Cow genome map

Conread name: rspc012_d20.y1

Conread position: 3-279
Cow position: chr7:68779360-68779094 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 9

Conread position: 3-327
Cow position: chr7:30156803-30156479 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 263

Conread position: 3-347
Cow position: chr7:47049926-47050250 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 235
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 0

Conread position: 3-385
Cow position: chr7:13538230-13537862 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 71

Conread position: 3-467
Cow position: chr7:38396724-38397168 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 3-487
Cow position: chr7:27143833-27144294 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 320
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 216, 71

Conread position: 3-487
Cow position: chr7:27786130-27786591 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 63

Conread position: 3-488
Cow position: chr7:53990256-53990711 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 122

Conread position: 3-490
Cow position: chr7:447122-446661 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 68

Conread position: 3-490
Cow position: chr7:1448989-1449455 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 9

Conread position: 3-490
Cow position: chr7:8145740-8145270 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 46

Conread position: 3-490
Cow position: chr7:14140095-14139626 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 46

Conread position: 3-490
Cow position: chr7:21235513-21235041 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 71

Conread position: 3-490
Cow position: chr7:34148606-34149062 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 3-490
Cow position: chr7:48632898-48633366 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 123

Conread position: 4-490
Cow position: chr7:3154276-3154750 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 64

Conread position: 4-490
Cow position: chr7:24808969-24808497 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 45

Conread position: 4-490
Cow position: chr7:26025527-26026009 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 135

Conread position: 4-490
Cow position: chr7:54602348-54602821 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 18

Conread position: 6-447
Cow position: chr7:39109218-39108791 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 124

Conread position: 7-436
Cow position: chr7:25439009-25439441 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 305
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 75, 132

Conread position: 7-490
Cow position: chr7:11467257-11466767 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 51

Conread position: 7-490
Cow position: chr7:20799947-20799472 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 329
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 75, 263

Conread position: 12-490
Cow position: chr7:29469368-29469834 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 121

Conread position: 14-490
Cow position: chr7:46902565-46902106 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 60

Conread position: 15-236
Cow position: chr7:10431888-10431666 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 26, 50

Conread position: 15-273
Cow position: chr7:67425886-67426142 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 6, 117

Conread position: 15-385
Cow position: chr7:29371251-29370900 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 259
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 40, 31

Conread position: 15-488
Cow position: chr7:67798366-67798818 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 59

Conread position: 15-490
Cow position: chr7:51013481-51013939 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 57

Conread position: 22-494
Cow position: chr7:63020364-63020827 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 42

Conread position: 31-490
Cow position: chr7:21309742-21310179 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 98

Conread position: 33-488
Cow position: chr7:34485433-34485876 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 17

Conread position: 37-388
Cow position: chr7:20429479-20429146 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 227
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 65

Conread position: 38-376
Cow position: chr7:20107007-20106698 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 223
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 38-490
Cow position: chr7:55538392-55537947 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 8

Conread position: 50-447
Cow position: chr7:20294411-20294799 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 91

Conread position: 50-488
Cow position: chr7:21984934-21985367 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 50-489
Cow position: chr7:1373114-1372682 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 50-490
Cow position: chr7:21128110-21127687 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 14

Conread position: 50-490
Cow position: chr7:39791271-39791710 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 14

Conread position: 60-376
Cow position: chr7:6720090-6720403 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 201

Conread position: 60-489
Cow position: chr7:17328-16903 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 78

Conread position: 60-490
Cow position: chr7:3235140-3234713 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 78

Conread position: 60-490
Cow position: chr7:3301612-3301184 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 67

Conread position: 60-490
Cow position: chr7:6643330-6642908 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 225

Conread position: 60-490
Cow position: chr7:6649111-6648685 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 209

Conread position: 60-490
Cow position: chr7:20529153-20528705 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 297
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 67

Conread position: 60-490
Cow position: chr7:20555239-20555684 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 140

Conread position: 60-490
Cow position: chr7:27102568-27102144 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 200

Conread position: 60-490
Cow position: chr7:27531314-27530893 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 276
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 26, 62

