Cow genome map

Conread name: rspc012_d20.y1

Conread position: 2-467
Cow position: chr5:59282027-59282478 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 47

Conread position: 3-404
Cow position: chr5:27000470-27000851 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 267
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 78, 99

Conread position: 3-439
Cow position: chr5:34202229-34202634 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 10

Conread position: 3-440
Cow position: chr5:6519161-6519575 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 91

Conread position: 3-464
Cow position: chr5:4384492-4384939 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 52

Conread position: 3-490
Cow position: chr5:416454-415984 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 71

Conread position: 3-490
Cow position: chr5:1342529-1342055 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 22

Conread position: 3-490
Cow position: chr5:2430866-2430394 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr5:2913717-2914189 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr5:4068256-4068728 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr5:32674475-32674004 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 131

Conread position: 3-490
Cow position: chr5:34695852-34696323 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 71

Conread position: 3-490
Cow position: chr5:37731611-37732084 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr5:46658967-46659470 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 339
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 72, 26

Conread position: 3-490
Cow position: chr5:46739335-46738846 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 46

Conread position: 3-490
Cow position: chr5:49120010-49119543 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr5:55627271-55627730 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 65

Conread position: 3-490
Cow position: chr5:61273903-61273443 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 139

Conread position: 3-490
Cow position: chr5:64782749-64782280 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 4-335
Cow position: chr5:42503998-42504341 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 225
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 240

Conread position: 4-462
Cow position: chr5:23716684-23716240 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 9

Conread position: 4-490
Cow position: chr5:3785078-3785542 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 68

Conread position: 7-279
Cow position: chr5:27060809-27060545 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 74, 103

Conread position: 7-490
Cow position: chr5:4019961-4019460 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 191

Conread position: 7-490
Cow position: chr5:47831856-47831366 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 337
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 75, 145

Conread position: 12-490
Cow position: chr5:24097925-24098387 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 62

Conread position: 12-490
Cow position: chr5:28006505-28006942 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 325
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 121, 63

Conread position: 15-326
Cow position: chr5:41963652-41963355 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 76, 0

Conread position: 15-480
Cow position: chr5:12682224-12681789 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 10

Conread position: 15-488
Cow position: chr5:6158914-6158458 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 34

Conread position: 16-348
Cow position: chr5:23688200-23687871 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 229
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 39, 52

Conread position: 16-489
Cow position: chr5:26090578-26090091 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 345
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 65, 83

Conread position: 17-489
Cow position: chr5:49594183-49593718 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 112

Conread position: 18-490
Cow position: chr5:41530291-41529833 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 35

Conread position: 36-490
Cow position: chr5:30578614-30579061 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 28

Conread position: 37-459
Cow position: chr5:34167355-34167767 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 271
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 127, 12

Conread position: 38-425
Cow position: chr5:58747191-58747558 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 42

Conread position: 50-489
Cow position: chr5:3504939-3504509 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 50-490
Cow position: chr5:10918107-10918536 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 55-488
Cow position: chr5:58195308-58195738 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 182

Conread position: 60-404
Cow position: chr5:10443891-10443555 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 242

Conread position: 60-408
Cow position: chr5:18663558-18663903 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 213

Conread position: 60-408
Cow position: chr5:23960797-23960454 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 201

Conread position: 60-431
Cow position: chr5:10776933-10776573 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 49

Conread position: 60-467
Cow position: chr5:46775403-46775804 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 190

Conread position: 60-488
Cow position: chr5:46663316-46663735 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 219

Conread position: 60-489
Cow position: chr5:46644025-46644436 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 29

Conread position: 60-490
Cow position: chr5:2530587-2531009 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 112

Conread position: 60-490
Cow position: chr5:3963790-3964209 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 66

Conread position: 60-490
Cow position: chr5:14379479-14379901 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 197

Conread position: 60-490
Cow position: chr5:26079907-26079480 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 113

Conread position: 60-490
Cow position: chr5:27909957-27909532 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 213

Conread position: 60-490
Cow position: chr5:31705888-31706314 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 179

Conread position: 60-490
Cow position: chr5:32771793-32772220 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 123

