Cow genome map

Conread name: rspc012_d20.y1

Conread position: 3-275
Cow position: chr6:37477641-37477912 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 78, 98

Conread position: 3-314
Cow position: chr6:13318277-13317980 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 79, 57

Conread position: 3-318
Cow position: chr6:2111545-2111246 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 46, 0

Conread position: 3-348
Cow position: chr6:52735803-52736142 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 234
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 66, 50

Conread position: 3-407
Cow position: chr6:24238459-24238844 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-407
Cow position: chr6:43795316-43794912 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 281
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 46, 53

Conread position: 3-477
Cow position: chr6:11278287-11277833 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 65

Conread position: 3-488
Cow position: chr6:38231676-38232154 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 262

Conread position: 3-490
Cow position: chr6:3278542-3278070 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr6:3890079-3889599 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 46

Conread position: 3-490
Cow position: chr6:5951827-5951356 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 46

Conread position: 3-490
Cow position: chr6:6477053-6476574 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 9

Conread position: 3-490
Cow position: chr6:12093454-12092982 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 61

Conread position: 3-490
Cow position: chr6:15141762-15141295 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr6:19453350-19453803 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 79

Conread position: 3-490
Cow position: chr6:21686310-21686768 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr6:21971085-21971554 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr6:28274400-28274864 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 74

Conread position: 3-490
Cow position: chr6:34893599-34893129 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr6:36525453-36525923 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 70

Conread position: 3-490
Cow position: chr6:39437046-39437521 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 70

Conread position: 3-490
Cow position: chr6:47044016-47043551 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr6:50498041-50497578 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 12

Conread position: 3-490
Cow position: chr6:55544919-55544446 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 4-488
Cow position: chr6:13977918-13978399 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 80

Conread position: 4-490
Cow position: chr6:913040-913509 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 45

Conread position: 7-487
Cow position: chr6:30478499-30478968 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 281

Conread position: 7-489
Cow position: chr6:3488980-3488521 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 67

Conread position: 7-490
Cow position: chr6:44151163-44150676 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 77

Conread position: 15-488
Cow position: chr6:40314302-40314780 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 328
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 40, 249

Conread position: 33-490
Cow position: chr6:1823817-1823369 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 13

Conread position: 40-490
Cow position: chr6:15281108-15280662 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 24

Conread position: 50-466
Cow position: chr6:27468712-27469110 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 50-466
Cow position: chr6:27530550-27530146 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 50-490
Cow position: chr6:8201177-8201612 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 60-336
Cow position: chr6:21836659-21836371 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 29, 200

Conread position: 60-407
Cow position: chr6:6935672-6935328 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 236
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 168

Conread position: 60-408
Cow position: chr6:41757531-41757188 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 237
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 66

Conread position: 60-466
Cow position: chr6:28492058-28491657 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 35

Conread position: 60-486
Cow position: chr6:27169029-27169453 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 224

Conread position: 60-488
Cow position: chr6:332026-331590 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 295
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 295

Conread position: 60-490
Cow position: chr6:1405774-1405356 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 65

Conread position: 60-490
Cow position: chr6:2374163-2374584 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 202

Conread position: 60-490
Cow position: chr6:2554164-2554588 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 66

Conread position: 60-490
Cow position: chr6:7142012-7141591 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 101

Conread position: 60-490
Cow position: chr6:13103512-13103938 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 155

Conread position: 60-490
Cow position: chr6:17598828-17598399 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 287

Conread position: 60-490
Cow position: chr6:26671412-26670983 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 208

Conread position: 60-490
Cow position: chr6:28062804-28063218 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 71

Conread position: 60-490
Cow position: chr6:34126804-34127229 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 224

Conread position: 60-490
Cow position: chr6:35877262-35876838 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 142

Conread position: 60-490
Cow position: chr6:39907609-39908030 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 202

Conread position: 60-490
Cow position: chr6:40274711-40275139 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 6

