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Cow genome map

           
Conread name:
           
rspc014_m21.y1
        

               
Conread position:
               
1-123
               

               
Cow position:
               
chr3:11640237-11640360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr3:22872249-22872109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr3:82657282-82657140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr3:15661897-15661747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr3:66866597-66866418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr3:4087363-4087176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr3:4031771-4031959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr3:49731835-49731654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr3:3062365-3062554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr3:61678494-61678691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr3:39328203-39328389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr3:80082015-80081824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr3:41367181-41366990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr3:59885187-59885384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr3:73590196-73590002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr3:84000415-84000616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr3:54959993-54960195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr3:43528434-43528199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr3:19708300-19708068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr3:65800396-65800637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr3:7940753-7940483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 154
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr3:15904168-15903884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 153
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr3:5097007-5097288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr3:79292637-79292916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr3:37599613-37599336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr3:38691603-38691314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr3:55272240-55271951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr3:42423528-42423229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr3:57624270-57624565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr3:82460984-82461283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:8393742-8394050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
86, 52
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr3:43571543-43571857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
41, 146
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr3:57760301-57760607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr3:70401705-70402007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr3:13507271-13507580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr3:70899703-70900002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
273, 34
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr3:80581474-80581767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr3:52863383-52863066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr3:28898420-28898091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr3:73708851-73709175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr3:53572947-53572608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 81
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr3:74134508-74134855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr3:45647942-45648285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr3:11987133-11987487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 61
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr3:18184871-18185238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 145
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr3:7566616-7566259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr3:2036101-2036467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr3:53046854-53046495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr3:16333609-16333970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 28
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr3:71161597-71161957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr3:51234293-51233933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr3:65413474-65413092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 54
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:6182397-6182058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:24939423-24939047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 145
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:29596197-29596570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:31419504-31419870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:45881712-45882074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:55733744-55734133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr3:56582646-56583023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr3:33253078-33252713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
38, 128
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr3:14552681-14553059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr3:18459717-18459350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr3:20802827-20802453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr3:38035789-38035397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr3:75853526-75853145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr3:60933218-60933611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:3985133-3985513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
83, 54
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr3:30463363-30462980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr3:3032198-3032605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr3:3556352-3556745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 139
               

               
Conread position:
               
1-401
               

               
Cow position:
               
chr3:79902306-79902693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr3:82175306-82175705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr3:51578518-51578119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr3:79220653-79221056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 143
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr3:30179886-30180290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr3:38863920-38864329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
1-413
               

               
Cow position:
               
chr3:70565935-70565522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr3:83215056-83215481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr3:65058503-65058915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr3:83798037-83797611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr3:20129745-20130153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr3:77271464-77271064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr3:79884684-79884266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
1-425
               

               
Cow position:
               
chr3:71237959-71238369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr3:59630696-59630284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 54
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr3:2674832-2675259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr3:39661647-39661228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr3:78739665-78739815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr3:30358830-30358644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr3:3164692-3164505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
2-190
               

               
Cow position:
               
chr3:27544525-27544344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr3:74878786-74878530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
31, 146
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr3:75727781-75727519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr3:68583199-68582925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
2-277
               

               
Cow position:
               
chr3:10347159-10347432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr3:37186637-37186944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
256, 49
               

               
Conread position:
               
2-367
               

               
Cow position:
               
chr3:66900938-66900564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
2-381
               

               
Cow position:
               
chr3:53221818-53222189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chr3:55010357-55009987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
2-395
               

               
Cow position:
               
chr3:67520372-67519986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 152
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr3:55124474-55124093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr3:31309551-31309136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr3:73764392-73763998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr3:52652270-52651847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr3:49382756-49383201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
3-134
               

               
Cow position:
               
chr3:8604209-8604076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr3:48578644-48578814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr3:36446912-36446683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr3:48296514-48296807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr3:59621833-59621536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr3:59588324-59588629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr3:60597350-60597706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 53
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chr3:45279269-45279641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr3:68303137-68303493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr3:23105561-23105175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr3:67698084-67698475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr3:63179673-63180083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
3-430
               

               
Cow position:
               
chr3:78443754-78443346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
4-124
               

               
Cow position:
               
chr3:18854898-18855023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-124
               

               
Cow position:
               
chr3:55971035-55971154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
4-134
               

               
Cow position:
               
chr3:25691559-25691692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-136
               

               
Cow position:
               
chr3:83921008-83921136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-137
               

               
Cow position:
               
chr3:79208193-79208057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
4-156
               

               
Cow position:
               
chr3:81401496-81401345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr3:42588159-42588329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 147
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr3:67161746-67161917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 139
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr3:39171674-39171498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr3:57554038-57553863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr3:62790210-62790022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr3:77496627-77496814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr3:27286035-27286219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 130
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr3:48269673-48269855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr3:61024498-61024311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr3:15859861-15859668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr3:49218509-49218311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr3:33698531-33698762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
31, 141
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr3:35005587-35005809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-242
               

