Non-Coding RNA Search

Cow genome map


           Conread name:
           rspc014_m21.y1
        

               Conread position:
               1-128
               

               Cow position:
               chr11:6329053-6329187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1-134
               

               Cow position:
               chr11:68570865-68570722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1-134
               

               Cow position:
               chr11:73478428-73478563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               34, 50
               

               Conread position:
               1-141
               

               Cow position:
               chr11:49105865-49106009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-141
               

               Cow position:
               chr11:62808841-62808697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               1-141
               

               Cow position:
               chr11:77207856-77207999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               30, 57
               

               Conread position:
               1-185
               

               Cow position:
               chr11:17968768-17968590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               34, 57
               

               Conread position:
               1-186
               

               Cow position:
               chr11:53130619-53130806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               34, 55
               

               Conread position:
               1-190
               

               Cow position:
               chr11:8105590-8105782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               34, 55
               

               Conread position:
               1-190
               

               Cow position:
               chr11:31900855-31901043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               32, 145
               

               Conread position:
               1-190
               

               Cow position:
               chr11:65857665-65857857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               31, 135
               

               Conread position:
               1-197
               

               Cow position:
               chr11:81174697-81174890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               18, 56
               

               Conread position:
               1-217
               

               Cow position:
               chr11:17112819-17112606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               1-230
               

               Cow position:
               chr11:27386532-27386302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               59, 34
               

               Conread position:
               1-232
               

               Cow position:
               chr11:48042231-48041994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               34, 151
               

               Conread position:
               1-234
               

               Cow position:
               chr11:22932163-22931930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               135, 82
               

               Conread position:
               1-242
               

               Cow position:
               chr11:42003149-42002899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               11, 146
               

               Conread position:
               1-256
               

               Cow position:
               chr11:38874595-38874339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               1-257
               

               Cow position:
               chr11:7497836-7497583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               34, 22
               

               Conread position:
               1-258
               

               Cow position:
               chr11:30120854-30120597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               82, 55
               

               Conread position:
               1-258
               

               Cow position:
               chr11:32377995-32378252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               1-277
               

               Cow position:
               chr11:44642478-44642208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               31, 57
               

               Conread position:
               1-282
               

               Cow position:
               chr11:34829971-34829698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               34, 52
               

               Conread position:
               1-291
               

               Cow position:
               chr11:29947119-29946817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               83, 38
               

               Conread position:
               1-293
               

               Cow position:
               chr11:23138253-23137955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               34, 128
               

               Conread position:
               1-293
               

               Cow position:
               chr11:63482618-63482332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               216
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               35, 67
               

               Conread position:
               1-294
               

               Cow position:
               chr11:42358932-42359219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               253, 26
               

               Conread position:
               1-307
               

               Cow position:
               chr11:30924960-30925267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               233
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               33, 15
               

               Conread position:
               1-310
               

               Cow position:
               chr11:62155433-62155752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 282
               

               Conread position:
               1-313
               

               Cow position:
               chr11:2092148-2092446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               1-313
               

               Cow position:
               chr11:54334143-54334447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               55, 72
               

               Conread position:
               1-313
               

               Cow position:
               chr11:70609595-70609917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               32, 22
               

               Conread position:
               1-313
               

               Cow position:
               chr11:71168770-71168476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               13, 8
               

               Conread position:
               1-334
               

               Cow position:
               chr11:32436141-32436476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               34, 6
               

               Conread position:
               1-341
               

               Cow position:
               chr11:23385437-23385093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               36, 64
               

               Conread position:
               1-344
               

               Cow position:
               chr11:68207030-68206698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               33, 57
               

               Conread position:
               1-359
               

               Cow position:
               chr11:11557976-11558335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               34, 57
               

               Conread position:
               1-362
               

               Cow position:
               chr11:81406350-81406001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               1-363
               

               Cow position:
               chr11:73354246-73353900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               34, 64
               

               Conread position:
               1-367
               

               Cow position:
               chr11:36981375-36981736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               249
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               1-369
               

               Cow position:
               chr11:70459382-70459730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               1-369
               

               Cow position:
               chr11:75177696-75178071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               41, 145
               

               Conread position:
               1-369
               

               Cow position:
               chr11:77750960-77750588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               13, 8
               

               Conread position:
               1-370
               

               Cow position:
               chr11:19487668-19487305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               1-375
               

               Cow position:
               chr11:45872511-45872130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 178
               

               Conread position:
               1-375
               

               Cow position:
               chr11:81913911-81913543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               38, 139
               

               Conread position:
               1-378
               

               Cow position:
               chr11:4207121-4207493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               34, 49
               

               Conread position:
               1-379
               

               Cow position:
               chr11:5416707-5417069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               21, 87
               

               Conread position:
               1-379
               

               Cow position:
               chr11:20761652-20762035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 60
               

               Conread position:
               1-379
               

               Cow position:
               chr11:37804746-37804369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 58
               

               Conread position:
               1-379
               

               Cow position:
               chr11:43524428-43524793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               21, 85
               

               Conread position:
               1-379
               

               Cow position:
               chr11:48932776-48932406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               33, 57
               

               Conread position:
               1-379
               

               Cow position:
               chr11:49152760-49153123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 66
               

               Conread position:
               1-379
               

               Cow position:
               chr11:65762789-65762402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               1-379
               

               Cow position:
               chr11:73797367-73796985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               36, 149
               

               Conread position:
               1-379
               

               Cow position:
               chr11:80788103-80787704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               34, 19
               

               Conread position:
               1-383
               

               Cow position:
               chr11:19247387-19247018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 117
               

               Conread position:
               1-383
               

               Cow position:
               chr11:26535587-26535971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               31, 58
               

               Conread position:
               1-383
               

               Cow position:
               chr11:68912950-68913330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               1-386
               

               Cow position:
               chr11:40792886-40792504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               203, 36
               

               Conread position:
               1-386
               

               Cow position:
               chr11:66188513-66188131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 58
               

               Conread position:
               1-387
               

               Cow position:
               chr11:81138033-81138403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 57
               

               Conread position:
               1-388
               

               Cow position:
               chr11:30720905-30721294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               38, 101
               

               Conread position:
               1-389
               

               Cow position:
               chr11:1486059-1485667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               33, 196
               

               Conread position:
               1-390
               

               Cow position:
               chr11:3920497-3920107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               39, 141
               

               Conread position:
               1-394
               

               Cow position:
               chr11:42884963-42884583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               270
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               75, 15
               

               Conread position:
               1-395
               

               Cow position:
               chr11:77546226-77546594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               34, 64
               

               Conread position:
               1-396
               

               Cow position:
               chr11:46746442-46746837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               274
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               102, 34
               

               Conread position:
               1-397
               

               Cow position:
               chr11:45646786-45646387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               273
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               1-399
               

               Cow position:
               chr11:3726093-3726493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               266
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               21, 147
               

               Conread position:
               1-400
               

               Cow position:
               chr11:40818831-40818430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 142
               

               Conread position:
               1-401
               

               Cow position:
               chr11:171889-171511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               263
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               39, 84
               

               Conread position:
               1-401
               

               Cow position:
               chr11:21549303-21549688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               258
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               59, 19
               

               Conread position:
               1-401
               

               Cow position:
               chr11:25620588-25620184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               1-401
               

               Cow position:
               chr11:34616076-34616465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               34, 113
               

               Conread position:
               1-404
               

               Cow position:
               chr11:47351157-47351541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               41, 15
               

               Conread position:
               1-405
               

               Cow position:
               chr11:2788187-2788607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 292
               

               Conread position:
               1-406
               

               Cow position:
               chr11:85723509-85723899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 26
               

               Conread position:
               1-408
               

               Cow position:
               chr11:4663231-4662852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               269
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               83, 19
               

               Conread position:
               1-409
               

               Cow position:
               chr11:5961120-5961520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 67
               

               Conread position:
               1-409
               

               Cow position:
               chr11:48649785-48650200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               290
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               27, 10
               

               Conread position:
               1-410
               

               Cow position:
               chr11:27913082-27913497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 100
               

               Conread position:
               1-412
               

               Cow position:
               chr11:11125471-11125876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 146
               

               Conread position:
               1-415
               

               Cow position:
               chr11:29916345-29916767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               280
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               32, 15
               

               Conread position:
               1-420
               

               Cow position:
               chr11:4436140-4436558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               299
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               87, 26
               

               Conread position:
               1-424
               

               Cow position:
               chr11:5433075-5433498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 74
               

               Conread position:
               1-424
               

               Cow position:
               chr11:17860346-17859924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 67
               

               Conread position:
               1-425
               

               Cow position:
               chr11:43430642-43430227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               34, 63
               

               Conread position:
               1-426
               

               Cow position:
               chr11:51293602-51293173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               290
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               1-426
               

               Cow position:
               chr11:58990318-58990742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               278
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               1-427
               

               Cow position:
               chr11:33341339-33340903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               11, 58
               

               Conread position:
               1-428
               

               Cow position:
               chr11:48544250-48544673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               296
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               78, 29
               

               Conread position:
               1-428
               

               Cow position:
               chr11:81848668-81849120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               26, 12
               

               Conread position:
               1-430
               

               Cow position:
               chr11:27248299-27248722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 52
               

               Conread position:
               2-186
               

               Cow position:
               chr11:10076577-10076761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               31, 55
               

               Conread position:
               2-219
               

               Cow position:
               chr11:83196307-83196523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               26, 57
               

               Conread position:
               2-274
               

               Cow position:
               chr11:55014198-55013932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               35, 28
               

               Conread position:
               2-292
               

               Cow position:
               chr11:26483523-26483803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               33, 54
               

               Conread position:
               2-298
               

               Cow position:
               chr11:36799490-36799204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               82, 54
               

               Conread position:
               2-383
               

               Cow position:
               chr11:51687917-51687549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               17, 135
               

               Conread position:
               2-391
               

               Cow position:
               chr11:15016854-15017253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               265
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               85, 48
               

               Conread position:
               2-394
               

               Cow position:
               chr11:75480218-75479824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 65
               

               Conread position:
               2-396
               

               Cow position:
               chr11:78381242-78380868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 54
               

