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Cow genome map

           
Conread name:
           
rspc012_i4.y1
        

               
Conread position:
               
1-297
               

               
Cow position:
               
chr1:25281610-25281918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr1:97622155-97622533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr1:36880327-36879953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr1:20950762-20950576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chr1:43447781-43448041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 159
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr1:45019756-45020077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr1:10778611-10778242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr1:60281420-60281195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
14, 96
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr1:57420684-57420907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr1:33206834-33207063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr1:69415662-69415943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
4-285
               

               
Cow position:
               
chr1:93228572-93228292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
4-315
               

               
Cow position:
               
chr1:2765461-2765157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
14, 122
               

               
Conread position:
               
4-316
               

               
Cow position:
               
chr1:71295252-71295569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
4-374
               

               
Cow position:
               
chr1:26702160-26702516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
4-385
               

               
Cow position:
               
chr1:77620593-77620216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 140
               

               
Conread position:
               
4-386
               

               
Cow position:
               
chr1:54199332-54199711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 216
               

               
Conread position:
               
5-159
               

               
Cow position:
               
chr1:82880690-82880536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
5-163
               

               
Cow position:
               
chr1:56225831-56225681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chr1:9437257-9437428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-177
               

               
Cow position:
               
chr1:72813662-72813485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr1:19568896-19568682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
74, 155
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr1:101632291-101632512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr1:64189547-64189264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
5-296
               

               
Cow position:
               
chr1:70435044-70434751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
5-301
               

               
Cow position:
               
chr1:8869613-8869911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
14, 136
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chr1:90423036-90423348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
5-318
               

               
Cow position:
               
chr1:90864247-90864563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr1:32341163-32341498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
5-362
               

               
Cow position:
               
chr1:89185136-89185497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
5-374
               

               
Cow position:
               
chr1:21508439-21508072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
5-379
               

               
Cow position:
               
chr1:21934127-21934503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
13, 156
               

               
Conread position:
               
5-386
               

               
Cow position:
               
chr1:36998231-36997866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
6-386
               

               
Cow position:
               
chr1:1802190-1801816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 121
               

               
Conread position:
               
7-267
               

               
Cow position:
               
chr1:40482362-40482624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 38
               

               
Conread position:
               
7-374
               

               
Cow position:
               
chr1:85596988-85596627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 181
               

               
Conread position:
               
7-386
               

               
Cow position:
               
chr1:2745398-2745016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr1:75933312-75933068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
12-315
               

               
Cow position:
               
chr1:34686226-34685935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
12-316
               

               
Cow position:
               
chr1:98594611-98594307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
12-355
               

               
Cow position:
               
chr1:77720202-77720527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
13-282
               

               
Cow position:
               
chr1:53540426-53540163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
13-349
               

               
Cow position:
               
chr1:73522111-73522436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
14-386
               

               
Cow position:
               
chr1:71946334-71946695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 155
               

               
Conread position:
               
15-162
               

               
Cow position:
               
chr1:71716547-71716399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
12, 83
               

               
Conread position:
               
15-178
               

               
Cow position:
               
chr1:72105448-72105286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
21, 137
               

               
Conread position:
               
15-315
               

               
Cow position:
               
chr1:6166282-6165991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
54, 92
               

               
Conread position:
               
15-374
               

               
Cow position:
               
chr1:82861816-82861454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
17-168
               

               
Cow position:
               
chr1:26894943-26895091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 98
               

               
Conread position:
               
17-179
               

               
Cow position:
               
chr1:54179810-54179650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
17-179
               

               
Cow position:
               
chr1:89785943-89785781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
154, 56
               

               
Conread position:
               
17-201
               

               
Cow position:
               
chr1:31272409-31272591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chr1:64572548-64572361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
17-204
               

               
Cow position:
               
chr1:7609653-7609461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
17-204
               

               
Cow position:
               
chr1:62519396-62519204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
17-206
               

               
Cow position:
               
chr1:33409592-33409783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
17-209
               

               
Cow position:
               
chr1:98413805-98413608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
17-214
               

               
Cow position:
               
chr1:97696780-97696577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
17-215
               

               
Cow position:
               
chr1:49077298-49077507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
17-216
               

               
Cow position:
               
chr1:95558070-95557871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
144, 119
               

               
Conread position:
               
17-239
               

               
Cow position:
               
chr1:86578998-86578764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
60, 200
               

               
Conread position:
               
17-242
               

               
Cow position:
               
chr1:61742428-61742651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
141, 47
               

               
Conread position:
               
17-246
               

               
Cow position:
               
chr1:1499660-1499892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
145, 70
               

               
Conread position:
               
17-264
               

               
Cow position:
               
chr1:95654680-95654925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
17-273
               

               
Cow position:
               
chr1:16961977-16962232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
144, 56
               

               
Conread position:
               
17-286
               

               
Cow position:
               
chr1:78809909-78809652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
17-295
               

               
Cow position:
               
chr1:44507006-44506728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 191
               

               
Conread position:
               
17-302
               

               
Cow position:
               
chr1:56477625-56477348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 143
               

               
Conread position:
               
17-306
               

               
Cow position:
               
chr1:24534221-24534494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
17-311
               

               
Cow position:
               
chr1:45555399-45555106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 174
               

               
Conread position:
               
17-315
               

               
Cow position:
               
chr1:73761322-73761613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
17-327
               

               
Cow position:
               
chr1:16855666-16855960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 57
               

               
Conread position:
               
17-343
               

               
Cow position:
               
chr1:29626879-29627203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 52
               

               
Conread position:
               
17-348
               

               
Cow position:
               
chr1:83747976-83747640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
55, 85
               

               
Conread position:
               
17-372
               

               
Cow position:
               
chr1:95176972-95176618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 106
               

               
Conread position:
               
17-374
               

               
Cow position:
               
chr1:39418078-39418437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 201
               

               
Conread position:
               
17-374
               

               
Cow position:
               
chr1:42360319-42359938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 332
               

               
Conread position:
               
17-376
               

               
Cow position:
               
chr1:11659680-11659325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
17-379
               

               
Cow position:
               
chr1:60032566-60032927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 61
               

               
Conread position:
               
17-379
               

               
Cow position:
               
chr1:84283106-84282737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 37
               

               
Conread position:
               
17-380
               

               
Cow position:
               
chr1:81913118-81913475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
17-385
               

               
Cow position:
               
chr1:100421858-100421515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 53
               

               
Conread position:
               
17-385
               

               
Cow position:
               
chr1:102266235-102266601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
17-386
               

               
Cow position:
               
chr1:51394451-51394079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 107
               

               
Conread position:
               
17-386
               

               
Cow position:
               
chr1:71045788-71045420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 186
               

               
Conread position:
               
17-386
               

               
Cow position:
               
chr1:72034891-72035260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
17-386
               

               
Cow position:
               
chr1:79001904-79002284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 170
               

               
Conread position:
               
17-386
               

               
Cow position:
               
chr1:97231993-97231645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
18-190
               

               
Cow position:
               
chr1:3352666-3352834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
155, 56
               

               
Conread position:
               
18-210
               

               
Cow position:
               
chr1:15169301-15169487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
178, 53
               

               
Conread position:
               
18-232
               

               
Cow position:
               
chr1:95178986-95178773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
136, 57
               

               
Conread position:
               
18-247
               

               
Cow position:
               
chr1:31806912-31806681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
18-267
               

               
Cow position:
               
chr1:19885415-19885172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
18-301
               

               
Cow position:
               
chr1:93110584-93110871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
18-331
               

               
Cow position:
               
chr1:99609403-99609090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
18-343
               

               
Cow position:
               
chr1:26688439-26688766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
18-372
               

               
Cow position:
               
chr1:43352622-43352966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 141
               

               
Conread position:
               
18-374
               

               
Cow position:
               
chr1:3034965-3035309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 54
               

               
Conread position:
               
18-374
               

               
Cow position:
               
chr1:69264842-69264503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 56
               

               
Conread position:
               
