
| Cow position: | chr21:4076578-4076905 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 137 |
| Conread position: | 134-490 |
| Cow position: | chr21:2530395-2530043 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 154 |
| Conread position: | 137-309 |
| Cow position: | chr21:35089437-35089606 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 139-490 |
| Cow position: | chr21:13124258-13123915 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 16 |
| Conread position: | 146-424 |
| Cow position: | chr21:21031484-21031754 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 17 |
| Conread position: | 147-308 |
| Cow position: | chr21:23811657-23811814 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 152-490 |
| Cow position: | chr21:34292767-34293101 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 121 |
| Conread position: | 155-490 |
| Cow position: | chr21:2716917-2716599 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 123 |
| Conread position: | 155-491 |
| Cow position: | chr21:4222943-4222602 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 74 |
| Conread position: | 160-473 |
| Cow position: | chr21:9891370-9891673 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 80 |
| Conread position: | 162-490 |
| Cow position: | chr21:3426245-3426569 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 105, 37 |
| Conread position: | 164-490 |
| Cow position: | chr21:2674876-2674545 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 114 |
| Conread position: | 176-490 |
| Cow position: | chr21:2789208-2788907 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 116 |
| Conread position: | 189-490 |
| Cow position: | chr21:30561588-30561886 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 89 |
| Conread position: | 191-489 |
| Cow position: | chr21:36714428-36714715 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 269-490 |
| Cow position: | chr21:2541550-2541329 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 140, 68 |
| Conread position: | 271-447 |
| Cow position: | chr21:27624-27790 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 140, 25 |
| Conread position: | 290-490 |
| Cow position: | chr21:4456716-4456911 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 33 |
Show alignments to all cow chromosomes.