               Conread position:
               2-401
               

               Cow position:
               chr11:17889918-17889525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 121
               

               Conread position:
               2-409
               

               Cow position:
               chr11:30708311-30708717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 28
               

               Conread position:
               2-413
               

               Cow position:
               chr11:40458929-40459324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               278
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               389, 35
               

               Conread position:
               2-417
               

               Cow position:
               chr11:34962870-34963290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               278
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               33, 225
               

               Conread position:
               2-427
               

               Cow position:
               chr11:36182497-36182919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 55
               

               Conread position:
               2-431
               

               Cow position:
               chr11:33348376-33347965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 134
               

               Conread position:
               3-173
               

               Cow position:
               chr11:75748244-75748414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               3-282
               

               Cow position:
               chr11:3833543-3833276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               15, 53
               

               Conread position:
               3-297
               

               Cow position:
               chr11:77118522-77118802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               79, 130
               

               Conread position:
               3-310
               

               Cow position:
               chr11:41812099-41811799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               32, 76
               

               Conread position:
               3-375
               

               Cow position:
               chr11:14470180-14470540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               251
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               31, 52
               

               Conread position:
               3-378
               

               Cow position:
               chr11:30191983-30192360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 55
               

               Conread position:
               3-388
               

               Cow position:
               chr11:10095157-10095535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               3-395
               

               Cow position:
               chr11:44031813-44032208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 101
               

               Conread position:
               3-398
               

               Cow position:
               chr11:67345829-67345457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               280
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               81, 32
               

               Conread position:
               3-399
               

               Cow position:
               chr11:81300799-81300419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               274
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               3-402
               

               Cow position:
               chr11:62620194-62620581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 55
               

               Conread position:
               3-403
               

               Cow position:
               chr11:27932079-27932512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               33, 107
               

               Conread position:
               3-422
               

               Cow position:
               chr11:70382882-70382464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 91
               

               Conread position:
               4-131
               

               Cow position:
               chr11:25165254-25165383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-131
               

               Cow position:
               chr11:84890938-84890809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               31, 47
               

               Conread position:
               4-134
               

               Cow position:
               chr11:74929594-74929727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               4-146
               

               Cow position:
               chr11:32609814-32609960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               30, 55
               

               Conread position:
               4-164
               

               Cow position:
               chr11:63520587-63520745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               75, 47
               

               Conread position:
               4-170
               

               Cow position:
               chr11:71846534-71846369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               31, 47
               

               Conread position:
               4-181
               

               Cow position:
               chr11:77241188-77241358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               80, 31
               

               Conread position:
               4-182
               

               Cow position:
               chr11:17553532-17553356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               35, 59
               

               Conread position:
               4-182
               

               Cow position:
               chr11:47165323-47165152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               80, 31
               

               Conread position:
               4-183
               

               Cow position:
               chr11:18591620-18591444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               25, 54
               

               Conread position:
               4-185
               

               Cow position:
               chr11:6154226-6154401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               31, 61
               

               Conread position:
               4-185
               

               Cow position:
               chr11:37347288-37347470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 55
               

               Conread position:
               4-185
               

               Cow position:
               chr11:71455602-71455784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               30, 130
               

               Conread position:
               4-186
               

               Cow position:
               chr11:12555606-12555411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               4-186
               

               Cow position:
               chr11:81614827-81614647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               30, 112
               

               Conread position:
               4-190
               

               Cow position:
               chr11:47586534-47586353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               80, 52
               

               Conread position:
               4-190
               

               Cow position:
               chr11:63516638-63516824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-196
               

               Cow position:
               chr11:41239460-41239266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               31, 55
               

               Conread position:
               4-198
               

               Cow position:
               chr11:57171015-57170825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               80, 51
               

               Conread position:
               4-202
               

               Cow position:
               chr11:62979292-62979499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               27, 145
               

               Conread position:
               4-203
               

               Cow position:
               chr11:16251434-16251234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               30, 25
               

               Conread position:
               4-205
               

               Cow position:
               chr11:2309685-2309884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               30, 53
               

               Conread position:
               4-232
               

               Cow position:
               chr11:14094609-14094381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 47
               

               Conread position:
               4-244
               

               Cow position:
               chr11:81281759-81282008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               45, 40
               

               Conread position:
               4-249
               

               Cow position:
               chr11:875781-875541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               4-256
               

               Cow position:
               chr11:61859085-61858841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               31, 78
               

               Conread position:
               4-258
               

               Cow position:
               chr11:77766787-77766530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               31, 22
               

               Conread position:
               4-259
               

               Cow position:
               chr11:18588766-18588520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               35, 79
               

               Conread position:
               4-259
               

               Cow position:
               chr11:32749922-32750176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 147
               

               Conread position:
               4-261
               

               Cow position:
               chr11:70273115-70273374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               49, 145
               

               Conread position:
               4-266
               

               Cow position:
               chr11:49231688-49231946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               4-277
               

               Cow position:
               chr11:11232643-11232372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-285
               

               Cow position:
               chr11:35874180-35873912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               31, 47
               

               Conread position:
               4-286
               

               Cow position:
               chr11:36986776-36987041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               31, 82
               

               Conread position:
               4-288
               

               Cow position:
               chr11:71501317-71501039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               59, 25
               

               Conread position:
               4-290
               

               Cow position:
               chr11:50778185-50778463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               31, 47
               

               Conread position:
               4-292
               

               Cow position:
               chr11:18572618-18572898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               72, 25
               

               Conread position:
               4-292
               

               Cow position:
               chr11:23128725-23128442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               205
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               80, 26
               

               Conread position:
               4-293
               

               Cow position:
               chr11:58588159-58588443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-293
               

               Cow position:
               chr11:80761569-80761279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               32, 145
               

               Conread position:
               4-294
               

               Cow position:
               chr11:1362666-1362368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               31, 258
               

               Conread position:
               4-295
               

               Cow position:
               chr11:47544942-47545237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               32, 54
               

               Conread position:
               4-304
               

               Cow position:
               chr11:23232699-23232410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               80, 25
               

               Conread position:
               4-306
               

               Cow position:
               chr11:65409343-65409047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               27, 62
               

               Conread position:
               4-307
               

               Cow position:
               chr11:59872745-59873040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               29, 52
               

               Conread position:
               4-307
               

               Cow position:
               chr11:62151067-62150783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               78, 9
               

               Conread position:
               4-308
               

               Cow position:
               chr11:7590005-7590302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-310
               

               Cow position:
               chr11:377834-377525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 156
               

               Conread position:
               4-310
               

               Cow position:
               chr11:44234165-44234471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               31, 52
               

               Conread position:
               4-313
               

               Cow position:
               chr11:28643893-28644206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               32, 23
               

               Conread position:
               4-313
               

               Cow position:
               chr11:35684683-35684383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-313
               

               Cow position:
               chr11:36238595-36238897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               4-313
               

               Cow position:
               chr11:48272009-48272319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-324
               

               Cow position:
               chr11:27764967-27765283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               25, 42
               

               Conread position:
               4-327
               

               Cow position:
               chr11:6835343-6835666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 81
               

               Conread position:
               4-327
               

               Cow position:
               chr11:23586449-23586772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 47
               

               Conread position:
               4-331
               

               Cow position:
               chr11:43897952-43898274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               4-339
               

               Cow position:
               chr11:18244127-18243802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               241
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               35, 61
               

               Conread position:
               4-347
               

               Cow position:
               chr11:3393397-3393063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               31, 41
               

               Conread position:
               4-347
               

               Cow position:
               chr11:33414048-33414388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 129
               

               Conread position:
               4-351
               

               Cow position:
               chr11:87155329-87155676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 116
               

               Conread position:
               4-358
               

               Cow position:
               chr11:63202425-63202085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               218, 43
               

               Conread position:
               4-359
               

               Cow position:
               chr11:10687073-10686723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               4-360
               

               Cow position:
               chr11:9463643-9464001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               28, 132
               

               Conread position:
               4-362
               

               Cow position:
               chr11:4674636-4674278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               256
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               27, 61
               

               Conread position:
               4-362
               

               Cow position:
               chr11:24601785-24602123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               4-363
               

               Cow position:
               chr11:34145102-34144752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 54
               

               Conread position:
               4-367
               

               Cow position:
               chr11:8525299-8524947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               4-368
               

               Cow position:
               chr11:44636946-44636583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               31, 52
               

               Conread position:
               4-368
               

               Cow position:
               chr11:68910037-68909681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 53
               

               Conread position:
               4-371
               

               Cow position:
               chr11:3702762-3703126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               238
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               35, 79
               

               Conread position:
               4-371
               

               Cow position:
               chr11:13043332-13042973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 80
               

               Conread position:
               4-373
               

               Cow position:
               chr11:21844321-21843962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 47
               

               Conread position:
               4-375
               

               Cow position:
               chr11:32198754-32199124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               84, 19
               

               Conread position:
               4-375
               

               Cow position:
               chr11:55761692-55762035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               4-377
               

               Cow position:
               chr11:68841016-68841390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               54, 27
               

               Conread position:
               4-377
               

               Cow position:
               chr11:83066309-83066673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 51
               

               Conread position:
               4-379
               

               Cow position:
               chr11:4732153-4732527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               40, 132
               

               Conread position:
               4-379
               

               Cow position:
               chr11:19500967-19500621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               31, 9
               

               Conread position:
               4-379
               

               Cow position:
               chr11:20238488-20238859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 35
               

               Conread position:
               4-379
               

               Cow position:
               chr11:35154013-35153637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-379
               

               Cow position:
               chr11:36286513-36286887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               80, 27
               

               Conread position:
               4-379
               

               Cow position:
               chr11:39115308-39115656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               258
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               84, 52
               

               Conread position:
               4-379
               

               Cow position:
               chr11:47639216-47638841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               254
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               35, 59
               

               Conread position:
               4-379
               

               Cow position:
               chr11:50153004-50152630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 52
               

               Conread position:
               4-379
               

               Cow position:
               chr11:74316525-74316889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               36, 25
               

               Conread position:
               4-382
               

               Cow position:
               chr11:23251789-23251413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               31, 138
               

               Conread position:
               4-382
               

               Cow position:
               chr11:35347943-35347565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 61
               