20-118
               

               
Cow position:
               
chr1:30983463-30983558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
20-121
               

               
Cow position:
               
chr1:58037049-58036948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
20-135
               

               
Cow position:
               
chr1:8347153-8347039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
20-139
               

               
Cow position:
               
chr1:100474264-100474143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
20-145
               

               
Cow position:
               
chr1:71796280-71796408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
20-153
               

               
Cow position:
               
chr1:635655-635787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-157
               

               
Cow position:
               
chr1:22823935-22823800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
20-161
               

               
Cow position:
               
chr1:48769832-48769694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
119, 55
               

               
Conread position:
               
20-161
               

               
Cow position:
               
chr1:81580208-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 106
               

               
Conread position:
               
20-162
               

               
Cow position:
               
chr1:42541628-42541485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
20-162
               

               
Cow position:
               
chr1:61542888-61543029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
20-162
               

               
Cow position:
               
chr1:87936928-87936788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
20-163
               

               
Cow position:
               
chr1:78794201-78794337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
20-166
               

               
Cow position:
               
chr1:42482232-42482087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 52
               

               
Conread position:
               
20-167
               

               
Cow position:
               
chr1:6826266-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
20-167
               

               
Cow position:
               
chr1:92434030-92433884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
20-168
               

               
Cow position:
               
chr1:92989620-92989473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
20-171
               

               
Cow position:
               
chr1:8984652-8984805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
20-174
               

               
Cow position:
               
chr1:55819088-55818936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
20-178
               

               
Cow position:
               
chr1:42868906-42869063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 118
               

               
Conread position:
               
20-189
               

               
Cow position:
               
chr1:85550048-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-192
               

               
Cow position:
               
chr1:48696741-48696906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
20-192
               

               
Cow position:
               
chr1:86073626-86073453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 81
               

               
Conread position:
               
20-200
               

               
Cow position:
               
chr1:23512629-23512804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-200
               

               
Cow position:
               
chr1:30047567-30047740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
20-200
               

               
Cow position:
               
chr1:65318605-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
144, 78
               

               
Conread position:
               
20-202
               

               
Cow position:
               
chr1:101834849-101834673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
20-204
               

               
Cow position:
               
chr1:5580091-5579906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 146
               

               
Conread position:
               
20-206
               

               
Cow position:
               
chr1:22192799-22192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
20-206
               

               
Cow position:
               
chr1:42545749-42545939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
20-210
               

               
Cow position:
               
chr1:101946684-101946866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-211
               

               
Cow position:
               
chr1:51684837-51684643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 176
               

               
Conread position:
               
20-212
               

               
Cow position:
               
chr1:70026316-70026505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-214
               

               
Cow position:
               
chr1:77683382-77683194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
20-215
               

               
Cow position:
               
chr1:3243966-3243774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
141, 55
               

               
Conread position:
               
20-215
               

               
Cow position:
               
chr1:24777959-24778148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
20-215
               

               
Cow position:
               
chr1:38753953-38753753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
48, 71
               

               
Conread position:
               
20-215
               

               
Cow position:
               
chr1:51417801-51417612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
20-216
               

               
Cow position:
               
chr1:40192665-40192848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
20-216
               

               
Cow position:
               
chr1:63530588-63530410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
20-216
               

               
Cow position:
               
chr1:74927914-74927715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
20-217
               

               
Cow position:
               
chr1:93554866-93554677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
138, 57
               

               
Conread position:
               
20-218
               

               
Cow position:
               
chr1:7748243-7748050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
138, 59
               

               
Conread position:
               
20-218
               

               
Cow position:
               
chr1:7752409-7752216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
138, 59
               

               
Conread position:
               
20-219
               

               
Cow position:
               
chr1:9470368-9470566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-219
               

               
Cow position:
               
chr1:75142027-75141834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
147, 54
               

               
Conread position:
               
20-219
               

               
Cow position:
               
chr1:96081510-96081315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
20-221
               

               
Cow position:
               
chr1:55428926-55429126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
20-222
               

               
Cow position:
               
chr1:43703439-43703237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 61
               

               
Conread position:
               
20-222
               

               
Cow position:
               
chr1:91834253-91834056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 46
               

               
Conread position:
               
20-226
               

               
Cow position:
               
chr1:25387083-25386877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
20-227
               

               
Cow position:
               
chr1:91874880-91875083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
20-231
               

               
Cow position:
               
chr1:80631728-80631522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
135, 53
               

               
Conread position:
               
20-234
               

               
Cow position:
               
chr1:50345576-50345363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 121
               

               
Conread position:
               
20-239
               

               
Cow position:
               
chr1:68763654-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-240
               

               
Cow position:
               
chr1:59518952-59518736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
20-241
               

               
Cow position:
               
chr1:42398161-42398383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
20-243
               

               
Cow position:
               
chr1:54156704-54156929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
20-244
               

               
Cow position:
               
chr1:71228123-71227887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
20-246
               

               
Cow position:
               
chr1:6788253-6788481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
20-246
               

               
Cow position:
               
chr1:32001283-32001512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
61, 170
               

               
Conread position:
               
20-246
               

               
Cow position:
               
chr1:46030331-46030544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
138, 49
               

               
Conread position:
               
20-246
               

               
Cow position:
               
chr1:68863067-68862844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
20-247
               

               
Cow position:
               
chr1:42174558-42174781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 173
               

               
Conread position:
               
20-253
               

               
Cow position:
               
chr1:43340583-43340821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
20-253
               

               
Cow position:
               
chr1:81471163-81470930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 34
               

               
Conread position:
               
20-256
               

               
Cow position:
               
chr1:90976058-90976285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
20-261
               

               
Cow position:
               
chr1:98372662-98372422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
144, 67
               

               
Conread position:
               
20-262
               

               
Cow position:
               
chr1:98311100-98310854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr1:75383011-75382782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
20-266
               

               
Cow position:
               
chr1:43872289-43872543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 245
               

               
Conread position:
               
20-270
               

               
Cow position:
               
chr1:74955987-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 185
               

               
Conread position:
               
20-274
               

               
Cow position:
               
chr1:6304834-6305088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 58
               

               
Conread position:
               
20-274
               

               
Cow position:
               
chr1:15333925-15333661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 170
               

               
Conread position:
               
20-274
               

               
Cow position:
               
chr1:52956288-52956040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
18, 183
               

               
Conread position:
               
20-274
               

               
Cow position:
               
chr1:98461316-98461071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-277
               

               
Cow position:
               
chr1:34771473-34771726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
20-277
               

               
Cow position:
               
chr1:71953106-71952865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
20-277
               

               
Cow position:
               
chr1:96472469-96472207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
170, 51
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr1:52052687-52052932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
20-284
               

               
Cow position:
               
chr1:81515263-81515010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
20-284
               

               
Cow position:
               
chr1:89076603-89076865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
20-285
               

               
Cow position:
               
chr1:64804072-64804338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
20-286
               

               
Cow position:
               
chr1:54162774-54163041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 181
               

               
Conread position:
               
20-287
               

               
Cow position:
               
chr1:79278416-79278674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
20-292
               

               
Cow position:
               
chr1:100512639-100512359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
51, 196
               

               
Conread position:
               
20-294
               

               
Cow position:
               
chr1:26729748-26729489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
20-295
               

               
Cow position:
               
chr1:7443008-7442745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 10
               

               
Conread position:
               
20-296
               

               
Cow position:
               
chr1:31234901-31235175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 65
               

               
Conread position:
               
20-299
               

               
Cow position:
               
chr1:51445916-51445635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
20-299
               

               
Cow position:
               
chr1:56635128-56634852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
52, 36
               

               
Conread position:
               
20-300
               

               
Cow position:
               
chr1:49317466-49317764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
20-300
               

               
Cow position:
               
chr1:71119551-71119266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
20-303
               

               
Cow position:
               
chr1:57395906-57396177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
144, 53
               

               
Conread position:
               
