Cow genome map

Conread name: rspc012_d20.y1

Conread position: 3-227
Cow position: chr24:9544355-9544564 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 3-325
Cow position: chr24:17314798-17314479 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 81

Conread position: 3-348
Cow position: chr24:29186329-29186663 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 71

Conread position: 3-407
Cow position: chr24:37216243-37216646 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 126

Conread position: 3-489
Cow position: chr24:12236576-12237050 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 139

Conread position: 3-489
Cow position: chr24:16649790-16649304 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 19

Conread position: 3-490
Cow position: chr24:4416001-4415528 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 46

Conread position: 3-490
Cow position: chr24:6144884-6145357 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 56

Conread position: 3-490
Cow position: chr24:19832909-19833378 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 46

Conread position: 4-488
Cow position: chr24:33932875-33933361 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 209

Conread position: 4-490
Cow position: chr24:12161410-12161876 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 62

Conread position: 4-490
Cow position: chr24:12798233-12797767 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 125

Conread position: 4-490
Cow position: chr24:13021196-13021665 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 102

Conread position: 8-490
Cow position: chr24:6335217-6335692 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 5

Conread position: 9-490
Cow position: chr24:39677974-39678426 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 321
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 76, 13

Conread position: 14-490
Cow position: chr24:15392774-15392312 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 55

Conread position: 15-488
Cow position: chr24:14391190-14390734 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 28

Conread position: 16-313
Cow position: chr24:38635275-38635566 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 48

Conread position: 16-462
Cow position: chr24:12289187-12288758 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 33

Conread position: 50-320
Cow position: chr24:149030-148763 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 39, 14

Conread position: 54-463
Cow position: chr24:12114468-12114069 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 30

Conread position: 55-490
Cow position: chr24:12224893-12224472 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 291
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 84

Conread position: 60-335
Cow position: chr24:7712722-7712454 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 22, 162

Conread position: 60-408
Cow position: chr24:20267787-20268132 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 238
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 22, 168

Conread position: 60-457
Cow position: chr24:7060681-7061066 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 109

Conread position: 60-488
Cow position: chr24:16085104-16084665 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 289
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 226, 70

Conread position: 60-489
Cow position: chr24:6433807-6434237 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 216

Conread position: 60-490
Cow position: chr24:6025527-6025098 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 213

Conread position: 60-490
Cow position: chr24:6644987-6645410 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 213

Conread position: 60-490
Cow position: chr24:9189161-9188734 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 78

Conread position: 60-490
Cow position: chr24:22792745-22793171 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 84

Conread position: 60-490
Cow position: chr24:33739773-33739347 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 213

Conread position: 60-490
Cow position: chr24:44017115-44017543 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 84

Conread position: 70-490
Cow position: chr24:6083596-6084014 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 203

Conread position: 80-402
Cow position: chr24:5993380-5993069 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 133, 184

Conread position: 81-489
Cow position: chr24:14385017-14384617 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 31

Conread position: 97-441
Cow position: chr24:36707467-36707799 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 238
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 11, 112

Conread position: 104-417
Cow position: chr24:35991033-35990737 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 288, 17

Conread position: 104-490
Cow position: chr24:6351807-6352192 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 247

Conread position: 105-487
Cow position: chr24:14873726-14873348 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 10, 60

Conread position: 106-490
Cow position: chr24:35841986-35841620 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 288, 116

Conread position: 107-326
Cow position: chr24:32330964-32331182 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 109-443
Cow position: chr24:14885625-14885290 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 226
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 13, 27

Conread position: 109-490
Cow position: chr24:12085823-12086195 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 34

Conread position: 122-441
Cow position: chr24:12207777-12208087 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 287, 14

Conread position: 132-443
Cow position: chr24:32125852-32125562 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 229, 101

Conread position: 133-490
Cow position: chr24:13181693-13181353 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 275, 58

Conread position: 136-490
Cow position: chr24:35838979-35838628 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 19

Conread position: 138-407
Cow position: chr24:23098783-23098527 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 145-401
Cow position: chr24:6537226-6537466 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 147-490
Cow position: chr24:13187852-13188182 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 262, 114

Conread position: 155-324
Cow position: chr24:14583764-14583930 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 155-382
Cow position: chr24:17525111-17525333 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 155-447
Cow position: chr24:17187211-17187500 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 117

Conread position: 157-490
Cow position: chr24:12485650-12485320 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 56, 70

Conread position: 165-488
Cow position: chr24:36560396-36560088 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 241, 100

Conread position: 168-415
Cow position: chr24:37301395-37301159 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 158, 97

Conread position: 175-490
Cow position: chr24:13531849-13531539 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 223-425
Cow position: chr24:14332629-14332828 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 138
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 186, 11

Conread position: 228-490
Cow position: chr24:2635858-2636117 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 181, 55

Conread position: 228-490
Cow position: chr24:8029889-8030148 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 181, 55

Conread position: 323-489
Cow position: chr24:14584927-14585089 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 88, 18

Conread position: 349-490
Cow position: chr24:9092418-9092276 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 0

Show alignments to all cow chromosomes.