               Conread position:
               4-384
               

               Cow position:
               chr11:41215558-41215921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 31
               

               Conread position:
               4-384
               

               Cow position:
               chr11:53773487-53773871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 149
               

               Conread position:
               4-385
               

               Cow position:
               chr11:57725014-57724634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 145
               

               Conread position:
               4-387
               

               Cow position:
               chr11:20684765-20684379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               31, 147
               

               Conread position:
               4-387
               

               Cow position:
               chr11:67931682-67931300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               31, 179
               

               Conread position:
               4-388
               

               Cow position:
               chr11:6400258-6399872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 60
               

               Conread position:
               4-388
               

               Cow position:
               chr11:17227834-17227458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               273
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               4-388
               

               Cow position:
               chr11:30764294-30764684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               259
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               25, 131
               

               Conread position:
               4-389
               

               Cow position:
               chr11:2874200-2874595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               270
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               33, 143
               

               Conread position:
               4-389
               

               Cow position:
               chr11:15632745-15632367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-389
               

               Cow position:
               chr11:31525678-31526073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               259
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               31, 286
               

               Conread position:
               4-389
               

               Cow position:
               chr11:33349887-33349509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               31, 132
               

               Conread position:
               4-390
               

               Cow position:
               chr11:40995-41364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-390
               

               Cow position:
               chr11:27746735-27747112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 51
               

               Conread position:
               4-390
               

               Cow position:
               chr11:28367516-28367905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               37, 134
               

               Conread position:
               4-390
               

               Cow position:
               chr11:32421672-32421291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               246
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               35, 105
               

               Conread position:
               4-390
               

               Cow position:
               chr11:48383341-48383724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 141
               

               Conread position:
               4-390
               

               Cow position:
               chr11:70601009-70600633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 194
               

               Conread position:
               4-390
               

               Cow position:
               chr11:71493046-71492670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               266
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               29, 137
               

               Conread position:
               4-394
               

               Cow position:
               chr11:6580628-6581032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               32, 64
               

               Conread position:
               4-394
               

               Cow position:
               chr11:45631950-45631583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               269
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               4-395
               

               Cow position:
               chr11:61202977-61203371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               265
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               4-395
               

               Cow position:
               chr11:63065468-63065854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               267
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               31, 122
               

               Conread position:
               4-395
               

               Cow position:
               chr11:70484047-70483652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-396
               

               Cow position:
               chr11:35723791-35724165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               266
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               33, 61
               

               Conread position:
               4-398
               

               Cow position:
               chr11:21894339-21893946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               276
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               79, 113
               

               Conread position:
               4-399
               

               Cow position:
               chr11:5418451-5418053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               274
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               38, 93
               

               Conread position:
               4-399
               

               Cow position:
               chr11:19592183-19591793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 135
               

               Conread position:
               4-399
               

               Cow position:
               chr11:42016824-42016431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 148
               

               Conread position:
               4-399
               

               Cow position:
               chr11:56728761-56729137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               31, 74
               

               Conread position:
               4-399
               

               Cow position:
               chr11:62490248-62490622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               82, 47
               

               Conread position:
               4-400
               

               Cow position:
               chr11:8495851-8496236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               266
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               31, 143
               

               Conread position:
               4-400
               

               Cow position:
               chr11:34121012-34121404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-400
               

               Cow position:
               chr11:42836146-42835747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               274
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               80, 96
               

               Conread position:
               4-400
               

               Cow position:
               chr11:55052697-55053067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               29, 55
               

               Conread position:
               4-400
               

               Cow position:
               chr11:65058800-65058409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               37, 133
               

               Conread position:
               4-401
               

               Cow position:
               chr11:34646403-34646800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               4-401
               

               Cow position:
               chr11:40467309-40466918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 132
               

               Conread position:
               4-401
               

               Cow position:
               chr11:55333723-55334120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 40
               

               Conread position:
               4-401
               

               Cow position:
               chr11:59902702-59903095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 136
               

               Conread position:
               4-401
               

               Cow position:
               chr11:76369704-76369323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               267
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               84, 12
               

               Conread position:
               4-402
               

               Cow position:
               chr11:17278854-17278476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               31, 100
               

               Conread position:
               4-402
               

               Cow position:
               chr11:72375874-72375460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               278
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               27, 54
               

               Conread position:
               4-403
               

               Cow position:
               chr11:36940787-36940387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               267
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               29, 140
               

               Conread position:
               4-404
               

               Cow position:
               chr11:46329312-46329708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               279
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               38, 69
               

               Conread position:
               4-405
               

               Cow position:
               chr11:27405254-27404862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 52
               

               Conread position:
               4-406
               

               Cow position:
               chr11:19593633-19594025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               275
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               31, 81
               

               Conread position:
               4-406
               

               Cow position:
               chr11:30165321-30165722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 141
               

               Conread position:
               4-407
               

               Cow position:
               chr11:2907707-2907321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               282
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-407
               

               Cow position:
               chr11:5328609-5328999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               269
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               84, 39
               

               Conread position:
               4-407
               

               Cow position:
               chr11:13191034-13191450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               273
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               31, 139
               

               Conread position:
               4-410
               

               Cow position:
               chr11:25791877-25791480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 25
               

               Conread position:
               4-411
               

               Cow position:
               chr11:5075408-5075014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               57, 104
               

               Conread position:
               4-412
               

               Cow position:
               chr11:14649502-14649093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               273
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               35, 134
               

               Conread position:
               4-414
               

               Cow position:
               chr11:23272190-23271787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               278
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               26, 57
               

               Conread position:
               4-415
               

               Cow position:
               chr11:15503915-15504326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               278
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               35, 178
               

               Conread position:
               4-415
               

               Cow position:
               chr11:65607879-65607477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               286
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               31, 54
               

               Conread position:
               4-416
               

               Cow position:
               chr11:63434244-63433851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               4-417
               

               Cow position:
               chr11:46748052-46747637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 50
               

               Conread position:
               4-418
               

               Cow position:
               chr11:61454720-61454278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 117
               

               Conread position:
               4-418
               

               Cow position:
               chr11:69119114-69119514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               4-428
               

               Cow position:
               chr11:9221911-9221488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               284
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               40, 10
               

               Conread position:
               4-429
               

               Cow position:
               chr11:24438413-24437984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 98
               

               Conread position:
               4-431
               

               Cow position:
               chr11:13592548-13592975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 55
               

               Conread position:
               4-431
               

               Cow position:
               chr11:17495932-17495515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               279
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               31, 101
               

               Conread position:
               4-431
               

               Cow position:
               chr11:32595281-32595694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               279
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               31, 77
               

               Conread position:
               4-431
               

               Cow position:
               chr11:83397711-83398142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 143
               

               Conread position:
               5-173
               

               Cow position:
               chr11:36301265-36301098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 144
               

               Conread position:
               5-198
               

               Cow position:
               chr11:36672235-36672039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               30, 145
               

               Conread position:
               5-234
               

               Cow position:
               chr11:42793160-42792932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               30, 53
               

               Conread position:
               5-261
               

               Cow position:
               chr11:18341223-18340973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               5-276
               

               Cow position:
               chr11:5226926-5226649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               31, 63
               

               Conread position:
               5-281
               

               Cow position:
               chr11:45898240-45897961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               30, 53
               

               Conread position:
               5-288
               

               Cow position:
               chr11:5031962-5031682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               30, 54
               

               Conread position:
               5-311
               

               Cow position:
               chr11:77128475-77128775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               129, 50
               

               Conread position:
               5-313
               

               Cow position:
               chr11:1071276-1070974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               206
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               22, 26
               

               Conread position:
               5-313
               

               Cow position:
               chr11:63847665-63847963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               78, 50
               

               Conread position:
               5-379
               

               Cow position:
               chr11:45277341-45276965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               30, 137
               

               Conread position:
               5-383
               

               Cow position:
               chr11:6594433-6594042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               83, 8
               

               Conread position:
               5-387
               

               Cow position:
               chr11:3720067-3720446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               25, 80
               

               Conread position:
               5-387
               

               Cow position:
               chr11:7458474-7458089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               253
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               28, 140
               

               Conread position:
               5-390
               

               Cow position:
               chr11:29960119-29960486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               267
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               29, 24
               

               Conread position:
               5-399
               

               Cow position:
               chr11:64077687-64077297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               83, 29
               

               Conread position:
               5-401
               

               Cow position:
               chr11:36194106-36194498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 119
               

               Conread position:
               5-406
               

               Cow position:
               chr11:15772907-15772505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 150
               

               Conread position:
               5-421
               

               Cow position:
               chr11:44818912-44819310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               275
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               30, 131
               

               Conread position:
               5-431
               

               Cow position:
               chr11:13499825-13500251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 128
               

               Conread position:
               5-431
               

               Cow position:
               chr11:38334330-38334757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 112
               

               Conread position:
               6-268
               

               Cow position:
               chr11:18372892-18373150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               6-284
               

               Cow position:
               chr11:49934927-49934641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               29, 150
               

               Conread position:
               6-288
               

               Cow position:
               chr11:42044174-42043903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               6-294
               

               Cow position:
               chr11:33310783-33311077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               29, 120
               

               Conread position:
               6-303
               

               Cow position:
               chr11:79960975-79960678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               38, 260
               

               Conread position:
               6-359
               

               Cow position:
               chr11:81162616-81162284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               6-371
               

               Cow position:
               chr11:77705573-77705925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               78, 27
               

               Conread position:
               6-373
               

               Cow position:
               chr11:30639132-30638775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               260
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               30, 125
               

               Conread position:
               6-379
               

               Cow position:
               chr11:2917772-2917410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               25, 52
               

               Conread position:
               6-379
               

               Cow position:
               chr11:47899093-47899433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               29, 52
               

               Conread position:
               6-389
               

               Cow position:
               chr11:52297407-52297028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 45
               

               Conread position:
               6-400
               

               Cow position:
               chr11:7924773-7924392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               275
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               6-409
               

               Cow position:
               chr11:31413267-31413668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               31, 15
               

               Conread position:
               7-311
               

               Cow position:
               chr11:30954813-30955117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               28, 51
               

