Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 3-311 |
| Cow position: | chr22:36180566-36180879 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 3-466 |
| Cow position: | chr22:13772221-13772668 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 239 |
| Conread position: | 3-466 |
| Cow position: | chr22:44456751-44457203 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 9 |
| Conread position: | 3-466 |
| Cow position: | chr22:46585881-46585424 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 3-490 |
| Cow position: | chr22:561260-560794 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 64 |
| Conread position: | 3-490 |
| Cow position: | chr22:1294062-1293585 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 130 |
| Conread position: | 3-490 |
| Cow position: | chr22:1321067-1321523 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 3-490 |
| Cow position: | chr22:15850771-15851246 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 218 |
| Conread position: | 3-490 |
| Cow position: | chr22:17329298-17328828 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 72 |
| Conread position: | 3-490 |
| Cow position: | chr22:19144259-19143788 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr22:21588777-21589238 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr22:31312783-31313252 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 70 |
| Conread position: | 3-490 |
| Cow position: | chr22:36736219-36736674 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 123 |
| Conread position: | 3-490 |
| Cow position: | chr22:37131095-37131559 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 120 |
| Conread position: | 3-490 |
| Cow position: | chr22:39470078-39469608 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr22:39882725-39882265 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 79 |
| Conread position: | 4-490 |
| Cow position: | chr22:1271070-1270599 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 4-490 |
| Cow position: | chr22:5933561-5933073 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 277 |
| Conread position: | 7-466 |
| Cow position: | chr22:1285497-1285044 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 7-490 |
| Cow position: | chr22:42990619-42991083 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 42 |
| Conread position: | 7-490 |
| Cow position: | chr22:44489305-44489798 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 293 |
| Conread position: | 12-263 |
| Cow position: | chr22:27386943-27386700 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 12-436 |
| Cow position: | chr22:37073711-37073319 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 23, 119 |
| Conread position: | 12-490 |
| Cow position: | chr22:1878250-1878703 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 72 |
| Conread position: | 12-490 |
| Cow position: | chr22:34167768-34168243 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 253 |
| Conread position: | 15-279 |
| Cow position: | chr22:44609082-44609342 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 66, 118 |
| Conread position: | 15-488 |
| Cow position: | chr22:3307272-3306823 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 143 |
| Conread position: | 15-490 |
| Cow position: | chr22:6504209-6503753 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 114 |
| Conread position: | 34-351 |
| Cow position: | chr22:12732598-12732298 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 34-489 |
| Cow position: | chr22:7276986-7277435 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 47-490 |
| Cow position: | chr22:33350633-33351080 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 133 |
| Conread position: | 50-231 |
| Cow position: | chr22:15314881-15314701 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 52-464 |
| Cow position: | chr22:8136718-8136311 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 16 |
| Conread position: | 60-415 |
| Cow position: | chr22:5307600-5307954 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 214 |
| Conread position: | 60-466 |
| Cow position: | chr22:10910371-10909970 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 216 |
| Conread position: | 60-466 |
| Cow position: | chr22:44370130-44369733 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 192 |
| Conread position: | 60-489 |
| Cow position: | chr22:37264937-37265364 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 60-490 |
| Cow position: | chr22:327664-327245 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 60-490 |
| Cow position: | chr22:693125-693543 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 60-490 |
| Cow position: | chr22:6984738-6985166 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 60-490 |
| Cow position: | chr22:10546134-10546556 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 60-490 |
| Cow position: | chr22:18476277-18475855 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 202 |
| Conread position: | 60-490 |
| Cow position: | chr22:24949313-24949741 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 225 |
| Conread position: | 60-490 |
| Cow position: | chr22:27310293-27309862 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 213 |
| Conread position: | 60-490 |
| Cow position: | chr22:35672872-35672444 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 203 |
| Conread position: | 62-489 |
| Cow position: | chr22:5233811-5233395 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 199 |
| Conread position: | 62-490 |
| Cow position: | chr22:3278864-3278442 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 199 |
| Conread position: | 67-490 |
| Cow position: | chr22:16199985-16200397 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 206 |
| Conread position: | 68-490 |
| Cow position: | chr22:11030481-11030871 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 303, 16 |
| Conread position: | 81-369 |
| Cow position: | chr22:526404-526120 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 84-489 |
| Cow position: | chr22:31335522-31335123 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 52 |
| Conread position: | 84-490 |
| Cow position: | chr22:44933488-44933891 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 181 |
| Conread position: | 91-458 |
| Cow position: | chr22:37067402-37067035 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 117 |
| Conread position: | 99-277 |
| Cow position: | chr22:871309-871134 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 105-424 |
| Cow position: | chr22:293623-293318 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 303, 118 |
| Conread position: | 105-490 |
| Cow position: | chr22:35943863-35943487 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 107-487 |
| Cow position: | chr22:309255-309623 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 114-491 |
| Cow position: | chr22:44395321-44395693 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 107 |
| Conread position: | 121-457 |
| Cow position: | chr22:44353402-44353069 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 144 |
| Conread position: | 132-403 |
| Cow position: | chr22:41237122-41237395 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 141, 215 |
| Conread position: | 132-418 |
| Cow position: | chr22:41420128-41419849 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 215 |
| Conread position: | 134-490 |
| Cow position: | chr22:46852901-46853253 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 160, 129 |
| Conread position: | 140-478 |
| Cow position: | chr22:46636129-46635800 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 152-489 |
| Cow position: | chr22:32348388-32348069 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 258, 76 |
| Conread position: | 153-493 |
| Cow position: | chr22:36266962-36267284 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 179, 24 |
| Conread position: | 155-416 |
| Cow position: | chr22:36534385-36534126 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 182 |
| Conread position: | 155-488 |
| Cow position: | chr22:118236-117906 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 155-490 |
| Cow position: | chr22:1318974-1319308 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 124 |
| Conread position: | 155-490 |
| Cow position: | chr22:5672318-5672648 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 117 |
| Conread position: | 160-490 |
| Cow position: | chr22:36861946-36861619 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 104 |
| Conread position: | 161-390 |
| Cow position: | chr22:42771133-42771360 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 213, 104 |
| Conread position: | 162-464 |
| Cow position: | chr22:10077160-10076867 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 105, 37 |
| Conread position: | 164-490 |
| Cow position: | chr22:18816793-18816470 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 101 |
| Conread position: | 178-490 |
| Cow position: | chr22:158312-157991 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 200 |
| Conread position: | 179-471 |
| Cow position: | chr22:32485724-32485444 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 85 |
| Conread position: | 202-487 |
| Cow position: | chr22:4065267-4065549 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 264-462 |
| Cow position: | chr22:34598366-34598558 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 147, 7 |
| Conread position: | 351-488 |
| Cow position: | chr22:13917278-13917412 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 359-490 |
| Cow position: | chr22:12732065-12731933 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.