Cow genome map
Conread name: | rspc012_d20.y1 |
Conread position: | 3-259 |
Cow position: | chr29:42649807-42650057 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 175 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 83, 71 |
Conread position: | 3-259 |
Cow position: | chr29:42801667-42801917 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 177 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 83, 71 |
Conread position: | 3-290 |
Cow position: | chr29:21431904-21431617 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 199 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 79, 12 |
Conread position: | 3-395 |
Cow position: | chr29:45587849-45587472 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 3-487 |
Cow position: | chr29:23975282-23975755 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 382, 71 |
Conread position: | 3-489 |
Cow position: | chr29:16021982-16022450 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 328 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 77, 125 |
Conread position: | 3-490 |
Cow position: | chr29:2099295-2099766 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 71 |
Conread position: | 3-490 |
Cow position: | chr29:2689370-2689823 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 46 |
Conread position: | 3-490 |
Cow position: | chr29:2750934-2750472 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 61 |
Conread position: | 3-490 |
Cow position: | chr29:5957038-5957524 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 139 |
Conread position: | 3-490 |
Cow position: | chr29:6267044-6266572 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 69 |
Conread position: | 3-490 |
Cow position: | chr29:7431767-7431294 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 71 |
Conread position: | 3-490 |
Cow position: | chr29:10648796-10648330 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 71 |
Conread position: | 3-490 |
Cow position: | chr29:10824507-10824034 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 368, 46 |
Conread position: | 3-490 |
Cow position: | chr29:11048740-11049204 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 281, 77 |
Conread position: | 3-490 |
Cow position: | chr29:25933095-25932623 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 46 |
Conread position: | 3-490 |
Cow position: | chr29:26165369-26164901 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 71 |
Conread position: | 3-490 |
Cow position: | chr29:39080257-39079784 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 46 |
Conread position: | 3-490 |
Cow position: | chr29:45459173-45459637 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 405, 71 |
Conread position: | 4-490 |
Cow position: | chr29:38226446-38226923 (view UCSC Genome Browser custom track) |
Alignm length: | 496 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 382, 8 |
Conread position: | 4-490 |
Cow position: | chr29:40503528-40503057 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 404, 8 |
Conread position: | 7-275 |
Cow position: | chr29:8663727-8663987 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 200 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 82, 46 |
Conread position: | 7-490 |
Cow position: | chr29:35296318-35296796 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 132 |
Conread position: | 7-490 |
Cow position: | chr29:43322004-43322481 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 24 |
Conread position: | 11-490 |
Cow position: | chr29:2841920-2841447 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 17 |
Conread position: | 12-490 |
Cow position: | chr29:20250617-20251081 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 396, 62 |
Conread position: | 16-490 |
Cow position: | chr29:104045-104495 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 53 |
Conread position: | 50-490 |
Cow position: | chr29:48990-48556 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 10 |
Conread position: | 60-487 |
Cow position: | chr29:16109222-16109647 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 283 |
Conread position: | 60-488 |
Cow position: | chr29:15969646-15969231 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 0 |
Conread position: | 60-490 |
Cow position: | chr29:611119-610691 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 284 |
Conread position: | 60-490 |
Cow position: | chr29:13577921-13578340 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 196 |
Conread position: | 60-490 |
Cow position: | chr29:15895352-15894929 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 76 |
Conread position: | 60-490 |
Cow position: | chr29:27250838-27250413 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 17 |
Conread position: | 60-490 |
Cow position: | chr29:32315536-32315962 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 202 |
Conread position: | 61-490 |
Cow position: | chr29:28061171-28060744 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 170 |
Conread position: | 80-380 |
Cow position: | chr29:14368461-14368758 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 197 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 93, 148 |
Conread position: | 81-490 |
Cow position: | chr29:19623728-19623325 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 327, 184 |
Conread position: | 81-490 |
Cow position: | chr29:19652624-19653030 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 327, 184 |
Conread position: | 84-490 |
Cow position: | chr29:32539330-32539732 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 21 |
Conread position: | 91-250 |
Cow position: | chr29:35262861-35263020 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 114 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 110, 116 |
Conread position: | 94-490 |
Cow position: | chr29:27041239-27040842 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 179 |
Conread position: | 95-490 |
Cow position: | chr29:21246098-21246491 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 297, 165 |
Conread position: | 104-466 |
Cow position: | chr29:803790-803428 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 255 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 145, 37 |
Conread position: | 104-487 |
Cow position: | chr29:4635421-4635048 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 245 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 194, 38 |
Conread position: | 104-490 |
Cow position: | chr29:30811090-30811453 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 161 |
Conread position: | 106-435 |
Cow position: | chr29:32890749-32891078 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 228 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 174, 257 |
Conread position: | 115-440 |
Cow position: | chr29:9644171-9643852 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 138 |
Conread position: | 128-443 |
Cow position: | chr29:15950614-15950309 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 227 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 28, 141 |
Conread position: | 129-348 |
Cow position: | chr29:34752119-34751911 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 157 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 138-494 |
Cow position: | chr29:36599735-36599396 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 229 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 64, 51 |
Conread position: | 141-490 |
Cow position: | chr29:31121384-31121727 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 242 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 72, 86 |
Conread position: | 145-440 |
Cow position: | chr29:16769718-16770004 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 264, 10 |
Conread position: | 146-490 |
Cow position: | chr29:12796882-12796544 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 263, 58 |
Conread position: | 147-490 |
Cow position: | chr29:34800220-34799888 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 261, 76 |
Conread position: | 149-490 |
Cow position: | chr29:10848536-10848187 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 28 |
Conread position: | 152-440 |
Cow position: | chr29:14073354-14073067 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 199 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 83, 149 |
Conread position: | 152-484 |
Cow position: | chr29:14013059-14013387 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 223 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 113, 147 |
Conread position: | 155-490 |
Cow position: | chr29:21543782-21543443 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 117 |
Conread position: | 155-490 |
Cow position: | chr29:43366401-43366077 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 234 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 254, 41 |
Conread position: | 164-490 |
Cow position: | chr29:7840397-7840718 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 228 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 97, 115 |
Conread position: | 264-466 |
Cow position: | chr29:13853322-13853124 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 155 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 62, 0 |
Conread position: | 264-488 |
Cow position: | chr29:21427357-21427135 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 162 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 146, 83 |
Conread position: | 264-490 |
Cow position: | chr29:34609247-34609030 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 159 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 145, 73 |
Conread position: | 270-490 |
Cow position: | chr29:31180828-31181045 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 157 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 139, 18 |
Show alignments to all cow chromosomes.