20-303
               

               
Cow position:
               
chr1:93528729-93528442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
20-304
               

               
Cow position:
               
chr1:68618902-68619186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
20-305
               

               
Cow position:
               
chr1:1165629-1165350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 54
               

               
Conread position:
               
20-305
               

               
Cow position:
               
chr1:36932184-36931909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
20-305
               

               
Cow position:
               
chr1:42138888-42138615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 90
               

               
Conread position:
               
20-305
               

               
Cow position:
               
chr1:50930946-50931219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
20-305
               

               
Cow position:
               
chr1:78791274-78791557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
61, 141
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chr1:5023732-5023991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
59, 100
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chr1:37706940-37707220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chr1:72141605-72141313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chr1:93810459-93810192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
92, 49
               

               
Conread position:
               
20-307
               

               
Cow position:
               
chr1:47269161-47268878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
143, 70
               

               
Conread position:
               
20-311
               

               
Cow position:
               
chr1:46839635-46839338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 87
               

               
Conread position:
               
20-311
               

               
Cow position:
               
chr1:68826874-68827161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 184
               

               
Conread position:
               
20-313
               

               
Cow position:
               
chr1:13414061-13413769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
20-313
               

               
Cow position:
               
chr1:31390559-31390842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
66, 142
               

               
Conread position:
               
20-313
               

               
Cow position:
               
chr1:31871459-31871162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
20-313
               

               
Cow position:
               
chr1:42555296-42555012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 169
               

               
Conread position:
               
20-313
               

               
Cow position:
               
chr1:77880700-77880973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
55, 86
               

               
Conread position:
               
20-313
               

               
Cow position:
               
chr1:79165052-79165350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 53
               

               
Conread position:
               
20-314
               

               
Cow position:
               
chr1:76470685-76470400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr1:5162014-5162313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 212
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr1:29975569-29975857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr1:34856598-34856889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr1:57635492-57635207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr1:74084158-74084449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 187
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr1:74947087-74947377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
57, 220
               

               
Conread position:
               
20-315
               

               
Cow position:
               
chr1:81868699-81868987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 54
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chr1:45535737-45535441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 253
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chr1:48581159-48580871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chr1:53039671-53039958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chr1:57297512-57297235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 180
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chr1:64302214-64302493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 171
               

               
Conread position:
               
20-316
               

               
Cow position:
               
chr1:69540319-69540022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
170, 54
               

               
Conread position:
               
20-319
               

               
Cow position:
               
chr1:88971085-88970799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
20-324
               

               
Cow position:
               
chr1:49433234-49433535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 50
               

               
Conread position:
               
20-325
               

               
Cow position:
               
chr1:73196201-73196510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
20-326
               

               
Cow position:
               
chr1:33996894-33997183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
20-327
               

               
Cow position:
               
chr1:4032662-4032364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 191
               

               
Conread position:
               
20-328
               

               
Cow position:
               
chr1:53370115-53369798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 107
               

               
Conread position:
               
20-333
               

               
Cow position:
               
chr1:99642339-99642649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 15
               

               
Conread position:
               
20-338
               

               
Cow position:
               
chr1:72286038-72286332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
20-339
               

               
Cow position:
               
chr1:1956303-1956614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 110
               

               
Conread position:
               
20-343
               

               
Cow position:
               
chr1:3751908-3752231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 106
               

               
Conread position:
               
20-348
               

               
Cow position:
               
chr1:1991389-1991723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
20-360
               

               
Cow position:
               
chr1:20000718-20001056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
20-360
               

               
Cow position:
               
chr1:47009063-47008727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 72
               

               
Conread position:
               
20-361
               

               
Cow position:
               
chr1:53622988-53622662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 54
               

               
Conread position:
               
20-364
               

               
Cow position:
               
chr1:49796029-49795691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 54
               

               
Conread position:
               
20-364
               

               
Cow position:
               
chr1:68845454-68845789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
20-364
               

               
Cow position:
               
chr1:72068805-72069136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 173
               

               
Conread position:
               
20-366
               

               
Cow position:
               
chr1:18936804-18937144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 31
               

               
Conread position:
               
20-366
               

               
Cow position:
               
chr1:21577839-21577496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
20-367
               

               
Cow position:
               
chr1:41697088-41696749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
20-367
               

               
Cow position:
               
chr1:79663643-79663976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
20-367
               

               
Cow position:
               
chr1:98360366-98360726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
20-368
               

               
Cow position:
               
chr1:22448551-22448897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 182
               

               
Conread position:
               
20-370
               

               
Cow position:
               
chr1:4573550-4573218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
20-371
               

               
Cow position:
               
chr1:85151151-85151495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:6794891-6795251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 137
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:11226216-11226564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 54
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:15547501-15547150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 41
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:19466083-19465740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 53
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:21787366-21787004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:30441987-30441635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:35162440-35162085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:53308359-53308711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:53425206-53424873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 61
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:54258597-54258253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:55135861-55135524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:55163949-55163606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:56719332-56718994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 51
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:71136183-71135846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 120
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:72011783-72012125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 51
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:82406519-82406875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:89741970-89742331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 76
               

               
Conread position:
               
20-374
               

               
Cow position:
               
chr1:90868411-90868757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 59
               

               
Conread position:
               
20-377
               

               
Cow position:
               
chr1:20099399-20099039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 82
               

               
Conread position:
               
20-377
               

               
Cow position:
               
chr1:63434776-63435125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 61
               

               
Conread position:
               
20-379
               

               
Cow position:
               
chr1:96365694-96365349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 108
               

               
Conread position:
               
20-380
               

               
Cow position:
               
chr1:12870979-12871347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
20-380
               

               
Cow position:
               
chr1:69539721-69539371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 50
               

               
Conread position:
               
20-380
               

               
Cow position:
               
chr1:95215160-95215502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 47
               

               
Conread position:
               
20-380
               

               
Cow position:
               
chr1:100552000-100551636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 171
               

               
Conread position:
               
20-380
               

               
Cow position:
               
chr1:102647243-102647595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 65
               

               
Conread position:
               
20-384
               

               
Cow position:
               
chr1:90641067-90640703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 267
               

               
Conread position:
               
20-385
               

               
Cow position:
               
chr1:3323898-3323524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 89
               

               
Conread position:
               
20-385
               

               
Cow position:
               
chr1:31499654-31499297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
20-385
               

               
Cow position:
               
chr1:53495498-53495132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
20-385
               

               
Cow position:
               
chr1:76019663-76020010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 118
               

               
Conread position:
               
20-385
               

               
Cow position:
               
chr1:95017499-95017841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
20-385
               

               
Cow position:
               
chr1:100770723-100771064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 54
               

               
Conread position:
               
20-385
               

               
Cow position:
               
chr1:102349716-102350099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 174
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:8645-8292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 55
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:8349288-8349638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:10719448-10719821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 188
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:11729205-11728862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:31934537-31934176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 51
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:34159865-34159504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:37309489-37309841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:48444164-48444509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:53520941-53520581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:54206784-54207146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:61723989-61724351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:68445779-68446129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:69694961-69695337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:77462393-77462035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:81290539-81290190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:82505006-82504636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:86113370-86113744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 35
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:89835283-89834904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 222
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:94226525-94226879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
20-386
               

               
Cow position:
               
chr1:101916196-101915838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 43
               

               
Conread position:
               
20-387
               

               
Cow position:
               
chr1:41181875-41181510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 68
               

               
Conread position:
               
20-396
               

               
Cow position:
               
chr1:96964348-96963976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 55
               

               
Conread position:
               
21-142
               

               
Cow position:
               
chr1:32788154-32788274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 90
               

               
Conread position:
               
21-163
               

               
Cow position:
               
chr1:22466479-22466623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
21-176
               

               
Cow position:
               
chr1:98511956-98511802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
129, 53
               

               
Conread position:
               
21-184
               

               
Cow position:
               
chr1:78838825-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
21-194
               

               
Cow position:
               
chr1:2975967-2976138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
135, 30
               