               
Cow position:
               
chr3:46350469-46350713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr3:73759710-73759472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr3:4457266-4457020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr3:31047145-31046900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr3:66610037-66609787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr3:50259059-50258800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
4-261
               

               
Cow position:
               
chr3:75711117-75711367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chr3:22089473-22089215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 64
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chr3:79950423-79950164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr3:3637992-3638253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr3:45534490-45534219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr3:58969095-58968826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr3:71430402-71430123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr3:5374143-5374409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr3:38347011-38347276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 35
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr3:59101636-59101913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
4-288
               

               
Cow position:
               
chr3:83815983-83815701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr3:36672193-36671901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr3:62826813-62826527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chr3:5100960-5100679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chr3:49650190-49650481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chr3:58767080-58767356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chr3:2216169-2216464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chr3:26960785-26960492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr3:50614449-50614739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
4-301
               

               
Cow position:
               
chr3:116003-116290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-302
               

               
Cow position:
               
chr3:14598756-14599037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-302
               

               
Cow position:
               
chr3:34270727-34271015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr3:21547292-21546995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr3:46901002-46901303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr3:56059612-56059918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
4-310
               

               
Cow position:
               
chr3:15506257-15506558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr3:14263202-14263503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr3:55836019-55835709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr3:52017567-52017883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
64, 149
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr3:66884135-66883835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr3:67544063-67543758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 144
               

               
Conread position:
               
4-314
               

               
Cow position:
               
chr3:53112979-53113288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr3:72390890-72391228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
4-354
               

               
Cow position:
               
chr3:25944887-25945245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chr3:52607993-52608335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr3:69416978-69416623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
35, 149
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr3:49461127-49460768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr3:70334893-70334534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr3:74079833-74079479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr3:6689804-6690166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 145
               

               
Conread position:
               
4-366
               

               
Cow position:
               
chr3:74119636-74119268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
4-371
               

               
Cow position:
               
chr3:17222338-17221966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr3:8060933-8061289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr3:54434783-54435137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr3:57754674-57754306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
4-375
               

               
Cow position:
               
chr3:29891608-29891235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
4-375
               

               
Cow position:
               
chr3:58540723-58540346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-377
               

               
Cow position:
               
chr3:2538061-2538410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
4-378
               

               
Cow position:
               
chr3:49327747-49328108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
4-378
               

               
Cow position:
               
chr3:74234002-74234355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:2506671-2506301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:8393156-8393514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:14633178-14632805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:15158847-15159204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:17695195-17694827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:18686713-18687076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:29360329-29359989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
131, 12
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:48362891-48363244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:53790731-53790367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:70609432-70609800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
25, 54
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:75570642-75570271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
31, 104
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr3:77365486-77365117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
4-380
               

               
Cow position:
               
chr3:44932318-44932688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chr3:14725107-14725494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
4-383
               

               
Cow position:
               
chr3:17134149-17134510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
4-386
               

               
Cow position:
               
chr3:55947385-55947781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 140
               

               
Conread position:
               
4-387
               

               
Cow position:
               
chr3:5045000-5044627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
4-387
               

               
Cow position:
               
chr3:39970062-39969680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-387
               

               
Cow position:
               
chr3:53592891-53592503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 150
               

               
Conread position:
               
4-387
               

               
Cow position:
               
chr3:74088364-74087994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
4-389
               

               
Cow position:
               
chr3:73467428-73467811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr3:7763474-7763844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr3:14465898-14465528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr3:49119221-49118844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
37, 142
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr3:76172854-76172496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chr3:26065811-26066178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chr3:39066143-39066517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chr3:57577504-57577883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chr3:68881306-68880944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr3:13353167-13353552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr3:57764033-57764402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr3:73394926-73395304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr3:83700064-83699679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr3:7331307-7330946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr3:9641371-9641745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr3:17456459-17456076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr3:53875953-53875570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr3:70676030-70676422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 126
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr3:70895856-70896225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-395
               

               
Cow position:
               
chr3:80973163-80973542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 92
               

               
Conread position:
               
4-396
               

               
Cow position:
               
chr3:68647970-68648369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr3:48852158-48851774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
4-398
               

               
Cow position:
               
chr3:14601907-14601506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-398
               

               
Cow position:
               
chr3:29813053-29813418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
4-398
               

               
Cow position:
               
chr3:53909919-53910299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr3:25690595-25690995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr3:53095130-53094729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 137
               

               
Conread position:
               
4-399
               

               
Cow position:
               
chr3:54903378-54903762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
31, 140
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr3:2518727-2518341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
35, 135
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr3:13302042-13301655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr3:23169260-23168876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr3:30940626-30941000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
291, 31
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr3:65236829-65237218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
26, 133
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr3:188669-189073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr3:30009100-30008710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr3:38828572-38828948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr3:71497335-71496929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 80
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr3:79825110-79824723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
4-401
               

               
Cow position:
               
chr3:80564769-80565159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
4-402
               

               
Cow position:
               
chr3:36375738-36375341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 100
               

               
Conread position:
               