               Conread position:
               7-429
               

               Cow position:
               chr11:18509205-18508805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 50
               

               Conread position:
               9-135
               

               Cow position:
               chr11:53719764-53719888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               75, 29
               

               Conread position:
               9-276
               

               Cow position:
               chr11:64638712-64638443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               43, 26
               

               Conread position:
               9-301
               

               Cow position:
               chr11:56654368-56654662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               16, 24
               

               Conread position:
               9-307
               

               Cow position:
               chr11:83230569-83230288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               9-313
               

               Cow position:
               chr11:61958930-61958624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               221
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               26, 116
               

               Conread position:
               9-345
               

               Cow position:
               chr11:1157461-1157798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               26, 50
               

               Conread position:
               9-366
               

               Cow position:
               chr11:34113086-34113431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               9-379
               

               Cow position:
               chr11:17831402-17831023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               267
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               23, 70
               

               Conread position:
               9-379
               

               Cow position:
               chr11:65157595-65157222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               256
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               26, 49
               

               Conread position:
               9-382
               

               Cow position:
               chr11:79728853-79728486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 47
               

               Conread position:
               9-387
               

               Cow position:
               chr11:38236063-38236436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 20
               

               Conread position:
               9-416
               

               Cow position:
               chr11:80923507-80923109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 49
               

               Conread position:
               10-310
               

               Cow position:
               chr11:40573516-40573220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               29, 140
               

               Conread position:
               10-401
               

               Cow position:
               chr11:66041095-66041477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               77, 18
               

               Conread position:
               11-308
               

               Cow position:
               chr11:47004169-47004457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               24, 43
               

               Conread position:
               11-401
               

               Cow position:
               chr11:48672537-48672918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               261
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               77, 43
               

               Conread position:
               13-133
               

               Cow position:
               chr11:78819922-78820040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               20, 44
               

               Conread position:
               13-141
               

               Cow position:
               chr11:40860890-40860758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               13-141
               

               Cow position:
               chr11:57111489-57111355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               13-171
               

               Cow position:
               chr11:61299157-61299002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               65, 16
               

               Conread position:
               13-173
               

               Cow position:
               chr11:9837281-9837118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               19, 137
               

               Conread position:
               13-173
               

               Cow position:
               chr11:43914037-43914195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               71, 22
               

               Conread position:
               13-236
               

               Cow position:
               chr11:2811908-2811687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               22, 45
               

               Conread position:
               13-288
               

               Cow position:
               chr11:73512608-73512350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               13-300
               

               Cow position:
               chr11:71341631-71341359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               20, 34
               

               Conread position:
               13-305
               

               Cow position:
               chr11:38577948-38577668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               70, 21
               

               Conread position:
               13-305
               

               Cow position:
               chr11:67747105-67747394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               22, 45
               

               Conread position:
               13-312
               

               Cow position:
               chr11:83687607-83687316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 71
               

               Conread position:
               13-313
               

               Cow position:
               chr11:34032382-34032080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               216
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               21, 46
               

               Conread position:
               13-334
               

               Cow position:
               chr11:82940801-82940488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               231
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               20, 46
               

               Conread position:
               13-345
               

               Cow position:
               chr11:71868788-71868454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 138
               

               Conread position:
               13-361
               

               Cow position:
               chr11:3780601-3780250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               233
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               22, 72
               

               Conread position:
               13-366
               

               Cow position:
               chr11:38670503-38670859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 43
               

               Conread position:
               13-368
               

               Cow position:
               chr11:48474523-48474881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               251
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               22, 43
               

               Conread position:
               13-379
               

               Cow position:
               chr11:45282748-45283110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               253
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               22, 100
               

               Conread position:
               13-386
               

               Cow position:
               chr11:9270907-9270548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               261
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               22, 143
               

               Conread position:
               13-399
               

               Cow position:
               chr11:66896979-66896597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               22, 131
               

               Conread position:
               13-405
               

               Cow position:
               chr11:36058625-36059005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               270
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               22, 63
               

               Conread position:
               13-411
               

               Cow position:
               chr11:5485830-5486231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               269
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               29, 142
               

               Conread position:
               13-417
               

               Cow position:
               chr11:26144278-26143879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 111
               

               Conread position:
               13-420
               

               Cow position:
               chr11:77745435-77745022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               13-428
               

               Cow position:
               chr11:36848747-36849150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               281
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               22, 43
               

               Conread position:
               13-431
               

               Cow position:
               chr11:52381051-52380636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 36
               

               Conread position:
               15-282
               

               Cow position:
               chr11:56734454-56734717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               69, 34
               

               Conread position:
               15-394
               

               Cow position:
               chr11:62964311-62964692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               22, 14
               

               Conread position:
               16-182
               

               Cow position:
               chr11:81605451-81605618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               17, 127
               

               Conread position:
               16-186
               

               Cow position:
               chr11:65843265-65843101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               45, 19
               

               Conread position:
               16-203
               

               Cow position:
               chr11:33468536-33468720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               19, 10
               

               Conread position:
               16-279
               

               Cow position:
               chr11:60143475-60143217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               19, 48
               

               Conread position:
               16-302
               

               Cow position:
               chr11:20602056-20602334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               200
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               67, 19
               

               Conread position:
               16-310
               

               Cow position:
               chr11:80530189-80530476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               17, 128
               

               Conread position:
               16-379
               

               Cow position:
               chr11:18698701-18699053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               17, 42
               

               Conread position:
               16-379
               

               Cow position:
               chr11:53778439-53778803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 42
               

               Conread position:
               16-389
               

               Cow position:
               chr11:67615107-67614732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 271
               

               Conread position:
               16-393
               

               Cow position:
               chr11:83043540-83043170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               18, 43
               

               Conread position:
               16-399
               

               Cow position:
               chr11:7873971-7874344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 49
               

               Conread position:
               16-401
               

               Cow position:
               chr11:55744300-55744673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 68
               

               Conread position:
               16-419
               

               Cow position:
               chr11:1625394-1624997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               273
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               19, 42
               

               Conread position:
               16-431
               

               Cow position:
               chr11:81143727-81143308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               274
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               18, 43
               

               Conread position:
               17-133
               

               Cow position:
               chr11:29786776-29786662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               67, 18
               

               Conread position:
               17-134
               

               Cow position:
               chr11:18399507-18399383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               17-293
               

               Cow position:
               chr11:8148072-8147800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               17-307
               

               Cow position:
               chr11:70086149-70086445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 229
               

               Conread position:
               17-366
               

               Cow position:
               chr11:29659384-29659729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               61, 24
               

               Conread position:
               17-367
               

               Cow position:
               chr11:28993904-28993577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               70, 32
               

               Conread position:
               17-371
               

               Cow position:
               chr11:22978040-22977707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               19, 41
               

               Conread position:
               17-379
               

               Cow position:
               chr11:32055360-32055002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               22, 122
               

               Conread position:
               17-380
               

               Cow position:
               chr11:30830791-30830439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 41
               

               Conread position:
               17-385
               

               Cow position:
               chr11:41986219-41985859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 5
               

               Conread position:
               17-401
               

               Cow position:
               chr11:64104234-64103847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               25, 48
               

               Conread position:
               17-413
               

               Cow position:
               chr11:65826914-65826534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 46
               

               Conread position:
               18-198
               

               Cow position:
               chr11:15525779-15525972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               15, 93
               

               Conread position:
               18-315
               

               Cow position:
               chr11:36658992-36658705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               12, 41
               

               Conread position:
               18-379
               

               Cow position:
               chr11:46580185-46580531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               70, 11
               

               Conread position:
               18-420
               

               Cow position:
               chr11:1380507-1380901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 34
               

               Conread position:
               19-291
               

               Cow position:
               chr11:53511908-53512179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               14, 170
               

               Conread position:
               19-368
               

               Cow position:
               chr11:8545186-8544845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 40
               

               Conread position:
               19-379
               

               Cow position:
               chr11:67600609-67600961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 40
               

               Conread position:
               19-412
               

               Cow position:
               chr11:2083963-2084359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 130
               

               Conread position:
               19-418
               

               Cow position:
               chr11:52133008-52132596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               280
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               41, 13
               

               Conread position:
               20-261
               

               Cow position:
               chr11:41176122-41175881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               15, 38
               

               Conread position:
               20-282
               

               Cow position:
               chr11:63469707-63469963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               64, 19
               

               Conread position:
               20-367
               

               Cow position:
               chr11:77319240-77319583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               15, 38
               

               Conread position:
               21-370
               

               Cow position:
               chr11:30209992-30209649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 23
               

               Conread position:
               21-373
               

               Cow position:
               chr11:49148870-49149223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               41, 14
               

               Conread position:
               21-379
               

               Cow position:
               chr11:16907214-16906848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               14, 37
               

               Conread position:
               21-390
               

               Cow position:
               chr11:2327516-2327883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               21-407
               

               Cow position:
               chr11:33287121-33286742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               39, 63
               

               Conread position:
               22-155
               

               Cow position:
               chr11:29266370-29266506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               13, 34
               

               Conread position:
               22-387
               

               Cow position:
               chr11:55973084-55972740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               11, 61
               

               Conread position:
               24-189
               

               Cow position:
               chr11:86894510-86894678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               24-387
               

               Cow position:
               chr11:55494514-55494854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               252
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               64, 26
               

               Conread position:
               24-415
               

               Cow position:
               chr11:45742217-45742585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               27-373
               

               Cow position:
               chr11:46998823-46999163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               43, 10
               

               Conread position:
               27-387
               

               Cow position:
               chr11:40608759-40608404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 10
               

               Conread position:
               29-379
               

               Cow position:
               chr11:35693534-35693881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               55, 15
               

               Conread position:
               29-385
               

               Cow position:
               chr11:6202286-6202647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               55, 27
               

               Conread position:
               30-225
               

               Cow position:
               chr11:21428153-21427961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               54, 23
               

               Conread position:
               30-356
               

               Cow position:
               chr11:39499199-39499515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               30-396
               

               Cow position:
               chr11:7273391-7273040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               8, 110
               

               Conread position:
               31-383
               

               Cow position:
               chr11:22675955-22676299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               69, 12
               