Conread position: 60-490
Cow position: chr6:43617168-43617597 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 225

Conread position: 60-490
Cow position: chr6:44028510-44028928 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 66

Conread position: 60-490
Cow position: chr6:57870551-57870123 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 213

Conread position: 60-490
Cow position: chr6:68026234-68026662 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 283

Conread position: 67-442
Cow position: chr6:25357132-25357504 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 226
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 57, 13

Conread position: 75-488
Cow position: chr6:64713017-64713420 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 59

Conread position: 75-488
Cow position: chr6:64714584-64714994 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 59

Conread position: 81-246
Cow position: chr6:476569-476734 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 81-399
Cow position: chr6:52042-51730 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 81-490
Cow position: chr6:40555135-40554712 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 286
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 152, 223

Conread position: 81-490
Cow position: chr6:65822657-65822246 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 103

Conread position: 81-490
Cow position: chr6:65841064-65841475 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 183

Conread position: 81-490
Cow position: chr6:65880335-65880747 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 190

Conread position: 82-489
Cow position: chr6:20561633-20561230 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 183

Conread position: 88-487
Cow position: chr6:65900426-65900041 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 20

Conread position: 89-488
Cow position: chr6:65908916-65909305 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 176

Conread position: 91-487
Cow position: chr6:59919789-59919401 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 42

Conread position: 91-490
Cow position: chr6:13943398-13943791 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 252

Conread position: 92-440
Cow position: chr6:52803907-52804245 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 234
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 73, 169

Conread position: 96-490
Cow position: chr6:6566102-6566493 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 169

Conread position: 104-435
Cow position: chr6:7180161-7179853 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 302, 24

Conread position: 104-488
Cow position: chr6:10054127-10054491 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 22

Conread position: 106-275
Cow position: chr6:2885746-2885915 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 160, 12

Conread position: 106-422
Cow position: chr6:39161713-39162012 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 34

Conread position: 106-464
Cow position: chr6:42360166-42359825 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 239
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 270, 68

Conread position: 106-489
Cow position: chr6:1384342-1383966 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 180

Conread position: 114-314
Cow position: chr6:13276065-13276267 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 22

Conread position: 114-349
Cow position: chr6:66194467-66194234 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 223, 148

Conread position: 114-489
Cow position: chr6:701462-701834 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 22

Conread position: 114-489
Cow position: chr6:29311002-29311370 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 114-490
Cow position: chr6:17045571-17045939 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 152

Conread position: 122-434
Cow position: chr6:2401756-2402074 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 15, 225

Conread position: 122-488
Cow position: chr6:33388333-33388712 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 246

Conread position: 133-348
Cow position: chr6:28106238-28106026 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 146, 0

Conread position: 134-466
Cow position: chr6:68362787-68362463 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 138

Conread position: 134-490
Cow position: chr6:65007373-65007716 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 251
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 155, 68

Conread position: 138-424
Cow position: chr6:50138160-50138433 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 17

Conread position: 142-402
Cow position: chr6:11401168-11401425 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 123, 83

Conread position: 147-385
Cow position: chr6:33459121-33459361 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 125

Conread position: 148-440
Cow position: chr6:28509176-28509457 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 265, 11

Conread position: 150-489
Cow position: chr6:65927489-65927817 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 258, 86

Conread position: 152-490
Cow position: chr6:35421014-35420702 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 257, 38

Conread position: 153-490
Cow position: chr6:42723373-42723044 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 130

Conread position: 154-490
Cow position: chr6:58409360-58409032 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 156-458
Cow position: chr6:66231365-66231652 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 252, 123

Conread position: 162-447
Cow position: chr6:42926936-42927222 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 190

Conread position: 165-462
Cow position: chr6:10559079-10558804 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 59

Conread position: 166-490
Cow position: chr6:8761741-8761420 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 97

Conread position: 271-488
Cow position: chr6:37115802-37116017 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 99, 16

Show alignments to all cow chromosomes.