4-402
               

               
Cow position:
               
chr3:55319097-55318698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
4-403
               

               
Cow position:
               
chr3:54945934-54946320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-404
               

               
Cow position:
               
chr3:61539606-61539996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
4-407
               

               
Cow position:
               
chr3:78092700-78092308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
4-408
               

               
Cow position:
               
chr3:22844720-22845116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
4-408
               

               
Cow position:
               
chr3:55712235-55712633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 274
               

               
Conread position:
               
4-411
               

               
Cow position:
               
chr3:49482903-49482506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
4-412
               

               
Cow position:
               
chr3:53739380-53738979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
31, 44
               

               
Conread position:
               
4-412
               

               
Cow position:
               
chr3:54050210-54049823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
4-412
               

               
Cow position:
               
chr3:67929458-67929048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
4-413
               

               
Cow position:
               
chr3:78946027-78945613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-413
               

               
Cow position:
               
chr3:82020034-82019632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
4-415
               

               
Cow position:
               
chr3:18066940-18067345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
4-415
               

               
Cow position:
               
chr3:64281126-64280730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 143
               

               
Conread position:
               
4-417
               

               
Cow position:
               
chr3:27697173-27696750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 143
               

               
Conread position:
               
4-417
               

               
Cow position:
               
chr3:57273872-57274273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-418
               

               
Cow position:
               
chr3:55970314-55970724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
4-419
               

               
Cow position:
               
chr3:53384478-53384062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
4-425
               

               
Cow position:
               
chr3:17937029-17936623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
4-426
               

               
Cow position:
               
chr3:65968964-65969396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 196
               

               
Conread position:
               
4-431
               

               
Cow position:
               
chr3:2680322-2680757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
4-431
               

               
Cow position:
               
chr3:4319520-4319946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
4-431
               

               
Cow position:
               
chr3:15786373-15786800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
4-431
               

               
Cow position:
               
chr3:20842050-20841651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
5-149
               

               
Cow position:
               
chr3:8717056-8717206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chr3:55106632-55106436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
5-242
               

               
Cow position:
               
chr3:22820375-22820613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
5-350
               

               
Cow position:
               
chr3:44101776-44102113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 139
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr3:61857307-61857665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 218
               

               
Conread position:
               
5-387
               

               
Cow position:
               
chr3:13890274-13890666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
26, 144
               

               
Conread position:
               
5-389
               

               
Cow position:
               
chr3:43233314-43233688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
5-393
               

               
Cow position:
               
chr3:78077000-78077380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
5-405
               

               
Cow position:
               
chr3:7337963-7337580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
30, 61
               

               
Conread position:
               
5-409
               

               
Cow position:
               
chr3:72473718-72474127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 60
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chr3:50768489-50768890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
6-181
               

               
Cow position:
               
chr3:16362926-16362754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
6-379
               

               
Cow position:
               
chr3:63315943-63316302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
6-409
               

               
Cow position:
               
chr3:12705738-12705343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr3:5366584-5366884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
9-181
               

               
Cow position:
               
chr3:17952471-17952639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
9-182
               

               
Cow position:
               
chr3:27212173-27212346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
9-189
               

               
Cow position:
               
chr3:25059888-25060069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
9-198
               

               
Cow position:
               
chr3:28692623-28692431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
9-312
               

               
Cow position:
               
chr3:61278721-61279019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chr3:53150140-53150502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chr3:2393151-2392794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 135
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chr3:23408540-23408189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
75, 129
               

               
Conread position:
               
9-388
               

               
Cow position:
               
chr3:54374050-54373672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
9-390
               

               
Cow position:
               
chr3:63269036-63269420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
9-394
               

               
Cow position:
               
chr3:55819558-55819941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 246
               

               
Conread position:
               
9-397
               

               
Cow position:
               
chr3:55434142-55434523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
9-397
               

               
Cow position:
               
chr3:68156552-68156918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
219, 46
               

               
Conread position:
               
9-398
               

               
Cow position:
               
chr3:32310625-32310220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
30, 157
               

               
Conread position:
               
9-401
               

               
Cow position:
               
chr3:23471653-23471271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
9-413
               

               
Cow position:
               
chr3:75080581-75080957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
9-426
               

               
Cow position:
               
chr3:46006216-46005792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
12-284
               

               
Cow position:
               
chr3:74502508-74502242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
12-312
               

               
Cow position:
               
chr3:20678021-20677733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
24, 46
               

               
Conread position:
               
13-135
               

               
Cow position:
               
chr3:61361218-61361345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr3:66375131-66375318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
13-250
               

               
Cow position:
               
chr3:79271144-79270907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
29, 133
               

               
Conread position:
               
13-277
               

               
Cow position:
               
chr3:56555-56300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
13-305
               

               
Cow position:
               
chr3:80053728-80053440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
13-309
               

               
Cow position:
               
chr3:67704359-67704652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
13-313
               

               
Cow position:
               
chr3:15752816-15752524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
13-313
               

               
Cow position:
               
chr3:49790993-49790698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
13-320
               

