Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 3-447 |
| Cow position: | chr23:1140999-1141425 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 71 |
| Conread position: | 3-447 |
| Cow position: | chr23:2715777-2716220 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 263 |
| Conread position: | 3-488 |
| Cow position: | chr23:4276406-4276864 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 107 |
| Conread position: | 3-488 |
| Cow position: | chr23:15176496-15176984 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 109, 71 |
| Conread position: | 3-488 |
| Cow position: | chr23:15220454-15219988 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 46 |
| Conread position: | 3-490 |
| Cow position: | chr23:2027686-2027207 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 46 |
| Conread position: | 3-490 |
| Cow position: | chr23:19488971-19489449 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 9 |
| Conread position: | 3-490 |
| Cow position: | chr23:27398945-27399415 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 71 |
| Conread position: | 3-490 |
| Cow position: | chr23:28912852-28913323 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 71 |
| Conread position: | 3-490 |
| Cow position: | chr23:36031931-36031462 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 4-314 |
| Cow position: | chr23:2756936-2757239 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 4-490 |
| Cow position: | chr23:22147837-22147339 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 52 |
| Conread position: | 12-490 |
| Cow position: | chr23:4433893-4434374 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 15-487 |
| Cow position: | chr23:1025603-1025154 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 16-490 |
| Cow position: | chr23:4509549-4510010 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 34-490 |
| Cow position: | chr23:4815539-4815984 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 12 |
| Conread position: | 36-475 |
| Cow position: | chr23:11777949-11778382 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 10 |
| Conread position: | 50-489 |
| Cow position: | chr23:2796083-2795655 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 14 |
| Conread position: | 50-490 |
| Cow position: | chr23:3882218-3881787 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 55-490 |
| Cow position: | chr23:20301690-20302126 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 60-335 |
| Cow position: | chr23:14975278-14975010 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 206 |
| Conread position: | 60-490 |
| Cow position: | chr23:4359321-4359741 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 60-490 |
| Cow position: | chr23:19951101-19950672 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 79 |
| Conread position: | 70-490 |
| Cow position: | chr23:16617337-16616938 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 73-368 |
| Cow position: | chr23:14966477-14966184 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 75-490 |
| Cow position: | chr23:15525119-15525521 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 66 |
| Conread position: | 80-488 |
| Cow position: | chr23:28216796-28217200 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 199 |
| Conread position: | 81-490 |
| Cow position: | chr23:4641114-4640713 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 51 |
| Conread position: | 104-490 |
| Cow position: | chr23:22876099-22875723 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 105-324 |
| Cow position: | chr23:31652307-31652102 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 105-488 |
| Cow position: | chr23:2339936-2340312 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 265, 146 |
| Conread position: | 133-490 |
| Cow position: | chr23:967790-967434 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 132 |
| Conread position: | 136-487 |
| Cow position: | chr23:19017270-19017605 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 115, 122 |
| Conread position: | 137-465 |
| Cow position: | chr23:31595620-31595291 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 137-485 |
| Cow position: | chr23:19332836-19332492 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 130, 54 |
| Conread position: | 141-382 |
| Cow position: | chr23:19449588-19449831 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 211 |
| Conread position: | 145-466 |
| Cow position: | chr23:989069-988753 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 10 |
| Conread position: | 145-490 |
| Cow position: | chr23:5875200-5874863 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 13 |
| Conread position: | 150-450 |
| Cow position: | chr23:1330711-1330418 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 103 |
| Conread position: | 155-466 |
| Cow position: | chr23:2765788-2765491 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 117 |
| Conread position: | 155-490 |
| Cow position: | chr23:3013211-3013557 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 131 |
| Conread position: | 155-490 |
| Cow position: | chr23:5779506-5779175 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 192 |
| Conread position: | 160-440 |
| Cow position: | chr23:7273246-7273516 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 85 |
| Conread position: | 165-443 |
| Cow position: | chr23:16481761-16481489 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 107 |
| Conread position: | 165-490 |
| Cow position: | chr23:2574155-2574476 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 118 |
| Conread position: | 171-490 |
| Cow position: | chr23:30636706-30636390 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 94 |
| Conread position: | 182-490 |
| Cow position: | chr23:31446421-31446726 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 206-347 |
| Cow position: | chr23:6469644-6469504 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 208-466 |
| Cow position: | chr23:8980856-8980605 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 70 |
| Conread position: | 223-466 |
| Cow position: | chr23:2725510-2725744 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 186, 44 |
| Conread position: | 243-490 |
| Cow position: | chr23:2313570-2313326 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 166, 40 |
| Conread position: | 273-440 |
| Cow position: | chr23:16616168-16616007 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 136, 77 |
| Conread position: | 298-490 |
| Cow position: | chr23:4888402-4888592 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 110, 49 |
| Conread position: | 346-466 |
| Cow position: | chr23:2524429-2524308 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.