               
Conread position:
               
21-213
               

               
Cow position:
               
chr1:45553211-45553393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 146
               

               
Conread position:
               
21-216
               

               
Cow position:
               
chr1:86110708-86110897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 57
               

               
Conread position:
               
21-219
               

               
Cow position:
               
chr1:12978711-12978512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
21-227
               

               
Cow position:
               
chr1:20544329-20544119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
9, 143
               

               
Conread position:
               
21-245
               

               
Cow position:
               
chr1:100393136-100393355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
21-284
               

               
Cow position:
               
chr1:55705217-55705483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
21-295
               

               
Cow position:
               
chr1:71078931-71079193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
21-301
               

               
Cow position:
               
chr1:51531782-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
21-303
               

               
Cow position:
               
chr1:100762106-100761843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
21-306
               

               
Cow position:
               
chr1:1916198-1916487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 191
               

               
Conread position:
               
21-306
               

               
Cow position:
               
chr1:54478358-54478071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 198
               

               
Conread position:
               
21-315
               

               
Cow position:
               
chr1:6958902-6958619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
21-374
               

               
Cow position:
               
chr1:100450145-100450511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 194
               

               
Conread position:
               
21-382
               

               
Cow position:
               
chr1:26929946-26930295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
21-384
               

               
Cow position:
               
chr1:53207678-53208024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
21-385
               

               
Cow position:
               
chr1:53458727-53458376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 183
               

               
Conread position:
               
21-385
               

               
Cow position:
               
chr1:74822476-74822120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 53
               

               
Conread position:
               
21-386
               

               
Cow position:
               
chr1:22730763-22730431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
21-386
               

               
Cow position:
               
chr1:83582904-83583285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 92
               

               
Conread position:
               
21-386
               

               
Cow position:
               
chr1:84255796-84255423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 342
               

               
Conread position:
               
21-395
               

               
Cow position:
               
chr1:100741312-100740948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
22-245
               

               
Cow position:
               
chr1:4414178-4414398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
23-144
               

               
Cow position:
               
chr1:45223608-45223487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 114
               

               
Conread position:
               
23-153
               

               
Cow position:
               
chr1:86061958-86062088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
23-162
               

               
Cow position:
               
chr1:30418014-30418149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
23-174
               

               
Cow position:
               
chr1:80422303-80422153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
141, 38
               

               
Conread position:
               
23-194
               

               
Cow position:
               
chr1:87440495-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
23-196
               

               
Cow position:
               
chr1:6228557-6228730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
23-196
               

               
Cow position:
               
chr1:49297391-49297214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 21
               

               
Conread position:
               
23-198
               

               
Cow position:
               
chr1:91023438-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
23-200
               

               
Cow position:
               
chr1:22525905-22525730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
54, 111
               

               
Conread position:
               
23-204
               

               
Cow position:
               
chr1:87197847-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
23-205
               

               
Cow position:
               
chr1:6961935-6961754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
23-205
               

               
Cow position:
               
chr1:17196600-17196783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
23-206
               

               
Cow position:
               
chr1:91811809-91811631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
179, 99
               

               
Conread position:
               
23-210
               

               
Cow position:
               
chr1:88913347-88913158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
23-211
               

               
Cow position:
               
chr1:14206122-14206316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
23-213
               

               
Cow position:
               
chr1:85647753-85647944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
23-215
               

               
Cow position:
               
chr1:484440-484630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
23-222
               

               
Cow position:
               
chr1:18780307-18780503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
23-225
               

               
Cow position:
               
chr1:67305212-67305415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
8, 119
               

               
Conread position:
               
23-234
               

               
Cow position:
               
chr1:20667715-20667921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
23-237
               

               
Cow position:
               
chr1:24445600-24445811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
23-240
               

               
Cow position:
               
chr1:31607861-31608084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
65, 174
               

               
Conread position:
               
23-246
               

               
Cow position:
               
chr1:64421358-64421139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
23-246
               

               
Cow position:
               
chr1:96277025-96277246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 194
               

               
Conread position:
               
23-256
               

               
Cow position:
               
chr1:724767-724533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
23-262
               

               
Cow position:
               
chr1:99039328-99039560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
23-270
               

               
Cow position:
               
chr1:68996207-68995956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
132, 51
               

               
Conread position:
               
23-273
               

               
Cow position:
               
chr1:15691362-15691119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 116
               

               
Conread position:
               
23-287
               

               
Cow position:
               
chr1:43389021-43389280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
23-302
               

               
Cow position:
               
chr1:3244877-3244603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 87
               

               
Conread position:
               
23-303
               

               
Cow position:
               
chr1:78857302-78857570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
23-305
               

               
Cow position:
               
chr1:81563772-81563483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 233
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chr1:5135683-5135942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
194, 28
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chr1:11770265-11770544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 52
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chr1:47233451-47233726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chr1:71253526-71253806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chr1:75744889-75744609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 181
               

               
Conread position:
               
23-308
               

               
Cow position:
               
chr1:70538638-70538350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
23-309
               

               
Cow position:
               
chr1:62920195-62919923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 124
               

               
Conread position:
               
23-310
               

               
Cow position:
               
chr1:52995051-52994769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
23-313
               

               
Cow position:
               
chr1:3923773-3924051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
23-313
               

               
Cow position:
               
chr1:38544437-38544705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
23-315
               

               
Cow position:
               
chr1:61884940-61884655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
23-315
               

               
Cow position:
               
chr1:65103648-65103375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 78
               

               
Conread position:
               
23-316
               

               
Cow position:
               
chr1:41252379-41252664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
23-316
               

               
Cow position:
               
chr1:43505556-43505262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 180
               

               
Conread position:
               
23-325
               

               
Cow position:
               
chr1:61741940-61742238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
23-329
               

               
Cow position:
               
chr1:89509894-89510206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
23-343
               

               
Cow position:
               
chr1:25383695-25383374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 25
               

               
Conread position:
               
23-343
               

               
Cow position:
               
chr1:81613416-81613097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
23-370
               

               
Cow position:
               
chr1:100800379-100800042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
23-373
               

               
Cow position:
               
chr1:41056705-41056366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr1:48105404-48105755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr1:66430320-66429982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 47
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr1:80870142-80869787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr1:81355678-81356022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 124
               

               
Conread position:
               
23-374
               

               
Cow position:
               
chr1:85774484-85774145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
23-380
               

               
Cow position:
               
chr1:15050375-15050036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
140, 49
               

               
Conread position:
               
23-380
               

               
Cow position:
               
chr1:73960730-73960374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 58
               

               
Conread position:
               
23-380
               

               
Cow position:
               
chr1:98551747-98551394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 222
               

               
Conread position:
               
23-384
               

               
Cow position:
               
chr1:3790041-3790384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
340, 17
               

               
Conread position:
               
23-384
               

               
Cow position:
               
chr1:85028980-85028632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
23-385
               

               
Cow position:
               
chr1:1403454-1403793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
23-385
               

               
Cow position:
               
chr1:52039665-52039307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:22827184-22826836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:24133033-24133382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 65
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:24235492-24235849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 62
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:43822430-43822046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 278
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:70828930-70828575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 104
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:81569001-81569367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:89349992-89349651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:91800572-91800929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr1:95499469-95499826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 38
               

               
Conread position:
               
23-387
               

               
Cow position:
               
chr1:68817770-68818141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 181
               

               
Conread position:
               
23-391
               

               
Cow position:
               
chr1:5872940-5873310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 72
               

               
Conread position:
               
23-391
               

               
Cow position:
               
chr1:92963422-92963053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
23-394
               

               
Cow position:
               
chr1:45288844-45289209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
24-159
               

               
Cow position:
               
chr1:6972552-6972421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
24-186
               

               
Cow position:
               
chr1:648351-648188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
24-189
               

               
Cow position:
               
chr1:43311746-43311913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 52
               

               
Conread position:
               