               
Cow position:
               
chr3:17935113-17934818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
13-360
               

               
Cow position:
               
chr3:23876809-23877155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
13-372
               

               
Cow position:
               
chr3:61169616-61169978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
13-377
               

               
Cow position:
               
chr3:54506522-54506879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
13-379
               

               
Cow position:
               
chr3:17957277-17957636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
13-379
               

               
Cow position:
               
chr3:28908384-28908041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
13-387
               

               
Cow position:
               
chr3:80740383-80740736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
13-396
               

               
Cow position:
               
chr3:75687624-75687246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
13-400
               

               
Cow position:
               
chr3:80071941-80072341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
13-401
               

               
Cow position:
               
chr3:53318218-53318607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
13-404
               

               
Cow position:
               
chr3:16547494-16547869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
13-414
               

               
Cow position:
               
chr3:48241436-48241816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
13-423
               

               
Cow position:
               
chr3:68146025-68145641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
15-252
               

               
Cow position:
               
chr3:81359297-81359055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
5, 116
               

               
Conread position:
               
15-328
               

               
Cow position:
               
chr3:43726898-43727198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
306, 30
               

               
Conread position:
               
15-419
               

               
Cow position:
               
chr3:52487453-52487841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
16-245
               

               
Cow position:
               
chr3:34937661-34937889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
16-278
               

               
Cow position:
               
chr3:11711774-11712044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 140
               

               
Conread position:
               
16-278
               

               
Cow position:
               
chr3:61840096-61840353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
16-297
               

               
Cow position:
               
chr3:72675910-72676188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
16-298
               

               
Cow position:
               
chr3:14626340-14626053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
16-370
               

               
Cow position:
               
chr3:68627863-68627522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
16-377
               

               
Cow position:
               
chr3:59597003-59597346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
16-379
               

               
Cow position:
               
chr3:5365489-5365840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
16-379
               

               
Cow position:
               
chr3:15751904-15751548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
16-379
               

               
Cow position:
               
chr3:59473928-59474295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
16-383
               

               
Cow position:
               
chr3:56476498-56476853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
16-383
               

               
Cow position:
               
chr3:59718660-59719029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 130
               

               
Conread position:
               
16-388
               

               
Cow position:
               
chr3:32584974-32585338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
16-395
               

               
Cow position:
               
chr3:27274349-27274720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
16-396
               

               
Cow position:
               
chr3:15052134-15051762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
16-397
               

               
Cow position:
               
chr3:45211115-45211497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
16-399
               

               
Cow position:
               
chr3:75158177-75158548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
16-401
               

               
Cow position:
               
chr3:2025007-2025401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
16-401
               

               
Cow position:
               
chr3:55189938-55189553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
16-405
               

               
Cow position:
               
chr3:45667530-45667142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
16-412
               

               
Cow position:
               
chr3:56904337-56904734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 195
               

               
Conread position:
               
16-415
               

               
Cow position:
               
chr3:17710153-17710546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
16-418
               

               
Cow position:
               
chr3:59649072-59649471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
16-419
               

               
Cow position:
               
chr3:23448319-23447917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
16-428
               

               
Cow position:
               
chr3:79092577-79092163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 120
               

               
Conread position:
               
17-127
               

               
Cow position:
               
chr3:16891117-16891229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
17-129
               

               
Cow position:
               
chr3:56704725-56704611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
17-261
               

               
Cow position:
               
chr3:23445075-23444827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
17-287
               

               
Cow position:
               
chr3:34669909-34669647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
17-299
               

               
Cow position:
               
chr3:4050014-4050291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
17-373
               

               
Cow position:
               
chr3:54100899-54100544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
17-379
               

               
Cow position:
               
chr3:67930363-67929995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
17-379
               

               
Cow position:
               
chr3:76268159-76267798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
17-386
               

               
Cow position:
               
chr3:71231217-71231580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
17-387
               

               
Cow position:
               
chr3:210138-210505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
17-391
               

               
Cow position:
               
chr3:75050799-75050436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
17-395
               

               
Cow position:
               
chr3:26981883-26982242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 112
               

               
Conread position:
               
17-398
               

               
Cow position:
               
chr3:19198806-19199180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
17-401
               

               
Cow position:
               
chr3:14801567-14801940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
17-405
               

               
Cow position:
               
chr3:21112822-21112440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
17-409
               

               
Cow position:
               
chr3:53270647-53271041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
17-410
               

               
Cow position:
               
chr3:1830750-1830370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
17-413
               

               
Cow position:
               
chr3:83490902-83491284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
17-419
               

               
Cow position:
               
chr3:31298337-31297941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 132
               

               
Conread position:
               
17-420
               

               
Cow position:
               
chr3:26739599-26739208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
16, 126
               

               
Conread position:
               
19-190
               

               
Cow position:
               
chr3:59271362-59271533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
19-261
               

               
Cow position:
               
chr3:76015114-76015353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 34
               

               
Conread position:
               