               Conread position:
               32-182
               

               Cow position:
               chr11:63499481-63499335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               51, 105
               

               Conread position:
               32-306
               

               Cow position:
               chr11:40479012-40478741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               20, 118
               

               Conread position:
               32-373
               

               Cow position:
               chr11:51729131-51729451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 16
               

               Conread position:
               32-399
               

               Cow position:
               chr11:45619192-45619551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               258
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               26, 53
               

               Conread position:
               32-400
               

               Cow position:
               chr11:2576061-2575705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               56, 23
               

               Conread position:
               32-400
               

               Cow position:
               chr11:71390721-71390369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               52, 30
               

               Conread position:
               32-409
               

               Cow position:
               chr11:80756941-80756578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               256
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               52, 112
               

               Conread position:
               32-423
               

               Cow position:
               chr11:84385795-84385411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 24
               

               Conread position:
               32-424
               

               Cow position:
               chr11:76889891-76890270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 24
               

               Conread position:
               32-428
               

               Cow position:
               chr11:42919385-42918986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               30, 52
               

               Conread position:
               32-429
               

               Cow position:
               chr11:43360945-43360550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 166
               

               Conread position:
               33-242
               

               Cow position:
               chr11:30596830-30597042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               51, 31
               

               Conread position:
               33-378
               

               Cow position:
               chr11:259329-258991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               55, 16
               

               Conread position:
               33-395
               

               Cow position:
               chr11:48295876-48296227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 22
               

               Conread position:
               33-396
               

               Cow position:
               chr11:32126454-32126816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               34-361
               

               Cow position:
               chr11:31337225-31337544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 14
               

               Conread position:
               34-389
               

               Cow position:
               chr11:35213316-35212978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               101, 26
               

               Conread position:
               34-400
               

               Cow position:
               chr11:80556065-80556423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               48, 21
               

               Conread position:
               34-402
               

               Cow position:
               chr11:4323200-4323570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               50, 106
               

               Conread position:
               34-410
               

               Cow position:
               chr11:63435362-63435733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 21
               

               Conread position:
               35-307
               

               Cow position:
               chr11:70278263-70278000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               49, 21
               

               Conread position:
               37-388
               

               Cow position:
               chr11:18851766-18852090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               236
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               51, 18
               

               Conread position:
               37-408
               

               Cow position:
               chr11:32254371-32254004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               346, 108
               

               Conread position:
               38-231
               

               Cow position:
               chr11:56349167-56348985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               46, 24
               

               Conread position:
               38-275
               

               Cow position:
               chr11:52983525-52983757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               22, 45
               

               Conread position:
               38-361
               

               Cow position:
               chr11:69015823-69016142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               22, 46
               

               Conread position:
               38-379
               

               Cow position:
               chr11:70250774-70251097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               234
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               162, 9
               

               Conread position:
               38-383
               

               Cow position:
               chr11:84228865-84228536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               46, 59
               

               Conread position:
               38-409
               

               Cow position:
               chr11:6245170-6245532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 15
               

               Conread position:
               39-379
               

               Cow position:
               chr11:6234030-6233695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               39-395
               

               Cow position:
               chr11:41134216-41133879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               254
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               45, 14
               

               Conread position:
               40-189
               

               Cow position:
               chr11:51626813-51626960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               44, 106
               

               Conread position:
               40-373
               

               Cow position:
               chr11:21422085-21421761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               40-375
               

               Cow position:
               chr11:56675765-56676104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               23, 95
               

               Conread position:
               40-431
               

               Cow position:
               chr11:40794503-40794110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               20, 73
               

               Conread position:
               41-259
               

               Cow position:
               chr11:61560774-61560566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               19, 43
               

               Conread position:
               41-310
               

               Cow position:
               chr11:36635191-36634926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               21, 83
               

               Conread position:
               42-370
               

               Cow position:
               chr11:6633562-6633900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               99, 40
               

               Conread position:
               42-387
               

               Cow position:
               chr11:287480-287138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               215, 39
               

               Conread position:
               43-388
               

               Cow position:
               chr11:5201789-5201454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               23, 41
               

               Conread position:
               43-408
               

               Cow position:
               chr11:32777542-32777890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 80
               

               Conread position:
               45-387
               

               Cow position:
               chr11:18425384-18425048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               213, 36
               

               Conread position:
               46-401
               

               Cow position:
               chr11:70756334-70756676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               252
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               14, 78
               

               Conread position:
               46-408
               

               Cow position:
               chr11:7460761-7460411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               245
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               14, 95
               

               Conread position:
               47-303
               

               Cow position:
               chr11:71807715-71807458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               41, 97
               

               Conread position:
               47-389
               

               Cow position:
               chr11:50472173-50472511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               49-386
               

               Cow position:
               chr11:69977835-69978155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               49-390
               

               Cow position:
               chr11:48659789-48660124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               38, 86
               

               Conread position:
               50-362
               

               Cow position:
               chr11:47772533-47772216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               242, 212
               

               Conread position:
               50-393
               

               Cow position:
               chr11:53510640-53510299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               20, 34
               

               Conread position:
               52-189
               

               Cow position:
               chr11:10837668-10837530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               52-190
               

               Cow position:
               chr11:32300333-32300471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               32, 93
               

               Conread position:
               52-287
               

               Cow position:
               chr11:67246653-67246878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               32, 88
               

               Conread position:
               52-288
               

               Cow position:
               chr11:86720551-86720324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               52-315
               

               Cow position:
               chr11:69075769-69076031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               36, 96
               

               Conread position:
               52-372
               

               Cow position:
               chr11:81135304-81134993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               36, 46
               

               Conread position:
               52-373
               

               Cow position:
               chr11:68112402-68112082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               52-383
               

               Cow position:
               chr11:67615382-67615065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               52-410
               

               Cow position:
               chr11:68555226-68554878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               261, 27
               

               Conread position:
               52-429
               

               Cow position:
               chr11:23407322-23407697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               256
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               36, 97
               

               Conread position:
               53-345
               

               Cow position:
               chr11:19233092-19232801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               12, 95
               

               Conread position:
               54-244
               

               Cow position:
               chr11:21398826-21399013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               8, 31
               

               Conread position:
               55-379
               

               Cow position:
               chr11:70978863-70978552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               29, 52
               

               Conread position:
               56-260
               

               Cow position:
               chr11:80537351-80537554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               75, 93
               

               Conread position:
               56-363
               

               Cow position:
               chr11:85703571-85703856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               32, 81
               

               Conread position:
               56-384
               

               Cow position:
               chr11:27907658-27907958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               28, 84
               

               Conread position:
               56-388
               

               Cow position:
               chr11:49057267-49057575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               236
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               32, 90
               

               Conread position:
               56-388
               

               Cow position:
               chr11:62788993-62789321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 36
               

               Conread position:
               56-397
               

               Cow position:
               chr11:59024489-59024153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               241
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               28, 75
               

               Conread position:
               56-409
               

               Cow position:
               chr11:76652887-76653230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               347, 25
               

               Conread position:
               56-411
               

               Cow position:
               chr11:70206188-70206530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               242
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               56-412
               

               Cow position:
               chr11:66572636-66572279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               28, 144
               

               Conread position:
               56-417
               

               Cow position:
               chr11:52690657-52690303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 88
               

               Conread position:
               56-431
               

               Cow position:
               chr11:13864233-13863864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 39
               

               Conread position:
               57-308
               

               Cow position:
               chr11:39118618-39118869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               27, 216
               

               Conread position:
               57-363
               

               Cow position:
               chr11:53462809-53463109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               215
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               31, 89
               

               Conread position:
               57-373
               

               Cow position:
               chr11:35981278-35980964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               27, 58
               

               Conread position:
               57-425
               

               Cow position:
               chr11:40395304-40395663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 50
               

               Conread position:
               57-431
               

               Cow position:
               chr11:63999224-63998850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               254
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               31, 91
               

               Conread position:
               58-400
               

               Cow position:
               chr11:64009586-64009928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               58-402
               

               Cow position:
               chr11:61525935-61526282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               30, 76
               

               Conread position:
               58-415
               

               Cow position:
               chr11:62742766-62742428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               249
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               321, 63
               

               Conread position:
               59-363
               

               Cow position:
               chr11:47755516-47755213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               60-379
               

               Cow position:
               chr11:29308451-29308765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               91, 25
               

               Conread position:
               62-379
               

               Cow position:
               chr11:49873017-49872704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 83
               

               Conread position:
               62-398
               

               Cow position:
               chr11:32354115-32353783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               26, 76
               

               Conread position:
               64-366
               

               Cow position:
               chr11:11994832-11994542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               20, 11
               

               Conread position:
               64-375
               

               Cow position:
               chr11:8461888-8462185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               20, 81
               

               Conread position:
               64-395
               

               Cow position:
               chr11:261390-261060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               23, 73
               
UCSC Genome Browser
               Conread position:
               64-395
               

               Cow position:
               chr11:13067798-13067473 (view  custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               69, 199
               
UCSC Genome Browser
               
               
               
Conread position: 65-298

               
               
               
Cow position: chr11:33345317-33345549 (view  custom track)

               
               
               
Alignm length: 235

               
               
               
Alignm identity: 161

               
               
               
Alignm E-value: 3e-29

               
               
               
Alignm gaps (pig, cow): 19, 80
UCSC Genome Browser
               
               
               
Conread position: 65-384

               
               
               
Cow position: chr11:81168158-81167843 (view  custom track)

               
               
               
Alignm length: 323

               
               
               
Alignm identity: 231

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 19, 175

               
               
               Conread position:66-391
               
               
               Cow position:chr11:41293944-41293609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:66-399
               
               
               Cow position:chr11:13940066-13940390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:66-415
               
               
               Cow position:chr11:83032558-83032896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:66-417
               
               
               Cow position:chr11:63035301-63034955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:68-379
               
               
               Cow position:chr11:64104870-64105176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:68-403
               
               
               Cow position:chr11:21507883-21508221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):161, 17

               
               
               Conread position:69-431
               
               
               Cow position:chr11:3739831-3740199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:70-307
               
               
               Cow position:chr11:65852356-65852589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:70-382
               