Conread position: 60-490
Cow position: chr7:47374539-47374967 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 168

Conread position: 60-490
Cow position: chr7:61558756-61559183 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 70

Conread position: 60-490
Cow position: chr7:63384896-63385320 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 206

Conread position: 81-247
Cow position: chr7:33406645-33406479 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 81-490
Cow position: chr7:64242372-64241972 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 184

Conread position: 85-488
Cow position: chr7:31634174-31634577 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 261
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 17

Conread position: 86-464
Cow position: chr7:55281229-55280858 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 252
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 11, 191

Conread position: 91-439
Cow position: chr7:58378614-58378271 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 263, 132

Conread position: 94-440
Cow position: chr7:52120502-52120159 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 33

Conread position: 102-424
Cow position: chr7:53015087-53015388 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 71, 28

Conread position: 104-326
Cow position: chr7:31864450-31864662 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 104-466
Cow position: chr7:750515-750878 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 66

Conread position: 105-373
Cow position: chr7:41876889-41876629 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 105-458
Cow position: chr7:49290189-49290533 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 109

Conread position: 114-489
Cow position: chr7:522239-521875 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 27

Conread position: 114-490
Cow position: chr7:35287965-35287590 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 156

Conread position: 115-419
Cow position: chr7:1736578-1736285 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 34, 0

Conread position: 115-490
Cow position: chr7:5661956-5662350 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 249

Conread position: 122-466
Cow position: chr7:1400750-1400415 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 17

Conread position: 129-490
Cow position: chr7:30119926-30119567 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 221
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 279, 208

Conread position: 133-488
Cow position: chr7:20307168-20306824 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 25

Conread position: 136-490
Cow position: chr7:26890426-26890771 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 128

Conread position: 136-493
Cow position: chr7:51084241-51084591 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 234
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 126, 59

Conread position: 137-348
Cow position: chr7:68907231-68907447 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 117, 0

Conread position: 138-422
Cow position: chr7:25686584-25686312 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 270, 115

Conread position: 141-440
Cow position: chr7:62680031-62679723 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 225, 0

Conread position: 146-462
Cow position: chr7:67416674-67416987 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 81

Conread position: 147-490
Cow position: chr7:19925181-19924844 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 118

Conread position: 150-444
Cow position: chr7:68858458-68858168 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 78

Conread position: 152-440
Cow position: chr7:59136067-59136353 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 55, 20

Conread position: 153-403
Cow position: chr7:68076178-68076417 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 153-483
Cow position: chr7:37416658-37416981 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 218
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 128

Conread position: 155-435
Cow position: chr7:35297956-35297683 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 126

Conread position: 155-455
Cow position: chr7:41870288-41869997 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 73

Conread position: 155-466
Cow position: chr7:36084972-36085283 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 84

Conread position: 155-490
Cow position: chr7:68436403-68436075 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 5

Conread position: 156-490
Cow position: chr7:41489775-41490087 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 44

Conread position: 161-490
Cow position: chr7:11446200-11446526 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 99

Conread position: 162-443
Cow position: chr7:1358028-1357748 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 192

Conread position: 163-489
Cow position: chr7:38536167-38536487 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 104, 19

Conread position: 168-466
Cow position: chr7:21976084-21975789 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 104

Conread position: 176-490
Cow position: chr7:45949488-45949179 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 84

Conread position: 177-477
Cow position: chr7:51911691-51911396 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 205-490
Cow position: chr7:67811807-67812092 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 82, 141

Conread position: 226-490
Cow position: chr7:993943-994206 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 121

Conread position: 229-490
Cow position: chr7:7256932-7257178 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 82

Conread position: 243-490
Cow position: chr7:23816240-23816000 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 166, 36

Conread position: 272-490
Cow position: chr7:6489554-6489340 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 137, 75

Conread position: 283-490
Cow position: chr7:33406478-33406272 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 125, 64

Conread position: 306-490
Cow position: chr7:26893538-26893720 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 103, 44

Conread position: 346-490
Cow position: chr7:21241967-21241826 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 8

Show alignments to all cow chromosomes.