19-332
               

               
Cow position:
               
chr3:75046054-75045742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
65, 37
               

               
Conread position:
               
19-368
               

               
Cow position:
               
chr3:59000927-59000599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
19-379
               

               
Cow position:
               
chr3:70762302-70761948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
19-379
               

               
Cow position:
               
chr3:76138300-76138635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
19-380
               

               
Cow position:
               
chr3:75479826-75480174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
19-394
               

               
Cow position:
               
chr3:54782196-54781801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
19-398
               

               
Cow position:
               
chr3:48252705-48253072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
19-400
               

               
Cow position:
               
chr3:15229004-15228645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
19-408
               

               
Cow position:
               
chr3:68586844-68587221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
19-408
               

               
Cow position:
               
chr3:76922842-76922471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
20-307
               

               
Cow position:
               
chr3:81507290-81507004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
21-298
               

               
Cow position:
               
chr3:56943788-56943506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
21-394
               

               
Cow position:
               
chr3:13380466-13380087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
32, 168
               

               
Conread position:
               
21-397
               

               
Cow position:
               
chr3:62046485-62046864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
21-420
               

               
Cow position:
               
chr3:81039921-81039532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
22-379
               

               
Cow position:
               
chr3:2648689-2648333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
22-400
               

               
Cow position:
               
chr3:19792716-19793093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
22-412
               

               
Cow position:
               
chr3:32787286-32787667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
23-399
               

               
Cow position:
               
chr3:59034861-59035240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
23-409
               

               
Cow position:
               
chr3:1890286-1889903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
23-430
               

               
Cow position:
               
chr3:19585687-19586095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 124
               

               
Conread position:
               
24-393
               

               
Cow position:
               
chr3:48810808-48810447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
213, 31
               

               
Conread position:
               
25-173
               

               
Cow position:
               
chr3:7858194-7858344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 123
               

               
Conread position:
               
25-367
               

               
Cow position:
               
chr3:19793762-19793427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
26-319
               

               
Cow position:
               
chr3:3649391-3649103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
26-396
               

               
Cow position:
               
chr3:15153524-15153881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
352, 11
               

               
Conread position:
               
26-418
               

               
Cow position:
               
chr3:49678953-49679349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
27-310
               

               
Cow position:
               
chr3:74242827-74243101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
29-307
               

               
Cow position:
               
chr3:59884239-59883964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
29-431
               

               
Cow position:
               
chr3:53508455-53508841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
30-379
               

               
Cow position:
               
chr3:76713491-76713137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
30-399
               

               
Cow position:
               
chr3:81087787-81087440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
229, 26
               

               
Conread position:
               
30-417
               

               
Cow position:
               
chr3:69144540-69144908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
32-282
               

               
Cow position:
               
chr3:55109778-55109532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
56, 8
               

               
Conread position:
               
32-294
               

               
Cow position:
               
chr3:26219213-26218960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
32-312
               

               
Cow position:
               
chr3:26874427-26874700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr3:30222022-30222314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
52, 112
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr3:12712082-12711783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
33-379
               

               
Cow position:
               
chr3:58765239-58764911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
33-389
               

               
Cow position:
               
chr3:68616487-68616150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
34-379
               

               
Cow position:
               
chr3:60264876-60264547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
34-389
               

               
Cow position:
               
chr3:59610882-59610535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
34-391
               

               
Cow position:
               
chr3:72342084-72342435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
34-400
               

               
Cow position:
               
chr3:3913612-3913246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
34-417
               

               
Cow position:
               
chr3:26489246-26488865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
34-425
               

               
Cow position:
               
chr3:41129560-41129937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
36-236
               

               
Cow position:
               
chr3:2851054-2850862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
36-422
               

               
Cow position:
               
chr3:9663331-9662946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
37-185
               

               
Cow position:
               
chr3:30701147-30701295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
37-401
               

               
Cow position:
               
chr3:77581950-77582304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
38-391
               

               
Cow position:
               
chr3:24468536-24468195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
39-233
               

               
Cow position:
               
chr3:32184177-32183985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
39-431
               

               
Cow position:
               
chr3:58527241-58527607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
40-307
               

               
Cow position:
               
chr3:24935215-24935468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
40-379
               

               
Cow position:
               
chr3:15443891-15443551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
41-388
               

               
Cow position:
               
chr3:29946240-29946570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
42-387
               

               
Cow position:
               
chr3:11200137-11199793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
43-408
               

               
Cow position:
               
chr3:79271877-79271507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
44-356
               

               
Cow position:
               
chr3:24548997-24548682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
44-398
               

               
Cow position:
               
chr3:33329661-33330029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
242, 0
               

               
Conread position:
               
45-190
               

               
Cow position:
               
chr3:1534771-1534626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
45-402
               

               
Cow position:
               
chr3:1785394-1785024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
47-391
               

               
Cow position:
               
chr3:11254310-11253978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
48-302
               

               
Cow position:
               
chr3:74846860-74846609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
49-393
               

               
Cow position:
               
chr3:48900486-48900140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 59
               

               
Conread position:
               