Conread position: 60-490
Cow position: chr5:45182781-45182371 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 71

Conread position: 60-490
Cow position: chr5:53714567-53714992 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 84

Conread position: 60-490
Cow position: chr5:59059929-59060359 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 301

Conread position: 60-490
Cow position: chr5:59144090-59144520 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 148

Conread position: 61-490
Cow position: chr5:10844562-10844136 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 66

Conread position: 61-490
Cow position: chr5:24576226-24576652 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 69

Conread position: 62-490
Cow position: chr5:48468959-48468538 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 75

Conread position: 68-357
Cow position: chr5:73490006-73489718 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 172
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 197, 0

Conread position: 81-488
Cow position: chr5:54793285-54792881 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 184

Conread position: 81-490
Cow position: chr5:48809379-48808977 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 51

Conread position: 84-296
Cow position: chr5:29437620-29437412 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 130, 47

Conread position: 84-466
Cow position: chr5:7273202-7273576 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 188

Conread position: 91-490
Cow position: chr5:32945223-32945613 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 114

Conread position: 94-490
Cow position: chr5:57483204-57482808 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 181

Conread position: 95-490
Cow position: chr5:14659744-14659355 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 254
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 45

Conread position: 104-399
Cow position: chr5:25001560-25001275 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 268, 14

Conread position: 104-490
Cow position: chr5:30088351-30087983 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 264
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 305, 121

Conread position: 105-490
Cow position: chr5:49101000-49101373 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 251
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 16, 81

Conread position: 106-439
Cow position: chr5:56858345-56858007 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 233
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 10, 101

Conread position: 107-286
Cow position: chr5:26095102-26095281 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 115-436
Cow position: chr5:46631045-46630740 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 228
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 294, 118

Conread position: 115-439
Cow position: chr5:23756210-23755905 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 217
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 55, 84

Conread position: 129-466
Cow position: chr5:32733863-32733532 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 43

Conread position: 129-487
Cow position: chr5:41359356-41358993 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 233
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 214

Conread position: 134-440
Cow position: chr5:49181672-49181961 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 275, 147

Conread position: 136-466
Cow position: chr5:39165413-39165083 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 217

Conread position: 136-488
Cow position: chr5:51162305-51162651 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 232
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 209, 43

Conread position: 137-431
Cow position: chr5:52804723-52805016 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 144

Conread position: 138-471
Cow position: chr5:68472172-68471843 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 218
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 275, 105

Conread position: 139-443
Cow position: chr5:76124159-76123860 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 99

Conread position: 139-491
Cow position: chr5:29008751-29009099 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 151

Conread position: 141-490
Cow position: chr5:18665354-18665700 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 131

Conread position: 141-490
Cow position: chr5:35299456-35299802 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 118

Conread position: 147-443
Cow position: chr5:23227659-23227950 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 158

Conread position: 155-466
Cow position: chr5:9687000-9686699 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 112

Conread position: 155-488
Cow position: chr5:45699688-45700020 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 31

Conread position: 155-489
Cow position: chr5:24329701-24330036 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 192

Conread position: 155-490
Cow position: chr5:26769220-26769549 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 142

Conread position: 155-490
Cow position: chr5:28030900-28031221 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 117

Conread position: 164-439
Cow position: chr5:41551506-41551237 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 9

Conread position: 166-490
Cow position: chr5:12644457-12644143 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 58, 116

Conread position: 181-467
Cow position: chr5:29123363-29123083 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 17, 46

Conread position: 182-453
Cow position: chr5:12185094-12185362 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 226, 96

Conread position: 189-490
Cow position: chr5:31102152-31101857 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 219, 76

Conread position: 223-490
Cow position: chr5:54932743-54932479 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 186, 60

Conread position: 251-490
Cow position: chr5:29042014-29042250 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 158, 32

Conread position: 254-490
Cow position: chr5:27569662-27569893 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 157, 24

Conread position: 257-490
Cow position: chr5:46005876-46005645 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 152, 85

Conread position: 305-490
Cow position: chr5:25207183-25207004 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 45

Show alignments to all cow chromosomes.