Cow genome map
Conread name: | rspc012_d20.y1 |
Conread position: | 3-227 |
Cow position: | chr24:9544355-9544564 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 160 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 3-325 |
Cow position: | chr24:17314798-17314479 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 81 |
Conread position: | 3-348 |
Cow position: | chr24:29186329-29186663 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 71 |
Conread position: | 3-407 |
Cow position: | chr24:37216243-37216646 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 126 |
Conread position: | 3-489 |
Cow position: | chr24:12236576-12237050 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 139 |
Conread position: | 3-489 |
Cow position: | chr24:16649790-16649304 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 19 |
Conread position: | 3-490 |
Cow position: | chr24:4416001-4415528 (view UCSC Genome Browser custom track) |
Alignm length: | 496 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 288, 46 |
Conread position: | 3-490 |
Cow position: | chr24:6144884-6145357 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 56 |
Conread position: | 3-490 |
Cow position: | chr24:19832909-19833378 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 46 |
Conread position: | 4-488 |
Cow position: | chr24:33932875-33933361 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 209 |
Conread position: | 4-490 |
Cow position: | chr24:12161410-12161876 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 288, 62 |
Conread position: | 4-490 |
Cow position: | chr24:12798233-12797767 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 125 |
Conread position: | 4-490 |
Cow position: | chr24:13021196-13021665 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 102 |
Conread position: | 8-490 |
Cow position: | chr24:6335217-6335692 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 5 |
Conread position: | 9-490 |
Cow position: | chr24:39677974-39678426 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 321 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 76, 13 |
Conread position: | 14-490 |
Cow position: | chr24:15392774-15392312 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 55 |
Conread position: | 15-488 |
Cow position: | chr24:14391190-14390734 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 28 |
Conread position: | 16-313 |
Cow position: | chr24:38635275-38635566 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 199 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 84, 48 |
Conread position: | 16-462 |
Cow position: | chr24:12289187-12288758 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 33 |
Conread position: | 50-320 |
Cow position: | chr24:149030-148763 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 195 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 39, 14 |
Conread position: | 54-463 |
Cow position: | chr24:12114468-12114069 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 30 |
Conread position: | 55-490 |
Cow position: | chr24:12224893-12224472 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 291 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 11, 84 |
Conread position: | 60-335 |
Cow position: | chr24:7712722-7712454 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 185 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 22, 162 |
Conread position: | 60-408 |
Cow position: | chr24:20267787-20268132 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 238 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 22, 168 |
Conread position: | 60-457 |
Cow position: | chr24:7060681-7061066 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 109 |
Conread position: | 60-488 |
Cow position: | chr24:16085104-16084665 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 289 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 226, 70 |
Conread position: | 60-489 |
Cow position: | chr24:6433807-6434237 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 216 |
Conread position: | 60-490 |
Cow position: | chr24:6025527-6025098 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 213 |
Conread position: | 60-490 |
Cow position: | chr24:6644987-6645410 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 213 |
Conread position: | 60-490 |
Cow position: | chr24:9189161-9188734 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 78 |
Conread position: | 60-490 |
Cow position: | chr24:22792745-22793171 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 84 |
Conread position: | 60-490 |
Cow position: | chr24:33739773-33739347 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 213 |
Conread position: | 60-490 |
Cow position: | chr24:44017115-44017543 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 84 |
Conread position: | 70-490 |
Cow position: | chr24:6083596-6084014 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 203 |
Conread position: | 80-402 |
Cow position: | chr24:5993380-5993069 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 228 |
Alignm E-value: | 8.99634e-43 |
Alignm gaps (pig, cow): | 133, 184 |
Conread position: | 81-489 |
Cow position: | chr24:14385017-14384617 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 327, 31 |
Conread position: | 97-441 |
Cow position: | chr24:36707467-36707799 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 238 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 11, 112 |
Conread position: | 104-417 |
Cow position: | chr24:35991033-35990737 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 225 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 288, 17 |
Conread position: | 104-490 |
Cow position: | chr24:6351807-6352192 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 247 |
Conread position: | 105-487 |
Cow position: | chr24:14873726-14873348 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 248 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 10, 60 |
Conread position: | 106-490 |
Cow position: | chr24:35841986-35841620 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 267 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 288, 116 |
Conread position: | 107-326 |
Cow position: | chr24:32330964-32331182 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 154 |
Alignm E-value: | 8e-32 |
Alignm gaps (pig, cow): | 66, 0 |
Conread position: | 109-443 |
Cow position: | chr24:14885625-14885290 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 226 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 13, 27 |
Conread position: | 109-490 |
Cow position: | chr24:12085823-12086195 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 299, 34 |
Conread position: | 122-441 |
Cow position: | chr24:12207777-12208087 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 224 |
Alignm E-value: | 8.00001e-42 |
Alignm gaps (pig, cow): | 287, 14 |
Conread position: | 132-443 |
Cow position: | chr24:32125852-32125562 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 227 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 229, 101 |
Conread position: | 133-490 |
Cow position: | chr24:13181693-13181353 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 246 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 275, 58 |
Conread position: | 136-490 |
Cow position: | chr24:35838979-35838628 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 19 |
Conread position: | 138-407 |
Cow position: | chr24:23098783-23098527 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 181 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 110, 0 |
Conread position: | 145-401 |
Cow position: | chr24:6537226-6537466 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 179 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 147-490 |
Cow position: | chr24:13187852-13188182 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 237 |
Alignm E-value: | 8.00001e-42 |
Alignm gaps (pig, cow): | 262, 114 |
Conread position: | 155-324 |
Cow position: | chr24:14583764-14583930 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 122 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 117, 0 |
Conread position: | 155-382 |
Cow position: | chr24:17525111-17525333 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 152 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 155-447 |
Cow position: | chr24:17187211-17187500 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 254, 117 |
Conread position: | 157-490 |
Cow position: | chr24:12485650-12485320 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 228 |
Alignm E-value: | 8.00001e-42 |
Alignm gaps (pig, cow): | 56, 70 |
Conread position: | 165-488 |
Cow position: | chr24:36560396-36560088 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 230 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 241, 100 |
Conread position: | 168-415 |
Cow position: | chr24:37301395-37301159 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 182 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 158, 97 |
Conread position: | 175-490 |
Cow position: | chr24:13531849-13531539 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 189, 0 |
Conread position: | 223-425 |
Cow position: | chr24:14332629-14332828 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 138 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 186, 11 |
Conread position: | 228-490 |
Cow position: | chr24:2635858-2636117 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 186 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 181, 55 |
Conread position: | 228-490 |
Cow position: | chr24:8029889-8030148 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 190 |
Alignm E-value: | 8.00001e-42 |
Alignm gaps (pig, cow): | 181, 55 |
Conread position: | 323-489 |
Cow position: | chr24:14584927-14585089 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 132 |
Alignm E-value: | 8e-32 |
Alignm gaps (pig, cow): | 88, 18 |
Conread position: | 349-490 |
Cow position: | chr24:9092418-9092276 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 108 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.