49-410
               

               
Cow position:
               
chr3:46146881-46146523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
50-408
               

               
Cow position:
               
chr3:174800-175147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
50-413
               

               
Cow position:
               
chr3:17058687-17058337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
51-402
               

               
Cow position:
               
chr3:15954233-15953886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
52-368
               

               
Cow position:
               
chr3:79196614-79196927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
52-372
               

               
Cow position:
               
chr3:12978762-12978447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr3:3883964-3883646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
32, 201
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr3:23920575-23920246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
52-397
               

               
Cow position:
               
chr3:34871423-34871759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
220, 31
               

               
Conread position:
               
52-399
               

               
Cow position:
               
chr3:59040420-59040765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
53-379
               

               
Cow position:
               
chr3:70334108-70333794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
55-294
               

               
Cow position:
               
chr3:46541970-46541734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
55-391
               

               
Cow position:
               
chr3:10958385-10958057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
56-363
               

               
Cow position:
               
chr3:73820511-73820206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
56-371
               

               
Cow position:
               
chr3:71238332-71238643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
56-373
               

               
Cow position:
               
chr3:3889708-3889408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
56-399
               

               
Cow position:
               
chr3:17331585-17331915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
35, 133
               

               
Conread position:
               
56-406
               

               
Cow position:
               
chr3:47417707-47417368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
56-406
               

               
Cow position:
               
chr3:79097962-79098301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
56-408
               

               
Cow position:
               
chr3:21015101-21014752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
56-419
               

               
Cow position:
               
chr3:74500097-74500468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
28, 234
               

               
Conread position:
               
56-426
               

               
Cow position:
               
chr3:51033229-51033592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
56-427
               

               
Cow position:
               
chr3:1517655-1517294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
28, 68
               

               
Conread position:
               
57-379
               

               
Cow position:
               
chr3:22221180-22221501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
57-388
               

               
Cow position:
               
chr3:78093524-78093209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
58-379
               

               
Cow position:
               
chr3:17235348-17235029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
123, 78
               

               
Conread position:
               
58-397
               

               
Cow position:
               
chr3:37041275-37041609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 101
               

               
Conread position:
               
58-407
               

               
Cow position:
               
chr3:42434472-42434122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
59-307
               

               
Cow position:
               
chr3:72504038-72503790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
59-401
               

               
Cow position:
               
chr3:64526710-64527043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
59-410
               

               
Cow position:
               
chr3:3656371-3656720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 88
               

               
Conread position:
               
60-410
               

               
Cow position:
               
chr3:30026239-30026583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
62-382
               

               
Cow position:
               
chr3:18179810-18180141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 217
               

               
Conread position:
               
63-371
               

               
Cow position:
               
chr3:7661718-7662024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
63-391
               

               
Cow position:
               
chr3:55177885-55177562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 218
               

               
Conread position:
               
64-313
               

               
Cow position:
               
chr3:84175959-84175712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
65-314
               

               
Cow position:
               
chr3:22509894-22510136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr3:5696862-5696549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
68-379
               

               
Cow position:
               
chr3:45183965-45183646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
68-402
               

               
Cow position:
               
chr3:42796638-42796320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
68-404
               

               
Cow position:
               
chr3:18144251-18143911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 82
               

               
Conread position:
               
68-406
               

               
Cow position:
               
chr3:35056108-35055777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 78
               

               
Conread position:
               
69-373
               

               
Cow position:
               
chr3:54740017-54739731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
69-409
               

               
Cow position:
               
chr3:14194307-14193985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 51
               

               
Conread position:
               
70-400
               

               
Cow position:
               
chr3:31225312-31225619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
316, 72
               

               
Conread position:
               
70-415
               

               
Cow position:
               
chr3:56678481-56678140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
74-400
               

               
Cow position:
               
chr3:48468059-48468371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
75-395
               

               
Cow position:
               
chr3:45700684-45700993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
76-379
               

               
Cow position:
               
chr3:58318074-58317768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
76-431
               

               
Cow position:
               
chr3:6403300-6403647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
79-382
               

               
Cow position:
               
chr3:83787318-83787620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
83-382
               

               
Cow position:
               
chr3:4268696-4268396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
53, 63
               

               
Conread position:
               
83-420
               

               
Cow position:
               
chr3:73837830-73837505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
84-387
               

               
Cow position:
               
chr3:18059589-18059887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
85-288
               

               
Cow position:
               
chr3:63177367-63177571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
85-379
               

               
Cow position:
               
chr3:19711446-19711162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
186, 54
               

               
Conread position:
               
85-389
               

               
Cow position:
               
chr3:15951023-15950731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
260, 48
               

               
Conread position:
               
85-389
               

               
Cow position:
               
chr3:21867149-21866853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
85-395
               

               
Cow position:
               
chr3:51402797-51403087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
139, 59
               

               
Conread position:
               
85-401
               

               
Cow position:
               
chr3:22668303-22668609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
172, 46
               

               
Conread position:
               