               
               Cow position:chr11:47311106-47310798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 63

               
               
               Conread position:70-393
               
               
               Cow position:chr11:5217587-5217259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):111, 73

               
               
               Conread position:73-288
               
               
               Cow position:chr11:14466607-14466393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:73-314
               
               
               Cow position:chr11:18587725-18587476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 211

               
               
               Conread position:75-363
               
               
               Cow position:chr11:30728288-30728568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:77-379
               
               
               Cow position:chr11:83323461-83323760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):178, 10

               
               
               Conread position:79-312
               
               
               Cow position:chr11:83033348-83033122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:79-321
               
               
               Cow position:chr11:36315285-36315046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:79-379
               
               
               Cow position:chr11:48085804-48086101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 151

               
               
               Conread position:79-415
               
               
               Cow position:chr11:5602340-5602675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):120, 54

               
               
               Conread position:82-270
               
               
               Cow position:chr11:55203570-55203383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):5, 63

               
               
               Conread position:82-411
               
               
               Cow position:chr11:39060708-39060385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:84-373
               
               
               Cow position:chr11:17083417-17083136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 36

               
               
               Conread position:84-387
               
               
               Cow position:chr11:6642705-6643005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:85-261
               
               
               Cow position:chr11:69392452-69392630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:85-297
               
               
               Cow position:chr11:65767092-65767303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):201, 46

               
               
               Conread position:85-304
               
               
               Cow position:chr11:4653083-4652863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 70

               
               
               Conread position:85-310
               
               
               Cow position:chr11:26845700-26845479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:85-360
               
               
               Cow position:chr11:31874987-31875258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:85-369
               
               
               Cow position:chr11:30808707-30808424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 180

               
               
               Conread position:85-375
               
               
               Cow position:chr11:17036635-17036353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:85-379
               
               
               Cow position:chr11:375349-375642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:85-379
               
               
               Cow position:chr11:42066755-42067047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:85-390
               
               
               Cow position:chr11:8584215-8584510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 154

               
               
               Conread position:85-390
               
               
               Cow position:chr11:75285873-75285562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:85-391
               
               
               Cow position:chr11:30493893-30494183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:85-399
               
               
               Cow position:chr11:26275062-26274763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):286, 60

               
               
               Conread position:86-362
               
               
               Cow position:chr11:8684176-8683912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:86-379
               
               
               Cow position:chr11:37919148-37918865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):251, 15

               
               
               Conread position:87-379
               
               
               Cow position:chr11:32881047-32881328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 53

               
               
               Conread position:87-401
               
               
               Cow position:chr11:16314769-16315079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:88-312
               
               
               Cow position:chr11:35573591-35573374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:88-373
               
               
               Cow position:chr11:80413114-80412832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):120, 33

               
               
               Conread position:88-387
               
               
               Cow position:chr11:31024910-31024610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):227, 51

               
               
               Conread position:91-400
               
               
               Cow position:chr11:58594487-58594183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:92-375
               
               
               Cow position:chr11:81159781-81160061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:92-388
               
               
               Cow position:chr11:7385339-7385626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:92-390
               
               
               Cow position:chr11:42160159-42159871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:92-410
               
               
               Cow position:chr11:7330952-7331258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:93-362
               
               
               Cow position:chr11:24599487-24599232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 124

               
               
               Conread position:93-399
               
               
               Cow position:chr11:35665660-35665357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):260, 32

               
               
               Conread position:93-420
               
               
               Cow position:chr11:30370010-30370320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:94-379
               
               
               Cow position:chr11:17676467-17676192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:94-428
               
               
               Cow position:chr11:56288451-56288777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:95-379
               
               
               Cow position:chr11:62813045-62812769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:95-399
               
               
               Cow position:chr11:8669912-8670221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:96-373
               
               
               Cow position:chr11:80564198-80564474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):203, 43

               
               
               Conread position:96-409
               
               
               Cow position:chr11:63396722-63397031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):258, 51

               
               
               Conread position:97-373
               
               
               Cow position:chr11:4199179-4199451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):211, 45

               
               
               Conread position:98-399
               
               
               Cow position:chr11:8437782-8437484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):190, 41

               
               
               Conread position:99-356
               
               
               Cow position:chr11:41280948-41281206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:99-402
               
               
               Cow position:chr11:36977714-36978012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:100-309
               
               
               Cow position:chr11:35803043-35803251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):144, 47

               
               
               Conread position:100-396
               
               
               Cow position:chr11:35536497-35536775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:101-396
               
               
               Cow position:chr11:1067532-1067239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:101-397
               
               
               Cow position:chr11:7013833-7013526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):163, 86

               
               
               Conread position:101-399
               
               
               Cow position:chr11:3715146-3715442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:101-399
               
               
               Cow position:chr11:36914657-36914363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:102-310
               
               
               Cow position:chr11:62778358-62778557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:102-357
               
               
               Cow position:chr11:82289486-82289749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 91

               
               
               Conread position:102-359
               
               
               Cow position:chr11:35926995-35926746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:102-373
               
               
               Cow position:chr11:32398548-32398818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):192, 54

               
               
               Conread position:104-383
               
               
               Cow position:chr11:33409347-33409079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:104-427
               
               
               Cow position:chr11:72870814-72871128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:105-323
               
               
               Cow position:chr11:76835716-76835496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:105-344
               
               
               Cow position:chr11:31410969-31410732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:105-407
               
               
               Cow position:chr11:8457988-8457690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):154, 34

               
               
               Conread position:109-375
               
               
               Cow position:chr11:18910960-18910704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):260, 34

               
               
               Conread position:109-385
               
               
               Cow position:chr11:83042343-83042051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:109-431
               
               
               Cow position:chr11:4052315-4052009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):179, 23

               
               
               Conread position:110-316
               
               
               Cow position:chr11:2344174-2344376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:112-373
               
               
               Cow position:chr11:17721883-17721624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:112-400
               
               
               Cow position:chr11:62578723-62579005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:114-375
               
               
               Cow position:chr11:4637250-4636996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:114-376
               
               
               Cow position:chr11:30867104-30867357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:116-388
               
               
               Cow position:chr11:57503407-57503672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):187, 29

               
               
               Conread position:117-403
               
               
               Cow position:chr11:953282-953566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:118-379
               
               
               Cow position:chr11:7559925-7560184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:118-400
               
               
               Cow position:chr11:20194502-20194219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:120-383
               
               
               Cow position:chr11:57608527-57608279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:120-399
               
               
               Cow position:chr11:55636301-55636022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:121-425
               
               
               Cow position:chr11:22102975-22102673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 162

               
               
               Conread position:124-379
               
               
               Cow position:chr11:29699768-29699504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:128-421
               
               
               Cow position:chr11:1932557-1932261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 153

               
               
               Conread position:130-397
               
               
               Cow position:chr11:29677139-29677408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 153

               
               
               Conread position:132-363
               
               
               Cow position:chr11:39855073-39854855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:134-379
               
               
               Cow position:chr11:37989678-37989440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:134-418
               
               
               Cow position:chr11:3219906-3220183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):217, 141

               
               
               Conread position:135-421
               
               
               Cow position:chr11:30172251-30172524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 58

               
               
               Conread position:137-331
               
               
               Cow position:chr11:45849554-45849361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:137-393
               
               
               Cow position:chr11:20205908-20205660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):244, 142

               
               
               Conread position:137-396
               
               
               Cow position:chr11:36520816-36521080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 149

               
               
               Conread position:137-401
               
               
               Cow position:chr11:30893755-30893492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:137-417
               
               
               Cow position:chr11:71854336-71854061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:138-400
               
               
               Cow position:chr11:5219215-5218959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:140-413
               
               
               Cow position:chr11:62663285-62663031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:142-390
               
               
               Cow position:chr11:2639708-2639450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:142-416
               
               
               Cow position:chr11:80893730-80894001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 52

               
               
               Conread position:144-409
               
               
               Cow position:chr11:4225048-4225304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):235, 61

               
               
               Conread position:145-349
               
               
               Cow position:chr11:4392404-4392193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):6, 125

               
               
               Conread position:145-409
               
               
               Cow position:chr11:3714777-3715035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):252, 46

               
               
               Conread position:146-382
               
               
               Cow position:chr11:71935002-71934761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):179, 121

               
               
               Conread position:146-386
               
               
               Cow position:chr11:34644608-34644847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):49, 60

               
               
               Conread position:146-398
               
               
               Cow position:chr11:32710467-32710716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):113, 107

               
               
               Conread position:146-401
               
               
               Cow position:chr11:25119978-25119734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:146-401
               
               
               Cow position:chr11:35443997-35444249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:147-377
               
               
               Cow position:chr11:29786544-29786312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):139, 9

               
               
               Conread position:147-379
               
               
               Cow position:chr11:15382549-15382312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:147-379
               
               
               Cow position:chr11:18924699-18924930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:147-379
               
               
               Cow position:chr11:19119029-19118799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:147-379
               
               
               Cow position:chr11:35669998-35669783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:147-379
               
               
               Cow position:chr11:41438233-41438002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:147-385
               
               
               Cow position:chr11:19657268-19657026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):31, 141

               
               
               Conread position:147-391
               
               
               Cow position:chr11:56311642-56311402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):231, 112

               
               
               Conread position:147-423
               
               
               Cow position:chr11:61675422-61675693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):218, 118

               
               
               Conread position:148-380
               
               
               Cow position:chr11:18447537-18447317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:148-382
               
               
               Cow position:chr11:9237890-9237662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:148-382
               
               
               Cow position:chr11:10956918-10956688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):167, 115

               
               
               Conread position:148-395
               
               
               Cow position:chr11:62811252-62811493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:148-409
               
               
               Cow position:chr11:77013739-77013983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:149-379
               
               
               Cow position:chr11:35352083-35351850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):78, 51

               
               
               Conread position:149-387
               
               
               Cow position:chr11:30964302-30964537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):127, 24

               
               
               Conread position:149-388
               
               
               Cow position:chr11:7500698-7500944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:149-396
               
               
               Cow position:chr11:897629-897864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:149-399
               
               
               Cow position:chr11:68883674-68883922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:149-421
               