24-189
               

               
Cow position:
               
chr1:92996865-92997037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
24-204
               

               
Cow position:
               
chr1:41115689-41115868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
24-210
               

               
Cow position:
               
chr1:42175748-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
24-211
               

               
Cow position:
               
chr1:14309006-14309198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
24-215
               

               
Cow position:
               
chr1:16060978-16061183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 165
               

               
Conread position:
               
24-224
               

               
Cow position:
               
chr1:69127140-69127336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
24-227
               

               
Cow position:
               
chr1:24876289-24876093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 35
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr1:6867439-6867672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr1:13810673-13810457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr1:25734894-25734662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
140, 66
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr1:63138867-63138647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
24-258
               

               
Cow position:
               
chr1:86279439-86279211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
24-267
               

               
Cow position:
               
chr1:97779018-97778783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
24-281
               

               
Cow position:
               
chr1:62291672-62291912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
24-283
               

               
Cow position:
               
chr1:88926358-88926609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
8, 32
               

               
Conread position:
               
24-287
               

               
Cow position:
               
chr1:3429483-3429741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 41
               

               
Conread position:
               
24-288
               

               
Cow position:
               
chr1:10942068-10942325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
24-288
               

               
Cow position:
               
chr1:10964318-10964061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
24-298
               

               
Cow position:
               
chr1:97611634-97611896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
24-299
               

               
Cow position:
               
chr1:10655508-10655233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
24-299
               

               
Cow position:
               
chr1:88618622-88618348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 92
               

               
Conread position:
               
24-300
               

               
Cow position:
               
chr1:84239083-84239352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 167
               

               
Conread position:
               
24-301
               

               
Cow position:
               
chr1:92369762-92369470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 271
               

               
Conread position:
               
24-313
               

               
Cow position:
               
chr1:4291192-4290900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 188
               

               
Conread position:
               
24-316
               

               
Cow position:
               
chr1:82337750-82338046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 228
               

               
Conread position:
               
24-319
               

               
Cow position:
               
chr1:60707430-60707139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
24-326
               

               
Cow position:
               
chr1:43839555-43839256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
24-331
               

               
Cow position:
               
chr1:38278002-38278324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
68, 208
               

               
Conread position:
               
24-338
               

               
Cow position:
               
chr1:635220-634908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
24-349
               

               
Cow position:
               
chr1:68217335-68217654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 70
               

               
Conread position:
               
24-367
               

               
Cow position:
               
chr1:73561621-73561961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
24-373
               

               
Cow position:
               
chr1:61391758-61392111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 229
               

               
Conread position:
               
24-374
               

               
Cow position:
               
chr1:57639489-57639829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 141
               

               
Conread position:
               
24-374
               

               
Cow position:
               
chr1:80988377-80988030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
24-377
               

               
Cow position:
               
chr1:30034559-30034227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 50
               

               
Conread position:
               
24-380
               

               
Cow position:
               
chr1:76222662-76223017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
24-384
               

               
Cow position:
               
chr1:874680-874314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
24-384
               

               
Cow position:
               
chr1:44125609-44125978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 171
               

               
Conread position:
               
24-385
               

               
Cow position:
               
chr1:20205056-20204695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
24-385
               

               
Cow position:
               
chr1:63596028-63596389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
24-386
               

               
Cow position:
               
chr1:3137952-3137595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 40
               

               
Conread position:
               
24-386
               

               
Cow position:
               
chr1:44155275-44154936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
24-386
               

               
Cow position:
               
chr1:68951653-68951312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
24-386
               

               
Cow position:
               
chr1:100400167-100400529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 51
               

               
Conread position:
               
24-387
               

               
Cow position:
               
chr1:1981087-1981443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
24-387
               

               
Cow position:
               
chr1:53374459-53374102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
24-391
               

               
Cow position:
               
chr1:81228308-81228667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
24-396
               

               
Cow position:
               
chr1:28177034-28176675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
24-396
               

               
Cow position:
               
chr1:73584383-73584757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
25-136
               

               
Cow position:
               
chr1:95153247-95153134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
25-244
               

               
Cow position:
               
chr1:70028605-70028389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
25-246
               

               
Cow position:
               
chr1:72103875-72103655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
25-274
               

               
Cow position:
               
chr1:7971437-7971211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
25-274
               

               
Cow position:
               
chr1:93044046-93043806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
54, 87
               

               
Conread position:
               
25-289
               

               
Cow position:
               
chr1:27145626-27145887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 49
               

               
Conread position:
               
25-306
               

               
Cow position:
               
chr1:10115769-10116047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
139, 84
               

               
Conread position:
               
25-315
               

               
Cow position:
               
chr1:57263967-57264246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 166
               

               
Conread position:
               
25-316
               

               
Cow position:
               
chr1:37321973-37322267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 205
               

               
Conread position:
               
25-316
               

               
Cow position:
               
chr1:80900145-80899847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 262
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr1:52435297-52434984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
25-374
               

               
Cow position:
               
chr1:44769084-44769428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
25-374
               

               
Cow position:
               
chr1:55357262-55357599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 45
               

               
Conread position:
               
25-374
               

               
Cow position:
               
chr1:68276441-68276088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 68
               

               
Conread position:
               
26-148
               

               
Cow position:
               
chr1:30189174-30189049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
26-170
               

               
Cow position:
               
chr1:47288265-47288120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 49
               

               
Conread position:
               
26-315
               

               
Cow position:
               
chr1:56748625-56748330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 260
               

               
Conread position:
               
26-374
               

               
Cow position:
               
chr1:64251021-64251384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
26-377
               

               
Cow position:
               
chr1:39068932-39069280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 49
               

               
Conread position:
               
26-377
               

               
Cow position:
               
chr1:44165110-44164758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 256
               

               
Conread position:
               
26-381
               

               
Cow position:
               
chr1:78783572-78783219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
26-385
               

               
Cow position:
               
chr1:91816747-91817101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
28-203
               

               
Cow position:
               
chr1:10952204-10952375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
44, 131
               

               
Conread position:
               
28-341
               

               
Cow position:
               
chr1:5409593-5409897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
28-385
               

               
Cow position:
               
chr1:15311885-15311538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
29-184
               

               
Cow position:
               
chr1:100817575-100817424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
29-189
               

               
Cow position:
               
chr1:39224905-39225063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
29-204
               

               
Cow position:
               
chr1:12989073-12988892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 114
               

               
Conread position:
               
29-207
               

               
Cow position:
               
chr1:86512152-86511974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 40
               

               
Conread position:
               
29-220
               

               
Cow position:
               
chr1:75347646-75347451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
29-246
               

               
Cow position:
               
chr1:28563545-28563760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
29-246
               

               
Cow position:
               
chr1:83593787-83593999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 44
               

               
Conread position:
               
29-253
               

               
Cow position:
               
chr1:94261557-94261349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
129, 22
               

               
Conread position:
               
29-260
               

               
Cow position:
               
chr1:47883796-47884038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
29-303
               

               
Cow position:
               
chr1:89485600-89485343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
43, 159
               

               
Conread position:
               
29-349
               

               
Cow position:
               
chr1:100706152-100705840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 48
               

               
Conread position:
               
29-359
               

               
Cow position:
               
chr1:666387-666056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
29-385
               

               
Cow position:
               
chr1:91039151-91039489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
29-396
               

               
Cow position:
               
chr1:11913858-11914215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
29-396
               

               
Cow position:
               
chr1:67290883-67290527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 44
               

               
Conread position:
               
30-152
               

               
Cow position:
               
chr1:24406877-24406995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
30-161
               

               
Cow position:
               
chr1:92982744-92982875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
30-168
               

               
Cow position:
               
chr1:3955459-3955594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
30-173
               

               
Cow position:
               
chr1:35600276-35600420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
30-189
               

               
Cow position:
               
chr1:43855321-43855162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
30-204
               

               
Cow position:
               
chr1:86682540-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
30-237
               

               
Cow position:
               
chr1:9534185-9533993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
128, 37
               

