Cow genome map
| Conread name: | rspc012_d20.y1 |
| Conread position: | 2-489 |
| Cow position: | chr4:1371815-1371372 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 3-368 |
| Cow position: | chr4:41118298-41118650 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 71 |
| Conread position: | 3-447 |
| Cow position: | chr4:16359077-16359488 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-447 |
| Cow position: | chr4:21338816-21338387 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 61 |
| Conread position: | 3-489 |
| Cow position: | chr4:1050451-1049977 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 71 |
| Conread position: | 3-489 |
| Cow position: | chr4:18516061-18516539 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 52 |
| Conread position: | 3-489 |
| Cow position: | chr4:29532543-29532071 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 70 |
| Conread position: | 3-490 |
| Cow position: | chr4:355087-355554 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr4:3960767-3961236 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 3-490 |
| Cow position: | chr4:4905326-4905798 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 46 |
| Conread position: | 3-490 |
| Cow position: | chr4:10407932-10408425 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 339 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 127 |
| Conread position: | 3-490 |
| Cow position: | chr4:13491744-13492220 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 71 |
| Conread position: | 3-490 |
| Cow position: | chr4:24446027-24445555 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 68 |
| Conread position: | 3-490 |
| Cow position: | chr4:25600429-25599974 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr4:33492982-33493456 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 69 |
| Conread position: | 3-490 |
| Cow position: | chr4:36895545-36896018 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 71 |
| Conread position: | 3-490 |
| Cow position: | chr4:43320465-43319992 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr4:43880282-43880753 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 69 |
| Conread position: | 3-490 |
| Cow position: | chr4:44724257-44724727 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr4:45050124-45049654 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 71 |
| Conread position: | 3-490 |
| Cow position: | chr4:66925187-66925649 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 74 |
| Conread position: | 4-447 |
| Cow position: | chr4:34185685-34185262 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 117 |
| Conread position: | 7-385 |
| Cow position: | chr4:33074207-33073845 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 42 |
| Conread position: | 7-490 |
| Cow position: | chr4:41330615-41331085 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 67 |
| Conread position: | 12-436 |
| Cow position: | chr4:46663378-46663792 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 12-490 |
| Cow position: | chr4:30308286-30307808 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 70, 115 |
| Conread position: | 14-490 |
| Cow position: | chr4:31668488-31668958 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 15-425 |
| Cow position: | chr4:60673090-60673480 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 38-490 |
| Cow position: | chr4:28830239-28830683 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 91 |
| Conread position: | 40-495 |
| Cow position: | chr4:58883466-58883033 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 294 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 50-488 |
| Cow position: | chr4:48025614-48026040 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 8 |
| Conread position: | 55-490 |
| Cow position: | chr4:101717-101285 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 128 |
| Conread position: | 55-490 |
| Cow position: | chr4:6269410-6268984 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 149 |
| Conread position: | 58-303 |
| Cow position: | chr4:54955187-54955432 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 31, 208 |
| Conread position: | 60-368 |
| Cow position: | chr4:41954011-41954315 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 22, 195 |
| Conread position: | 60-459 |
| Cow position: | chr4:9311454-9311850 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 60-466 |
| Cow position: | chr4:157745-158135 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 60-490 |
| Cow position: | chr4:528211-528637 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 60-490 |
| Cow position: | chr4:602213-602638 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 213 |
| Conread position: | 60-490 |
| Cow position: | chr4:1931404-1930979 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 224 |
| Conread position: | 60-490 |
| Cow position: | chr4:3124997-3125425 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 213 |
| Conread position: | 60-490 |
| Cow position: | chr4:5879402-5879815 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 60-490 |
| Cow position: | chr4:13547240-13547672 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 172 |
| Conread position: | 60-490 |
| Cow position: | chr4:23114959-23114532 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 60-490 |
| Cow position: | chr4:47764954-47764526 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 60-491 |
| Cow position: | chr4:65224318-65223889 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 61-490 |
| Cow position: | chr4:16055811-16056248 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 223 |
| Conread position: | 68-489 |
| Cow position: | chr4:1464688-1464287 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 81-371 |
| Cow position: | chr4:3357962-3358251 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 185 |
| Conread position: | 81-407 |
| Cow position: | chr4:46713094-46712781 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 81-490 |
| Cow position: | chr4:6491108-6490704 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 184 |
| Conread position: | 82-395 |
| Cow position: | chr4:64982668-64982968 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 93-488 |
| Cow position: | chr4:40825000-40824603 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 260 |
| Conread position: | 94-347 |
| Cow position: | chr4:57978671-57978920 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 95-348 |
| Cow position: | chr4:30282946-30283196 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 104-470 |
| Cow position: | chr4:6449622-6449267 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 106-490 |
| Cow position: | chr4:11383694-11384053 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 303, 115 |
| Conread position: | 122-490 |
| Cow position: | chr4:12241942-12241575 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 144 |
| Conread position: | 132-436 |
| Cow position: | chr4:21358955-21359235 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 277, 87 |
| Conread position: | 134-462 |
| Cow position: | chr4:47718299-47717991 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 275, 100 |
| Conread position: | 137-421 |
| Cow position: | chr4:59517715-59517431 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 135, 8 |
| Conread position: | 137-490 |
| Cow position: | chr4:54190170-54190499 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 271, 15 |
| Conread position: | 147-440 |
| Cow position: | chr4:8598828-8598544 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 123 |
| Conread position: | 150-490 |
| Cow position: | chr4:17926947-17926610 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 114 |
| Conread position: | 152-369 |
| Cow position: | chr4:11617747-11617967 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 126, 201 |
| Conread position: | 185-438 |
| Cow position: | chr4:60265445-60265194 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 161, 68 |
| Conread position: | 186-443 |
| Cow position: | chr4:1497410-1497155 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 139 |
| Conread position: | 223-490 |
| Cow position: | chr4:32211546-32211811 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 186, 120 |
| Conread position: | 251-489 |
| Cow position: | chr4:18425110-18424877 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 157, 91 |
| Conread position: | 275-490 |
| Cow position: | chr4:66179554-66179344 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 134, 13 |
Show alignments to all cow chromosomes.