               
               Cow position:chr11:63866703-63866432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):117, 39

               
               
               Conread position:149-423
               
               
               Cow position:chr11:62889938-62889664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):229, 130

               
               
               Conread position:149-431
               
               
               Cow position:chr11:5231697-5231417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:152-387
               
               
               Cow position:chr11:21885792-21886020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:152-389
               
               
               Cow position:chr11:46922927-46922694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:152-395
               
               
               Cow position:chr11:43914252-43914489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:152-398
               
               
               Cow position:chr11:54428579-54428821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:152-399
               
               
               Cow position:chr11:41213001-41213255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 134

               
               
               Conread position:152-401
               
               
               Cow position:chr11:35562678-35562924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:153-375
               
               
               Cow position:chr11:39554238-39554009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:153-398
               
               
               Cow position:chr11:85571845-85571605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:156-399
               
               
               Cow position:chr11:30895040-30894800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:158-396
               
               
               Cow position:chr11:32260499-32260731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):169, 30

               
               
               Conread position:161-392
               
               
               Cow position:chr11:3896731-3896499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:161-399
               
               
               Cow position:chr11:66939625-66939387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):59, 53

               
               
               Conread position:161-415
               
               
               Cow position:chr11:15369355-15369608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:162-375
               
               
               Cow position:chr11:6297111-6296897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 91

               
               
               Conread position:162-398
               
               
               Cow position:chr11:63975098-63975335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):217, 117

               
               
               Conread position:162-401
               
               
               Cow position:chr11:34968645-34968409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:162-425
               
               
               Cow position:chr11:35923823-35924084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:163-360
               
               
               Cow position:chr11:75090249-75090055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:163-368
               
               
               Cow position:chr11:21173464-21173265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:163-370
               
               
               Cow position:chr11:35109568-35109366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):63, 38

               
               
               Conread position:163-379
               
               
               Cow position:chr11:46427438-46427224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 184

               
               
               Conread position:163-379
               
               
               Cow position:chr11:69417373-69417586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):42, 53

               
               
               Conread position:163-400
               
               
               Cow position:chr11:37436017-37435786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):224, 12

               
               
               Conread position:163-401
               
               
               Cow position:chr11:8259045-8259281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:163-419
               
               
               Cow position:chr11:7315179-7314925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):94, 90

               
               
               Conread position:164-394
               
               
               Cow position:chr11:17638564-17638322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):140, 115

               
               
               Conread position:165-379
               
               
               Cow position:chr11:2900749-2900530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:165-391
               
               
               Cow position:chr11:30843047-30842829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):219, 112

               
               
               Conread position:165-398
               
               
               Cow position:chr11:55399176-55398948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):217, 10

               
               
               Conread position:165-415
               
               
               Cow position:chr11:40517144-40516898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:166-408
               
               
               Cow position:chr11:45350539-45350298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:167-381
               
               
               Cow position:chr11:60486446-60486231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:168-401
               
               
               Cow position:chr11:78820126-78820356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):204, 49

               
               
               Conread position:168-421
               
               
               Cow position:chr11:25603924-25604177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:171-390
               
               
               Cow position:chr11:25783690-25783909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):167, 108

               
               
               Conread position:173-367
               
               
               Cow position:chr11:35149378-35149573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 85

               
               
               Conread position:174-401
               
               
               Cow position:chr11:25968870-25968650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:175-379
               
               
               Cow position:chr11:74427659-74427862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:175-400
               
               
               Cow position:chr11:10562990-10563208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:175-417
               
               
               Cow position:chr11:46884355-46884595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):213, 94

               
               
               Conread position:177-379
               
               
               Cow position:chr11:35183005-35182804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:177-408
               
               
               Cow position:chr11:87172093-87171862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):210, 102

               
               
               Conread position:178-373
               
               
               Cow position:chr11:68326879-68326685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:178-401
               
               
               Cow position:chr11:21830225-21830003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):202, 92

               
               
               Conread position:178-411
               
               
               Cow position:chr11:47314447-47314210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):112, 34

               
               
               Conread position:179-427
               
               
               Cow position:chr11:77017227-77017463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):216, 85

               
               
               Conread position:179-427
               
               
               Cow position:chr11:86895362-86895604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):207, 100

               
               
               Conread position:180-403
               
               
               Cow position:chr11:49396539-49396318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):194, 92

               
               
               Conread position:181-390
               
               
               Cow position:chr11:1980280-1980071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):110, 99

               
               
               Conread position:181-401
               
               
               Cow position:chr11:12555320-12555101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:191-397
               
               
               Cow position:chr11:36092919-36092716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:193-406
               
               
               Cow position:chr11:42064225-42064012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):190, 68

               
               
               Conread position:194-390
               
               
               Cow position:chr11:42084675-42084478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):118, 85

               
               
               Conread position:194-392
               
               
               Cow position:chr11:30322492-30322298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:194-396
               
               
               Cow position:chr11:36917776-36917566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 65

               
               
               Conread position:194-401
               
               
               Cow position:chr11:36361640-36361436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:194-411
               
               
               Cow position:chr11:19579015-19578808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:195-372
               
               
               Cow position:chr11:2484793-2484620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:195-391
               
               
               Cow position:chr11:41278187-41278382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:196-388
               
               
               Cow position:chr11:10066351-10066541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:197-394
               
               
               Cow position:chr11:34778440-34778244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:202-404
               
               
               Cow position:chr11:35733075-35732876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:203-401
               
               
               Cow position:chr11:76896365-76896169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:209-379
               
               
               Cow position:chr11:32108673-32108505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:210-368
               
               
               Cow position:chr11:26343118-26343274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:210-379
               
               
               Cow position:chr11:7427924-7427751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:210-388
               
               
               Cow position:chr11:20234701-20234878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:210-395
               
               
               Cow position:chr11:36847184-36847370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:211-379
               
               
               Cow position:chr11:4389921-4390086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:211-387
               
               
               Cow position:chr11:74152737-74152557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):108, 68

               
               
               Conread position:211-395
               
               
               Cow position:chr11:53651658-53651840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):170, 68

               
               
               Conread position:211-400
               
               
               Cow position:chr11:64781104-64781291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:212-382
               
               
               Cow position:chr11:42497863-42498030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:212-391
               
               
               Cow position:chr11:46245846-46245663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:212-396
               
               
               Cow position:chr11:67538099-67537914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):172, 68

               
               
               Conread position:212-396
               
               
               Cow position:chr11:81066031-81065850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:212-400
               
               
               Cow position:chr11:35924079-35924265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:212-409
               
               
               Cow position:chr11:23220381-23220573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:212-410
               
               
               Cow position:chr11:21590404-21590603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:213-405
               
               
               Cow position:chr11:73940544-73940355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:215-390
               
               
               Cow position:chr11:35544105-35544280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:216-407
               
               
               Cow position:chr11:11483333-11483533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 64

               
               
               Conread position:217-391
               
               
               Cow position:chr11:23278941-23278764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 62

               
               
               Conread position:217-395
               
               
               Cow position:chr11:15591451-15591281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:217-424
               
               
               Cow position:chr11:32653312-32653514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:218-349
               
               
               Cow position:chr11:34136265-34136394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:218-373
               
               
               Cow position:chr11:63484962-63485109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:218-375
               
               
               Cow position:chr11:60720431-60720276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:218-378
               
               
               Cow position:chr11:63475648-63475489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 61

               
               
               Conread position:218-379
               
               
               Cow position:chr11:36300557-36300401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:218-379
               
               
               Cow position:chr11:60296754-60296921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:218-382
               
               
               Cow position:chr11:26442480-26442317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:218-382
               
               
               Cow position:chr11:71303603-71303765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:218-386
               
               
               Cow position:chr11:79548913-79548743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):131, 57

               
               
               Conread position:218-387
               
               
               Cow position:chr11:49486803-49486980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:218-390
               
               
               Cow position:chr11:4411844-4411679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):139, 61

               
               
               Conread position:218-390
               
               
               Cow position:chr11:46010229-46010065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:218-393
               
               
               Cow position:chr11:63499105-63498933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):159, 61

               
               
               Conread position:218-398
               
               
               Cow position:chr11:5176352-5176178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):160, 47

               
               
               Conread position:218-398
               
               
               Cow position:chr11:77241729-77241904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:218-399
               
               
               Cow position:chr11:7652042-7651857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):138, 51

               
               
               Conread position:218-400
               
               
               Cow position:chr11:79666237-79666058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:218-401
               
               
               Cow position:chr11:68570356-68570176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:218-401
               
               
               Cow position:chr11:83028018-83028200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:218-402
               
               
               Cow position:chr11:47411865-47412048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):158, 48

               
               
               Conread position:218-402
               
               
               Cow position:chr11:57767214-57767398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):171, 64

               
               
               Conread position:218-402
               
               
               Cow position:chr11:62102423-62102243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:218-405
               
               
               Cow position:chr11:80370138-80370319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:218-408
               
               
               Cow position:chr11:47784799-47784989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:218-409
               
               
               Cow position:chr11:38836-39031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 62

               
               
               Conread position:218-412
               
               
               Cow position:chr11:18777575-18777374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:218-413
               
               
               Cow position:chr11:46314035-46314232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):89, 61

               
               
               Conread position:218-414
               
               
               Cow position:chr11:67208277-67208470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):163, 52

               
               
               Conread position:218-415
               
               
               Cow position:chr11:6320108-6319912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:218-415
               
               
               Cow position:chr11:17517423-17517617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:218-419
               
               
               Cow position:chr11:32782859-32782655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 64

               
               
               Conread position:218-423
               
               
               Cow position:chr11:68660590-68660388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:218-431
               
               
               Cow position:chr11:33369175-33369388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):170, 61

               
               
               Conread position:218-431
               
               
               Cow position:chr11:44176620-44176824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:218-431
               
               
               Cow position:chr11:76248074-76248282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):160, 56

               
               
               Conread position:219-367
               
               
               Cow position:chr11:2835884-2836031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:219-379
               
               
               Cow position:chr11:37100147-37099989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:219-379
               
               
               Cow position:chr11:58048357-58048514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:219-390
               
               
               Cow position:chr11:5559307-5559477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:219-390
               