               
Conread position:
               
30-241
               

               
Cow position:
               
chr1:58754774-58754971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr1:56674106-56674321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
127, 102
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr1:65025289-65025065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
30-261
               

               
Cow position:
               
chr1:70094354-70094131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
132, 34
               

               
Conread position:
               
30-273
               

               
Cow position:
               
chr1:98557764-98558002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
30-280
               

               
Cow position:
               
chr1:87072719-87072479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
30-290
               

               
Cow position:
               
chr1:51818962-51818706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
43, 172
               

               
Conread position:
               
30-293
               

               
Cow position:
               
chr1:4402163-4401909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
133, 44
               

               
Conread position:
               
30-306
               

               
Cow position:
               
chr1:29900945-29901208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
30-306
               

               
Cow position:
               
chr1:53423700-53423427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
30-310
               

               
Cow position:
               
chr1:24655978-24655705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 44
               

               
Conread position:
               
30-315
               

               
Cow position:
               
chr1:63905454-63905732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
30-328
               

               
Cow position:
               
chr1:67616547-67616263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
30-356
               

               
Cow position:
               
chr1:48730809-48731125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
30-357
               

               
Cow position:
               
chr1:66138341-66138018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 45
               

               
Conread position:
               
30-367
               

               
Cow position:
               
chr1:88652651-88652319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
30-374
               

               
Cow position:
               
chr1:80973583-80973942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 185
               

               
Conread position:
               
30-380
               

               
Cow position:
               
chr1:31348417-31348758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 178
               

               
Conread position:
               
30-385
               

               
Cow position:
               
chr1:94526522-94526165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
30-386
               

               
Cow position:
               
chr1:22729076-22728718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 289
               

               
Conread position:
               
30-386
               

               
Cow position:
               
chr1:57575744-57576093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
30-386
               

               
Cow position:
               
chr1:78092057-78091701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 19
               

               
Conread position:
               
30-386
               

               
Cow position:
               
chr1:101634732-101634374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
30-387
               

               
Cow position:
               
chr1:56618630-56619028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 268
               

               
Conread position:
               
31-157
               

               
Cow position:
               
chr1:70291588-70291463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
31-161
               

               
Cow position:
               
chr1:80942567-80942437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
31-168
               

               
Cow position:
               
chr1:7023140-7023003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
31-204
               

               
Cow position:
               
chr1:69532575-69532745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
102, 50
               

               
Conread position:
               
31-206
               

               
Cow position:
               
chr1:64962648-64962824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 71
               

               
Conread position:
               
31-207
               

               
Cow position:
               
chr1:85826366-85826190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
36, 162
               

               
Conread position:
               
31-210
               

               
Cow position:
               
chr1:44110780-44110593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
31-213
               

               
Cow position:
               
chr1:95922356-95922541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
31-214
               

               
Cow position:
               
chr1:67345704-67345524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
31-227
               

               
Cow position:
               
chr1:49028576-49028771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
31-235
               

               
Cow position:
               
chr1:99061903-99062102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
31-264
               

               
Cow position:
               
chr1:41954222-41954463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 196
               

               
Conread position:
               
31-266
               

               
Cow position:
               
chr1:84015898-84015660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
31-274
               

               
Cow position:
               
chr1:98030942-98030695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
41, 126
               

               
Conread position:
               
31-290
               

               
Cow position:
               
chr1:25886056-25886310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
31-300
               

               
Cow position:
               
chr1:6077919-6077649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr1:55146818-55146552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
31-308
               

               
Cow position:
               
chr1:25793415-25793693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
31-315
               

               
Cow position:
               
chr1:6941479-6941206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
31-345
               

               
Cow position:
               
chr1:8243396-8243081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
31-355
               

               
Cow position:
               
chr1:81472890-81472578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
31-356
               

               
Cow position:
               
chr1:33811949-33811633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 70
               

               
Conread position:
               
31-370
               

               
Cow position:
               
chr1:78184716-78184392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
37, 180
               

               
Conread position:
               
31-377
               

               
Cow position:
               
chr1:7657290-7657641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
31-380
               

               
Cow position:
               
chr1:84240911-84240584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
344, 42
               

               
Conread position:
               
31-385
               

               
Cow position:
               
chr1:68782617-68782989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 255
               

               
Conread position:
               
31-386
               

               
Cow position:
               
chr1:3167054-3167397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
31-386
               

               
Cow position:
               
chr1:44836204-44836563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 69
               

               
Conread position:
               
31-386
               

               
Cow position:
               
chr1:61725095-61725444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
31-386
               

               
Cow position:
               
chr1:68253612-68253260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 64
               

               
Conread position:
               
31-386
               

               
Cow position:
               
chr1:78794717-78795084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
31-386
               

               
Cow position:
               
chr1:82884374-82884716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
31-386
               

               
Cow position:
               
chr1:91066132-91066479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 174
               

               
Conread position:
               
31-386
               

               
Cow position:
               
chr1:101822487-101822828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 17
               

               
Conread position:
               
32-194
               

               
Cow position:
               
chr1:83410463-83410300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
32-195
               

               
Cow position:
               
chr1:8128950-8129111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr1:3776601-3776865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 32
               

               
Conread position:
               
32-351
               

               
Cow position:
               
chr1:97755538-97755230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
51, 156
               

               
Conread position:
               
32-374
               

               
Cow position:
               
chr1:4374319-4374657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
32-374
               

               
Cow position:
               
chr1:7739966-7739654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
32-374
               

               
Cow position:
               
chr1:33331073-33331389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
32-386
               

               
Cow position:
               
chr1:3340956-3340599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 92
               

               
Conread position:
               
32-386
               

               
Cow position:
               
chr1:84170494-84170171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
33-145
               

               
Cow position:
               
chr1:4221822-4221933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
33-298
               

               
Cow position:
               
chr1:3962681-3962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
33-412
               

               
Cow position:
               
chr1:39510041-39510414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
150, 33
               

               
Conread position:
               
34-292
               

               
Cow position:
               
chr1:71818445-71818699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
34-313
               

               
Cow position:
               
chr1:61284070-61283770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
34-374
               

               
Cow position:
               
chr1:12595885-12596223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 167
               

               
Conread position:
               
35-277
               

               
Cow position:
               
chr1:85593791-85593550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
35-283
               

               
Cow position:
               
chr1:43357995-43358243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 174
               

               
Conread position:
               
35-285
               

               
Cow position:
               
chr1:55194453-55194694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
35-286
               

               
Cow position:
               
chr1:53671721-53671981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
5, 126
               

               
Conread position:
               
35-384
               

               
Cow position:
               
chr1:57900726-57901066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 50
               

               
Conread position:
               
36-295
               

               
Cow position:
               
chr1:95057068-95056815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
36-366
               

               
Cow position:
               
chr1:11873347-11873666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
36-385
               

               
Cow position:
               
chr1:4027213-4026858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 236
               

               
Conread position:
               
37-215
               

               
Cow position:
               
chr1:81638418-81638238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
37-221
               

               
Cow position:
               
chr1:10519025-10519205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 145
               

               
Conread position:
               
37-287
               

               
Cow position:
               
chr1:95050074-95050332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
37-324
               

               
Cow position:
               
chr1:99095377-99095096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 166
               

               
Conread position:
               
38-246
               

               
Cow position:
               
chr1:32013966-32013765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
120, 51
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chr1:75967443-75967183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
38-336
               

               
Cow position:
               
chr1:3061572-3061873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
36, 139
               

               
Conread position:
               
38-385
               

               
Cow position:
               
chr1:89341974-89342319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 155
               

               
Conread position:
               
41-162
               

               
Cow position:
               
chr1:46103863-46103987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
41-411
               

               
Cow position:
               
chr1:45673725-45673355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
5, 151
               

               
Conread position:
               
42-386
               

               
Cow position:
               
chr1:99136421-99136761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
43-386
               