85-401
               

               
Cow position:
               
chr3:58134799-58134488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
85-408
               

               
Cow position:
               
chr3:55094346-55094027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
86-430
               

               
Cow position:
               
chr3:20034256-20033922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
87-397
               

               
Cow position:
               
chr3:26992457-26992765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
88-316
               

               
Cow position:
               
chr3:55983986-55984213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
47, 142
               

               
Conread position:
               
88-383
               

               
Cow position:
               
chr3:65019974-65019672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
180, 57
               

               
Conread position:
               
88-395
               

               
Cow position:
               
chr3:57792663-57792964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
241, 38
               

               
Conread position:
               
88-400
               

               
Cow position:
               
chr3:57704214-57704531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 65
               

               
Conread position:
               
89-373
               

               
Cow position:
               
chr3:9116920-9117203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
240, 39
               

               
Conread position:
               
89-402
               

               
Cow position:
               
chr3:61224856-61224549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 194
               

               
Conread position:
               
90-328
               

               
Cow position:
               
chr3:73460857-73461090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
171, 146
               

               
Conread position:
               
90-340
               

               
Cow position:
               
chr3:32409104-32409356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
131, 48
               

               
Conread position:
               
90-373
               

               
Cow position:
               
chr3:31361312-31361592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
108, 7
               

               
Conread position:
               
90-386
               

               
Cow position:
               
chr3:83988425-83988716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
208, 11
               

               
Conread position:
               
90-431
               

               
Cow position:
               
chr3:10841708-10842046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
99, 6
               

               
Conread position:
               
91-376
               

               
Cow position:
               
chr3:59945020-59945299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
91-401
               

               
Cow position:
               
chr3:3316918-3316614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
203, 43
               

               
Conread position:
               
91-401
               

               
Cow position:
               
chr3:59604737-59605040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
91-411
               

               
Cow position:
               
chr3:22165523-22165210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
93-375
               

               
Cow position:
               
chr3:75238354-75238632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
276, 48
               

               
Conread position:
               
93-399
               

               
Cow position:
               
chr3:77082129-77081841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
94-337
               

               
Cow position:
               
chr3:19626612-19626374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
188, 152
               

               
Conread position:
               
99-391
               

               
Cow position:
               
chr3:39912784-39912500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
99-397
               

               
Cow position:
               
chr3:20043688-20043403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
99-399
               

               
Cow position:
               
chr3:47753126-47753434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
195, 34
               

               
Conread position:
               
100-400
               

               
Cow position:
               
chr3:64196727-64197023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
288, 52
               

               
Conread position:
               
100-401
               

               
Cow position:
               
chr3:79813509-79813814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
101-387
               

               
Cow position:
               
chr3:75778157-75777886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 51
               

               
Conread position:
               
101-400
               

               
Cow position:
               
chr3:37647283-37647586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
102-394
               

               
Cow position:
               
chr3:4548920-4549209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 182
               

               
Conread position:
               
102-429
               

               
Cow position:
               
chr3:5707309-5706987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
104-429
               

               
Cow position:
               
chr3:80597630-80597950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
106-386
               

               
Cow position:
               
chr3:71474499-71474226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
108-318
               

               
Cow position:
               
chr3:74900727-74900522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
195, 28
               

               
Conread position:
               
108-379
               

               
Cow position:
               
chr3:63844840-63845115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
109-277
               

               
Cow position:
               
chr3:81277558-81277391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
109-361
               

               
Cow position:
               
chr3:84250632-84250392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
109-388
               

               
Cow position:
               
chr3:31350193-31349925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
109-388
               

               
Cow position:
               
chr3:48459420-48459143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
273, 145
               

               
Conread position:
               
109-410
               

               
Cow position:
               
chr3:69785714-69785411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
92, 24
               

               
Conread position:
               
109-413
               

               
Cow position:
               
chr3:73961787-73961486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
109-419
               

               
Cow position:
               
chr3:15672248-15671941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
110-362
               

               
Cow position:
               
chr3:11640641-11640894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
110-395
               

               
Cow position:
               
chr3:66631437-66631152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
214, 33
               

               
Conread position:
               
110-399
               

               
Cow position:
               
chr3:23203322-23203035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
43, 140
               

               
Conread position:
               
110-424
               

               
Cow position:
               
chr3:51609273-51608965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
260, 33
               

               
Conread position:
               
111-288
               

               
Cow position:
               
chr3:83928162-83928333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
111-385
               

               
Cow position:
               
chr3:84174215-84174485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
111-402
               

               
Cow position:
               
chr3:54481889-54481606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr3:19682607-19682881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
120, 169
               

               
Conread position:
               
114-390
               

               
Cow position:
               
chr3:59299493-59299761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
115-367
               

               
Cow position:
               
chr3:40145385-40145630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
115-383
               

               
Cow position:
               
chr3:48478114-48477864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
115-389
               

               
Cow position:
               
chr3:19900578-19900841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
116-389
               

               
Cow position:
               
chr3:47316461-47316191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
116-427
               

