Cow genome map

Conread name: rspc012_d20.y1

Conread position: 3-259
Cow position: chr29:42649807-42650057 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 83, 71

Conread position: 3-259
Cow position: chr29:42801667-42801917 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 83, 71

Conread position: 3-290
Cow position: chr29:21431904-21431617 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 79, 12

Conread position: 3-395
Cow position: chr29:45587849-45587472 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-487
Cow position: chr29:23975282-23975755 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 71

Conread position: 3-489
Cow position: chr29:16021982-16022450 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 328
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 77, 125

Conread position: 3-490
Cow position: chr29:2099295-2099766 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 71

Conread position: 3-490
Cow position: chr29:2689370-2689823 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 46

Conread position: 3-490
Cow position: chr29:2750934-2750472 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 61

Conread position: 3-490
Cow position: chr29:5957038-5957524 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 139

Conread position: 3-490
Cow position: chr29:6267044-6266572 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 69

Conread position: 3-490
Cow position: chr29:7431767-7431294 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr29:10648796-10648330 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr29:10824507-10824034 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 46

Conread position: 3-490
Cow position: chr29:11048740-11049204 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 77

Conread position: 3-490
Cow position: chr29:25933095-25932623 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 46

Conread position: 3-490
Cow position: chr29:26165369-26164901 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr29:39080257-39079784 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 46

Conread position: 3-490
Cow position: chr29:45459173-45459637 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 4-490
Cow position: chr29:38226446-38226923 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 8

Conread position: 4-490
Cow position: chr29:40503528-40503057 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 8

Conread position: 7-275
Cow position: chr29:8663727-8663987 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 82, 46

Conread position: 7-490
Cow position: chr29:35296318-35296796 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 132

Conread position: 7-490
Cow position: chr29:43322004-43322481 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 24

Conread position: 11-490
Cow position: chr29:2841920-2841447 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 12-490
Cow position: chr29:20250617-20251081 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 396, 62

Conread position: 16-490
Cow position: chr29:104045-104495 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 53

Conread position: 50-490
Cow position: chr29:48990-48556 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 10

Conread position: 60-487
Cow position: chr29:16109222-16109647 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 283

Conread position: 60-488
Cow position: chr29:15969646-15969231 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 60-490
Cow position: chr29:611119-610691 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 284

Conread position: 60-490
Cow position: chr29:13577921-13578340 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 196

Conread position: 60-490
Cow position: chr29:15895352-15894929 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 76

Conread position: 60-490
Cow position: chr29:27250838-27250413 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 60-490
Cow position: chr29:32315536-32315962 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 202

Conread position: 61-490
Cow position: chr29:28061171-28060744 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 170

Conread position: 80-380
Cow position: chr29:14368461-14368758 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 197
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 93, 148

Conread position: 81-490
Cow position: chr29:19623728-19623325 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 184

Conread position: 81-490
Cow position: chr29:19652624-19653030 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 184

Conread position: 84-490
Cow position: chr29:32539330-32539732 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 21

Conread position: 91-250
Cow position: chr29:35262861-35263020 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 110, 116

Conread position: 94-490
Cow position: chr29:27041239-27040842 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 179

Conread position: 95-490
Cow position: chr29:21246098-21246491 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 165

Conread position: 104-466
Cow position: chr29:803790-803428 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 255
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 145, 37

Conread position: 104-487
Cow position: chr29:4635421-4635048 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 194, 38

Conread position: 104-490
Cow position: chr29:30811090-30811453 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 161

Conread position: 106-435
Cow position: chr29:32890749-32891078 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 228
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 174, 257

Conread position: 115-440
Cow position: chr29:9644171-9643852 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 138

Conread position: 128-443
Cow position: chr29:15950614-15950309 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 28, 141

Conread position: 129-348
Cow position: chr29:34752119-34751911 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 138-494
Cow position: chr29:36599735-36599396 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 229
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 51

Conread position: 141-490
Cow position: chr29:31121384-31121727 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 72, 86

Conread position: 145-440
Cow position: chr29:16769718-16770004 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 10

Conread position: 146-490
Cow position: chr29:12796882-12796544 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 58

Conread position: 147-490
Cow position: chr29:34800220-34799888 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 76

Conread position: 149-490
Cow position: chr29:10848536-10848187 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 152-440
Cow position: chr29:14073354-14073067 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 149

Conread position: 152-484
Cow position: chr29:14013059-14013387 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 223
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 113, 147

Conread position: 155-490
Cow position: chr29:21543782-21543443 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 117

Conread position: 155-490
Cow position: chr29:43366401-43366077 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 254, 41

Conread position: 164-490
Cow position: chr29:7840397-7840718 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 228
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 97, 115

Conread position: 264-466
Cow position: chr29:13853322-13853124 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 62, 0

Conread position: 264-488
Cow position: chr29:21427357-21427135 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 146, 83

Conread position: 264-490
Cow position: chr29:34609247-34609030 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 145, 73

Conread position: 270-490
Cow position: chr29:31180828-31181045 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 139, 18

Show alignments to all cow chromosomes.