Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 1-488 |
| Cow position: | chr28:18520980-18520507 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 66 |
| Conread position: | 3-293 |
| Cow position: | chr28:28973742-28973463 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 261, 71 |
| Conread position: | 3-296 |
| Cow position: | chr28:24667093-24667378 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 3-308 |
| Cow position: | chr28:1504124-1504417 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-314 |
| Cow position: | chr28:5752677-5752378 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 3-314 |
| Cow position: | chr28:7739737-7740037 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 3-317 |
| Cow position: | chr28:33251802-33252129 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 77, 276 |
| Conread position: | 3-336 |
| Cow position: | chr28:7790756-7790435 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 66, 125 |
| Conread position: | 3-448 |
| Cow position: | chr28:21358498-21358928 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 3-450 |
| Cow position: | chr28:12149812-12150231 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 3-464 |
| Cow position: | chr28:7816726-7817153 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 320 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 3-466 |
| Cow position: | chr28:5812187-5812641 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 3-488 |
| Cow position: | chr28:3193292-3192837 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 71 |
| Conread position: | 3-488 |
| Cow position: | chr28:5565344-5565816 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-489 |
| Cow position: | chr28:29819057-29819523 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 28 |
| Conread position: | 3-490 |
| Cow position: | chr28:1387909-1387439 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 39 |
| Conread position: | 3-490 |
| Cow position: | chr28:2083087-2083558 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 71 |
| Conread position: | 3-490 |
| Cow position: | chr28:7001485-7001944 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr28:8721979-8721493 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 118 |
| Conread position: | 3-490 |
| Cow position: | chr28:10582498-10582030 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr28:10619625-10619154 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 153 |
| Conread position: | 3-490 |
| Cow position: | chr28:14706184-14705716 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 64 |
| Conread position: | 3-490 |
| Cow position: | chr28:17387964-17388437 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 40 |
| Conread position: | 3-490 |
| Cow position: | chr28:17668029-17667558 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 4-490 |
| Cow position: | chr28:15378530-15378036 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 70 |
| Conread position: | 12-490 |
| Cow position: | chr28:781889-782351 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 62 |
| Conread position: | 12-490 |
| Cow position: | chr28:1168672-1168211 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 62 |
| Conread position: | 12-490 |
| Cow position: | chr28:26426769-26426318 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 61 |
| Conread position: | 15-314 |
| Cow position: | chr28:2990471-2990184 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 114 |
| Conread position: | 15-467 |
| Cow position: | chr28:21325279-21325722 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 122 |
| Conread position: | 15-487 |
| Cow position: | chr28:5796311-5796768 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 116 |
| Conread position: | 16-406 |
| Cow position: | chr28:26007531-26007900 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 16-461 |
| Cow position: | chr28:22827551-22827978 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 34-490 |
| Cow position: | chr28:18089492-18089052 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 307 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 38-490 |
| Cow position: | chr28:32792870-32792424 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 8 |
| Conread position: | 50-309 |
| Cow position: | chr28:15035896-15035639 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 50-348 |
| Cow position: | chr28:5115552-5115264 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 33, 133 |
| Conread position: | 50-463 |
| Cow position: | chr28:13522253-13522655 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 14 |
| Conread position: | 50-490 |
| Cow position: | chr28:13459494-13459925 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 18 |
| Conread position: | 50-490 |
| Cow position: | chr28:22261631-22261195 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 14 |
| Conread position: | 60-328 |
| Cow position: | chr28:489018-489286 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 213 |
| Conread position: | 60-466 |
| Cow position: | chr28:13441349-13440945 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 213 |
| Conread position: | 60-489 |
| Cow position: | chr28:6780799-6780375 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 227 |
| Conread position: | 60-490 |
| Cow position: | chr28:1952671-1953086 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 60-490 |
| Cow position: | chr28:14750075-14750504 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 225 |
| Conread position: | 60-490 |
| Cow position: | chr28:15950509-15950937 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 80-489 |
| Cow position: | chr28:15920909-15920511 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 9 |
| Conread position: | 81-490 |
| Cow position: | chr28:8378116-8378520 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 256 |
| Conread position: | 90-490 |
| Cow position: | chr28:34593402-34593795 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 175 |
| Conread position: | 95-482 |
| Cow position: | chr28:3774275-3773889 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 104-418 |
| Cow position: | chr28:34648520-34648816 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 168, 32 |
| Conread position: | 105-277 |
| Cow position: | chr28:10464270-10464099 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 58 |
| Conread position: | 115-466 |
| Cow position: | chr28:2591508-2591848 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 17 |
| Conread position: | 134-462 |
| Cow position: | chr28:15681496-15681817 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 147 |
| Conread position: | 136-431 |
| Cow position: | chr28:15585002-15585287 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 272, 155 |
| Conread position: | 137-490 |
| Cow position: | chr28:9953740-9954092 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 155-466 |
| Cow position: | chr28:9155655-9155353 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 44 |
| Conread position: | 164-461 |
| Cow position: | chr28:32331765-32331481 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 165-490 |
| Cow position: | chr28:17330898-17330571 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 102, 183 |
| Conread position: | 175-490 |
| Cow position: | chr28:1815223-1814912 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 90 |
| Conread position: | 177-490 |
| Cow position: | chr28:7901005-7901305 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 88 |
| Conread position: | 182-490 |
| Cow position: | chr28:7821916-7822213 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 189, 79 |
| Conread position: | 206-440 |
| Cow position: | chr28:14491140-14491364 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 203, 62 |
| Conread position: | 216-490 |
| Cow position: | chr28:24587125-24587389 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 193, 45 |
| Conread position: | 232-467 |
| Cow position: | chr28:4381108-4380887 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 179, 46 |
| Conread position: | 288-461 |
| Cow position: | chr28:2846738-2846573 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 305-489 |
| Cow position: | chr28:24652064-24652246 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 104, 42 |
Show alignments to all cow chromosomes.