               
Cow position:
               
chr1:41004353-41004698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 225
               

               
Conread position:
               
44-300
               

               
Cow position:
               
chr1:4294063-4293816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
26, 132
               

               
Conread position:
               
44-311
               

               
Cow position:
               
chr1:102825811-102826069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
114, 73
               

               
Conread position:
               
46-185
               

               
Cow position:
               
chr1:33080878-33081010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
48-174
               

               
Cow position:
               
chr1:22394797-22394671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
113, 27
               

               
Conread position:
               
48-190
               

               
Cow position:
               
chr1:47886481-47886628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
48-202
               

               
Cow position:
               
chr1:98396958-98397107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
48-219
               

               
Cow position:
               
chr1:60372263-60372432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
48-257
               

               
Cow position:
               
chr1:82443452-82443661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
48-260
               

               
Cow position:
               
chr1:101867352-101867150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
48-293
               

               
Cow position:
               
chr1:24597659-24597414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
48-303
               

               
Cow position:
               
chr1:96078371-96078121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
48-305
               

               
Cow position:
               
chr1:50679277-50679536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 155
               

               
Conread position:
               
48-306
               

               
Cow position:
               
chr1:56658035-56657790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
116, 89
               

               
Conread position:
               
48-306
               

               
Cow position:
               
chr1:96712805-96713065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
48-332
               

               
Cow position:
               
chr1:33720120-33719837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
48-339
               

               
Cow position:
               
chr1:101007618-101007899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
48-348
               

               
Cow position:
               
chr1:34000913-34000612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 39
               

               
Conread position:
               
48-370
               

               
Cow position:
               
chr1:58419938-58419609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
48-379
               

               
Cow position:
               
chr1:31765380-31765719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 240
               

               
Conread position:
               
48-385
               

               
Cow position:
               
chr1:53595324-53594995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
48-396
               

               
Cow position:
               
chr1:78689938-78689582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
49-246
               

               
Cow position:
               
chr1:5858686-5858882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
49-277
               

               
Cow position:
               
chr1:78154722-78154947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
49-311
               

               
Cow position:
               
chr1:19998040-19998291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
49-386
               

               
Cow position:
               
chr1:7350549-7350207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
50-160
               

               
Cow position:
               
chr1:78697771-78697878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
50-221
               

               
Cow position:
               
chr1:32596457-32596283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
50-246
               

               
Cow position:
               
chr1:89437938-89438127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
51-211
               

               
Cow position:
               
chr1:97938962-97938809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
51-253
               

               
Cow position:
               
chr1:771825-772021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
111, 139
               

               
Conread position:
               
51-329
               

               
Cow position:
               
chr1:21954231-21954493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
51-345
               

               
Cow position:
               
chr1:91142157-91142445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
51-367
               

               
Cow position:
               
chr1:95100955-95100654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
51-385
               

               
Cow position:
               
chr1:96478698-96478351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
52-277
               

               
Cow position:
               
chr1:342145-342367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
109, 7
               

               
Conread position:
               
52-340
               

               
Cow position:
               
chr1:4027868-4027576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
52-374
               

               
Cow position:
               
chr1:67821212-67821537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 127
               

               
Conread position:
               
53-374
               

               
Cow position:
               
chr1:14528195-14528519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 108
               

               
Conread position:
               
54-282
               

               
Cow position:
               
chr1:5393876-5394098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
103, 20
               

               
Conread position:
               
54-282
               

               
Cow position:
               
chr1:6766020-6765797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
55-306
               

               
Cow position:
               
chr1:81363983-81363743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
57, 20
               

               
Conread position:
               
55-372
               

               
Cow position:
               
chr1:100324746-100325054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 104
               

               
Conread position:
               
55-386
               

               
Cow position:
               
chr1:1878023-1877696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
55-386
               

               
Cow position:
               
chr1:102519659-102519346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
56-305
               

               
Cow position:
               
chr1:81343796-81343546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
56-377
               

               
Cow position:
               
chr1:6322201-6321882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
56-386
               

               
Cow position:
               
chr1:96184022-96184339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
57-310
               

               
Cow position:
               
chr1:77658063-77657811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
58-207
               

               
Cow position:
               
chr1:65909522-65909370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
58-316
               

               
Cow position:
               
chr1:84116388-84116141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 27
               

               
Conread position:
               
59-374
               

               
Cow position:
               
chr1:87216452-87216133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
60-288
               

               
Cow position:
               
chr1:61564109-61563879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 119
               

               
Conread position:
               
60-371
               

               
Cow position:
               
chr1:40311000-40310694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
60-380
               

               
Cow position:
               
chr1:8532219-8532540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 135
               

               
Conread position:
               
60-386
               

               
Cow position:
               
chr1:39101050-39100708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
103, 15
               

               
Conread position:
               
61-241
               

               
Cow position:
               
chr1:89083098-89082921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
61-257
               

               
Cow position:
               
chr1:51654402-51654208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 150
               

               
Conread position:
               
61-349
               

               
Cow position:
               
chr1:87888389-87888112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
61-386
               

               
Cow position:
               
chr1:69940978-69941296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 8
               

               
Conread position:
               
62-315
               

               
Cow position:
               
chr1:80555206-80555439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
62-338
               

               
Cow position:
               
chr1:46939870-46940142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
62-386
               

               
Cow position:
               
chr1:38688464-38688144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 46
               

               
Conread position:
               
63-373
               

               
Cow position:
               
chr1:49839494-49839204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
64-227
               

               
Cow position:
               
chr1:51435606-51435769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
65-196
               

               
Cow position:
               
chr1:29481636-29481772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
65-206
               

               
Cow position:
               
chr1:12424992-12424858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
65-309
               

               
Cow position:
               
chr1:49131130-49131376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
65-315
               

               
Cow position:
               
chr1:51628512-51628762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
65-372
               

               
Cow position:
               
chr1:11772090-11772398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
65-374
               

               
Cow position:
               
chr1:57305814-57305512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
65-374
               

               
Cow position:
               
chr1:83982385-83982695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
65-374
               

               
Cow position:
               
chr1:92370374-92370678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
65-385
               

               
Cow position:
               
chr1:85361846-85361525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 59
               

               
Conread position:
               
66-192
               

               
Cow position:
               
chr1:90595568-90595696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
66-204
               

               
Cow position:
               
chr1:53369190-53369054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 34
               

               
Conread position:
               
66-246
               

               
Cow position:
               
chr1:24542596-24542773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 125
               

               
Conread position:
               
66-306
               

               
Cow position:
               
chr1:14379550-14379781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
66-374
               

               
Cow position:
               
chr1:52754155-52754462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
66-374
               

               
Cow position:
               
chr1:81859243-81859546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
66-376
               

               
Cow position:
               
chr1:69407351-69407044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
66-379
               

               
Cow position:
               
chr1:6200556-6200244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
66-386
               

               
Cow position:
               
chr1:79333739-79334057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
66-386
               

               
Cow position:
               
chr1:90914071-90913753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
66-386
               

               
Cow position:
               
chr1:99837103-99837417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
67-309
               

               
Cow position:
               
chr1:28567450-28567692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
142, 8
               

               
Conread position:
               
67-311
               

               
Cow position:
               
chr1:88529816-88530042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
67-374
               

               
Cow position:
               
chr1:20002253-20002571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 125
               

               
Conread position:
               
68-155
               

               
Cow position:
               
chr1:362770-362683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
68-216
               

               
Cow position:
               
chr1:31960209-31960059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
68-321
               

               
Cow position:
               
chr1:51836553-51836306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 90
               

               
Conread position:
               
68-377
               

               
Cow position:
               
chr1:27495469-27495176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 59
               

               
Conread position:
               
70-207
               

               
Cow position:
               
chr1:63314811-63314672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
70-262
               

               
Cow position:
               
chr1:101207803-101207625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
70-329
               

               
Cow position:
               
chr1:20422224-20422483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
42, 91
               

               
Conread position:
               