               
               Cow position:chr11:25614788-25614609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:219-391
               
               
               Cow position:chr11:41140912-41141080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:219-397
               
               
               Cow position:chr11:5264122-5264298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):159, 61

               
               
               Conread position:219-397
               
               
               Cow position:chr11:21124585-21124407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):161, 61

               
               
               Conread position:219-400
               
               
               Cow position:chr11:37564899-37565073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:219-412
               
               
               Cow position:chr11:12079862-12080058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 60

               
               
               Conread position:219-412
               
               
               Cow position:chr11:33373991-33374180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:219-423
               
               
               Cow position:chr11:17553055-17552857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:219-424
               
               
               Cow position:chr11:32800651-32800855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):180, 50

               
               
               Conread position:219-426
               
               
               Cow position:chr11:35139934-35140149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):127, 60

               
               
               Conread position:219-431
               
               
               Cow position:chr11:36136135-36136342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:220-379
               
               
               Cow position:chr11:54872733-54872577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:220-379
               
               
               Cow position:chr11:63695819-63695655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:220-379
               
               
               Cow position:chr11:80008041-80007879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:220-389
               
               
               Cow position:chr11:30857064-30857228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:220-390
               
               
               Cow position:chr11:74839637-74839796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:220-391
               
               
               Cow position:chr11:37041998-37042169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:220-401
               
               
               Cow position:chr11:4621404-4621228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):160, 62

               
               
               Conread position:220-401
               
               
               Cow position:chr11:42065676-42065857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 60

               
               
               Conread position:220-401
               
               
               Cow position:chr11:49210795-49210612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):83, 58

               
               
               Conread position:220-402
               
               
               Cow position:chr11:15366946-15366774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:220-403
               
               
               Cow position:chr11:62606443-62606627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):166, 60

               
               
               Conread position:220-409
               
               
               Cow position:chr11:42236255-42236067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:220-418
               
               
               Cow position:chr11:38226269-38226468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):170, 61

               
               
               Conread position:220-418
               
               
               Cow position:chr11:43965851-43965671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:220-422
               
               
               Cow position:chr11:57937166-57936968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):164, 60

               
               
               Conread position:221-363
               
               
               Cow position:chr11:78672698-78672838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:221-390
               
               
               Cow position:chr11:15881393-15881226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:221-398
               
               
               Cow position:chr11:64607230-64607045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:221-402
               
               
               Cow position:chr11:82725201-82725385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:223-412
               
               
               Cow position:chr11:65431548-65431734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):176, 56

               
               
               Conread position:223-413
               
               
               Cow position:chr11:6429728-6429534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 57

               
               
               Conread position:223-431
               
               
               Cow position:chr11:65436250-65436456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 56

               
               
               Conread position:224-378
               
               
               Cow position:chr11:73637885-73638037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:224-379
               
               
               Cow position:chr11:20117105-20117260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):139, 44

               
               
               Conread position:224-379
               
               
               Cow position:chr11:30986669-30986819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:224-382
               
               
               Cow position:chr11:44016274-44016431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:224-389
               
               
               Cow position:chr11:18574825-18574661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:224-390
               
               
               Cow position:chr11:51683246-51683410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:224-396
               
               
               Cow position:chr11:64096635-64096463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):151, 55

               
               
               Conread position:224-398
               
               
               Cow position:chr11:56348800-56348629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:224-418
               
               
               Cow position:chr11:17369561-17369750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):163, 55

               
               
               Conread position:224-419
               
               
               Cow position:chr11:73977270-73977079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:224-431
               
               
               Cow position:chr11:22884443-22884640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:225-375
               
               
               Cow position:chr11:85986018-85985870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:225-400
               
               
               Cow position:chr11:26057619-26057444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 54

               
               
               Conread position:226-379
               
               
               Cow position:chr11:53888617-53888466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:226-415
               
               
               Cow position:chr11:25721964-25721788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:227-379
               
               
               Cow position:chr11:12768432-12768579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:227-383
               
               
               Cow position:chr11:63407727-63407880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:227-390
               
               
               Cow position:chr11:12742457-12742299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):152, 36

               
               
               Conread position:227-390
               
               
               Cow position:chr11:14492537-14492373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 53

               
               
               Conread position:227-398
               
               
               Cow position:chr11:70821078-70821243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:227-409
               
               
               Cow position:chr11:64126244-64126425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:227-420
               
               
               Cow position:chr11:18119537-18119727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):156, 17

               
               
               Conread position:228-385
               
               
               Cow position:chr11:63491052-63491208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:228-395
               
               
               Cow position:chr11:8828040-8828206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:228-397
               
               
               Cow position:chr11:33271465-33271630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:228-398
               
               
               Cow position:chr11:32817782-32817612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 52

               
               
               Conread position:228-401
               
               
               Cow position:chr11:24551425-24551595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:229-398
               
               
               Cow position:chr11:1265508-1265343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:229-423
               
               
               Cow position:chr11:28078529-28078717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):149, 50

               
               
               Conread position:231-386
               
               
               Cow position:chr11:2830694-2830846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:231-396
               
               
               Cow position:chr11:69035196-69035358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:232-388
               
               
               Cow position:chr11:26823148-26823304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):54, 43

               
               
               Conread position:232-413
               
               
               Cow position:chr11:35922159-35921981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):155, 37

               
               
               Conread position:232-430
               
               
               Cow position:chr11:38657145-38656949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:233-411
               
               
               Cow position:chr11:80695203-80695026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):143, 46

               
               
               Conread position:236-375
               
               
               Cow position:chr11:899476-899615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:237-377
               
               
               Cow position:chr11:32584858-32585002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:237-394
               
               
               Cow position:chr11:63977101-63977254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):138, 42

               
               
               Conread position:237-401
               
               
               Cow position:chr11:23279114-23278945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:237-409
               
               
               Cow position:chr11:6784252-6784417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:238-403
               
               
               Cow position:chr11:32587079-32586920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:239-379
               
               
               Cow position:chr11:53460742-53460881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:239-401
               
               
               Cow position:chr11:38643587-38643749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:239-408
               
               
               Cow position:chr11:15745040-15744870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:241-397
               
               
               Cow position:chr11:65939815-65939659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):148, 38

               
               
               Conread position:242-412
               
               
               Cow position:chr11:68592066-68592235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:249-369
               
               
               Cow position:chr11:70824658-70824537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:249-377
               
               
               Cow position:chr11:43594373-43594247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:255-409
               
               
               Cow position:chr11:43737046-43736893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:260-401
               
               
               Cow position:chr11:28092514-28092656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:265-390
               
               
               Cow position:chr11:22720061-22720190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:267-398
               
               
               Cow position:chr11:21637529-21637399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:269-402
               
               
               Cow position:chr11:22102685-22102553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:274-394
               
               
               Cow position:chr11:41295144-41295025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:284-409
               
               
               Cow position:chr11:13684633-13684511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:286-413
               
               
               Cow position:chr11:59744086-59744214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:300-401
               
               
               Cow position:chr11:50197408-50197307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.
Conread position:	1-128
Cow position:	chr11:6329053-6329187 (view UCSC Genome Browser custom track)
Alignm length:	135
Alignm identity:	104
Alignm E-value:	1e-20
Alignm gaps (pig, cow):	34, 0
Conread position:	1-134
Cow position:	chr11:68570865-68570722 (view UCSC Genome Browser custom track)
Alignm length:	144
Alignm identity:	115
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	34, 0
Conread position:	1-141
Cow position:	chr11:49105865-49106009 (view UCSC Genome Browser custom track)
Alignm length:	145
Alignm identity:	108
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	55, 0
Conread position:	1-185
Cow position:	chr11:17968768-17968590 (view UCSC Genome Browser custom track)
Alignm length:	188
Alignm identity:	140
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	34, 57
Conread position:	1-186
Cow position:	chr11:53130619-53130806 (view UCSC Genome Browser custom track)
Alignm length:	191
Alignm identity:	144
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	34, 55
Conread position:	1-190
Cow position:	chr11:8105590-8105782 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	147
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	34, 55
Conread position:	1-197
Cow position:	chr11:81174697-81174890 (view UCSC Genome Browser custom track)
Alignm length:	202
Alignm identity:	148
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	18, 56
Conread position:	1-217
Cow position:	chr11:17112819-17112606 (view UCSC Genome Browser custom track)
Alignm length:	224
Alignm identity:	161
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	34, 14
Conread position:	1-230
Cow position:	chr11:27386532-27386302 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	170
Alignm E-value:	5e-35
Alignm gaps (pig, cow):	59, 34
Conread position:	1-232
Cow position:	chr11:48042231-48041994 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	175
Alignm E-value:	9e-31
Alignm gaps (pig, cow):	34, 151
Conread position:	1-234
Cow position:	chr11:22932163-22931930 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	170
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	135, 82
Conread position:	1-242
Cow position:	chr11:42003149-42002899 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	183
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	11, 146
Conread position:	1-256
Cow position:	chr11:38874595-38874339 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	185
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	34, 58
Conread position:	1-257
Cow position:	chr11:7497836-7497583 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	182
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	34, 22
Conread position:	1-258
Cow position:	chr11:30120854-30120597 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	182
Alignm E-value:	4e-33
Alignm gaps (pig, cow):	82, 55
Conread position:	1-277
Cow position:	chr11:44642478-44642208 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	194
Alignm E-value:	6e-26
Alignm gaps (pig, cow):	31, 57
Conread position:	1-282
Cow position:	chr11:34829971-34829698 (view UCSC Genome Browser custom track)
Alignm length:	284
Alignm identity:	194
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	34, 52
Conread position:	1-291
Cow position:	chr11:29947119-29946817 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	208
Alignm E-value:	3e-29
Alignm gaps (pig, cow):	83, 38
Conread position:	1-293
Cow position:	chr11:23138253-23137955 (view UCSC Genome Browser custom track)
Alignm length:	302
Alignm identity:	210
Alignm E-value:	6e-37
Alignm gaps (pig, cow):	34, 128
Conread position:	1-294
Cow position:	chr11:42358932-42359219 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	204
Alignm E-value:	4e-33
Alignm gaps (pig, cow):	253, 26