70-330
               

               
Cow position:
               
chr1:32631442-32631195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
70-374
               

               
Cow position:
               
chr1:52329549-52329846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
70-385
               

               
Cow position:
               
chr1:23633930-23634227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
70-386
               

               
Cow position:
               
chr1:82378769-82378465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
229, 129
               

               
Conread position:
               
71-211
               

               
Cow position:
               
chr1:80311446-80311310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
71-215
               

               
Cow position:
               
chr1:101280740-101280880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
72-306
               

               
Cow position:
               
chr1:1185717-1185488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chr1:95327173-95327414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
73-301
               

               
Cow position:
               
chr1:81277224-81277447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 120
               

               
Conread position:
               
73-309
               

               
Cow position:
               
chr1:21835922-21835694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr1:98380596-98380871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
75-373
               

               
Cow position:
               
chr1:19144949-19145246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 53
               

               
Conread position:
               
75-383
               

               
Cow position:
               
chr1:94212206-94211906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
75-386
               

               
Cow position:
               
chr1:94875699-94876015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 100
               

               
Conread position:
               
76-304
               

               
Cow position:
               
chr1:102468991-102469214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
202, 37
               

               
Conread position:
               
76-315
               

               
Cow position:
               
chr1:23099874-23099637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 25
               

               
Conread position:
               
76-362
               

               
Cow position:
               
chr1:1053565-1053281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 115
               

               
Conread position:
               
76-366
               

               
Cow position:
               
chr1:26895852-26896135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
76-385
               

               
Cow position:
               
chr1:79591082-79590770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
77-224
               

               
Cow position:
               
chr1:87211917-87211772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
77-244
               

               
Cow position:
               
chr1:98619185-98619016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
82, 54
               

               
Conread position:
               
77-380
               

               
Cow position:
               
chr1:102756455-102756747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 109
               

               
Conread position:
               
78-379
               

               
Cow position:
               
chr1:56229218-56228927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 53
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr1:20125587-20125285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
78-386
               

               
Cow position:
               
chr1:2075367-2075658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 112
               

               
Conread position:
               
79-173
               

               
Cow position:
               
chr1:59020249-59020154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
79-174
               

               
Cow position:
               
chr1:3607782-3607687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-197
               

               
Cow position:
               
chr1:101789100-101789218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-202
               

               
Cow position:
               
chr1:72422601-72422724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-219
               

               
Cow position:
               
chr1:87095258-87095399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
79-239
               

               
Cow position:
               
chr1:101837018-101836857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
79-294
               

               
Cow position:
               
chr1:40531141-40531348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
84, 109
               

               
Conread position:
               
79-373
               

               
Cow position:
               
chr1:36874985-36874700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
79-374
               

               
Cow position:
               
chr1:731970-732244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
79-379
               

               
Cow position:
               
chr1:22628668-22628964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
79-385
               

               
Cow position:
               
chr1:21131123-21131413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
200, 80
               

               
Conread position:
               
80-199
               

               
Cow position:
               
chr1:73536709-73536587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
80-296
               

               
Cow position:
               
chr1:20288089-20287876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
80-303
               

               
Cow position:
               
chr1:77118565-77118774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
80-317
               

               
Cow position:
               
chr1:52506584-52506806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
80-374
               

               
Cow position:
               
chr1:41735653-41735937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
81-335
               

               
Cow position:
               
chr1:98708410-98708163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 105
               

               
Conread position:
               
81-386
               

               
Cow position:
               
chr1:81180002-81180316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
82-253
               

               
Cow position:
               
chr1:18697378-18697551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
82-316
               

               
Cow position:
               
chr1:52774564-52774782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
82-386
               

               
Cow position:
               
chr1:68282772-68282463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 305
               

               
Conread position:
               
83-231
               

               
Cow position:
               
chr1:11832800-11832944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr1:49753896-49753732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
84-298
               

               
Cow position:
               
chr1:20799852-20799629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
74, 60
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr1:56711652-56711883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
84-382
               

               
Cow position:
               
chr1:43211732-43211451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
84-395
               

               
Cow position:
               
chr1:23969071-23969375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
85-307
               

               
Cow position:
               
chr1:89395567-89395339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
85-311
               

               
Cow position:
               
chr1:97806754-97806536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
87-164
               

               
Cow position:
               
chr1:499988-499911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
78
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-236
               

               
Cow position:
               
chr1:21342568-21342726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
87-282
               

               
Cow position:
               
chr1:26201183-26200993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
87-294
               

               
Cow position:
               
chr1:70236324-70236532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 130
               

               
Conread position:
               
87-316
               

               
Cow position:
               
chr1:4385325-4385087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
50, 89
               

               
Conread position:
               
88-305
               

               
Cow position:
               
chr1:89729011-89729207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
207, 92
               

               
Conread position:
               
90-385
               

               
Cow position:
               
chr1:77857376-77857669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 86
               

               
Conread position:
               
91-292
               

               
Cow position:
               
chr1:86484925-86484717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
91-306
               

               
Cow position:
               
chr1:61246199-61246402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
91-379
               

               
Cow position:
               
chr1:71325288-71325572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
93-244
               

               
Cow position:
               
chr1:70344000-70343850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
93-290
               

               
Cow position:
               
chr1:19545141-19545334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
93-386
               

               
Cow position:
               
chr1:14239849-14240137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 66
               

               
Conread position:
               
93-386
               

               
Cow position:
               
chr1:73995658-73995359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 253
               

               
Conread position:
               
93-391
               

               
Cow position:
               
chr1:44136508-44136788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 86
               

               
Conread position:
               
94-299
               

               
Cow position:
               
chr1:30504428-30504227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
95-380
               

               
Cow position:
               
chr1:36613319-36613601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 110
               

               
Conread position:
               
96-386
               

               
Cow position:
               
chr1:31414006-31414296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 94
               

               
Conread position:
               
100-253
               

               
Cow position:
               
chr1:7450081-7449934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
100-274
               

               
Cow position:
               
chr1:14981170-14981338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
100-328
               

               
Cow position:
               
chr1:31347965-31348186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 87
               

               
Conread position:
               
100-373
               

               
Cow position:
               
chr1:54732517-54732762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
100-386
               

               
Cow position:
               
chr1:43893875-43893597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 15
               

               
Conread position:
               
102-303
               

               
Cow position:
               
chr1:31899583-31899779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
102-309
               

               
Cow position:
               
chr1:64160289-64160087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 91
               

               
Conread position:
               
103-386
               

               
Cow position:
               
chr1:57087295-57087579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
54, 179
               

               
Conread position:
               
104-374
               

               
Cow position:
               
chr1:52496730-52496457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 101
               

               
Conread position:
               
105-382
               

               
Cow position:
               
chr1:69445310-69445047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
107-282
               

               
Cow position:
               
chr1:7186739-7186560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
108-245
               

               
Cow position:
               
chr1:56413572-56413710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
110-311
               

               
Cow position:
               
chr1:3757897-3757696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
111-330
               

               
Cow position:
               
chr1:55686277-55686494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 143
               

               
Conread position:
               
113-318
               

               
Cow position:
               
chr1:52488023-52488221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:24909150-24909410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 177
               

               
Conread position:
               
114-304
               

               
Cow position:
               
chr1:74013322-74013516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
114-374
               

               
Cow position:
               
chr1:33717165-33716901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
120-253
               

               
Cow position:
               
chr1:99570534-99570663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
43, 80
               

               
Conread position:
               
120-305
               

               
Cow position:
               
chr1:95071915-95071736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
120-320
               

               
Cow position:
               
chr1:13614782-13614984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
122-374
               

               
Cow position:
               
chr1:40062381-40062129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 130
               

               
Conread position:
               
123-305
               

               
Cow position:
               
chr1:77891745-77891563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
126-265
               

               
Cow position:
               
chr1:99792740-99792601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
127-386
               

               
Cow position:
               
chr1:73757012-73756765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 61
               
Show alignments to all cow chromosomes.