               
Cow position:
               
chr3:54067711-54068011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
117-312
               

               
Cow position:
               
chr3:4480860-4481053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
117-402
               

               
Cow position:
               
chr3:27976606-27976324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
118-373
               

               
Cow position:
               
chr3:10668958-10668710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
148, 26
               

               
Conread position:
               
120-373
               

               
Cow position:
               
chr3:14546924-14547168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
130-398
               

               
Cow position:
               
chr3:83889179-83889441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
131-394
               

               
Cow position:
               
chr3:33002324-33002575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
135-409
               

               
Cow position:
               
chr3:2637861-2638136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
160, 144
               

               
Conread position:
               
137-379
               

               
Cow position:
               
chr3:74644495-74644735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
137-410
               

               
Cow position:
               
chr3:8591434-8591162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
150, 8
               

               
Conread position:
               
137-417
               

               
Cow position:
               
chr3:80329251-80329527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
139-394
               

               
Cow position:
               
chr3:76269832-76270078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chr3:26338090-26337822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
140-396
               

               
Cow position:
               
chr3:14770942-14770695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
142-388
               

               
Cow position:
               
chr3:9120787-9121026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
143-416
               

               
Cow position:
               
chr3:46792327-46792591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 121
               

               
Conread position:
               
146-397
               

               
Cow position:
               
chr3:40213087-40212840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
232, 38
               

               
Conread position:
               
146-408
               

               
Cow position:
               
chr3:39606076-39605811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 140
               

               
Conread position:
               
147-390
               

               
Cow position:
               
chr3:11281713-11281956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
237, 132
               

               
Conread position:
               
147-399
               

               
Cow position:
               
chr3:49363056-49363303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
232, 132
               

               
Conread position:
               
147-399
               

               
Cow position:
               
chr3:53428968-53428720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
117, 13
               

               
Conread position:
               
148-373
               

               
Cow position:
               
chr3:81234337-81234557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
148-387
               

               
Cow position:
               
chr3:25905101-25904856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
148-387
               

               
Cow position:
               
chr3:59702120-59702359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
148-400
               

               
Cow position:
               
chr3:9026136-9025892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
190, 35
               

               
Conread position:
               
148-417
               

               
Cow position:
               
chr3:39996943-39996681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 125
               

               
Conread position:
               
149-375
               

               
Cow position:
               
chr3:1028697-1028475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
220, 44
               

               
Conread position:
               
149-382
               

               
Cow position:
               
chr3:12090622-12090855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
143, 92
               

               
Conread position:
               
149-390
               

               
Cow position:
               
chr3:23132220-23131982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
149-412
               

               
Cow position:
               
chr3:38248600-38248860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
150-420
               

               
Cow position:
               
chr3:82366079-82366346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
152-363
               

               
Cow position:
               
chr3:53084036-53083824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 129
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr3:49996771-49996538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
152-386
               

               
Cow position:
               
chr3:7581765-7581536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
153, 101
               

               
Conread position:
               
152-390
               

               
Cow position:
               
chr3:1011438-1011678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
152-390
               

               
Cow position:
               
chr3:29828465-29828227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
226, 127
               

               
Conread position:
               
152-396
               

               
Cow position:
               
chr3:73335236-73335470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
124, 116
               

               
Conread position:
               
152-396
               

               
Cow position:
               
chr3:81923847-81923600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
155, 56
               

               
Conread position:
               
152-398
               

               
Cow position:
               
chr3:5040355-5040111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
152-402
               

               
Cow position:
               
chr3:8974803-8975045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
152-403
               

               
Cow position:
               
chr3:75107726-75107974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 63
               

               
Conread position:
               
152-406
               

               
Cow position:
               
chr3:3584665-3584913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
153-370
               

               
Cow position:
               
chr3:26603602-26603380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
153-390
               

               
Cow position:
               
chr3:5305751-5305989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 64
               

               
Conread position:
               
153-396
               

               
Cow position:
               
chr3:13241123-13240877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
222, 116
               

               
Conread position:
               
155-383
               

               
Cow position:
               
chr3:8181996-8181770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
136, 67
               

               
Conread position:
               
155-408
               

               
Cow position:
               
chr3:59933326-59933579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
127, 96
               

               
Conread position:
               
158-379
               

               
Cow position:
               
chr3:84928061-84928282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 112
               

               
Conread position:
               
159-411
               

               
Cow position:
               
chr3:79272614-79272368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
234, 116
               

               
Conread position:
               
159-416
               

               
Cow position:
               
chr3:4071804-4071560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
161-375
               

               
Cow position:
               
chr3:70756680-70756468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
161-379
               

               
Cow position:
               
chr3:29334455-29334236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 121
               

               
Conread position:
               
161-396
               

               
Cow position:
               
chr3:6728369-6728130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
163, 106
               

               
Conread position:
               
161-404
               

               
Cow position:
               
chr3:44959903-44960143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
161-406
               

               
Cow position:
               
chr3:15973527-15973769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
125, 109
               

               
Conread position:
               
161-431
               

               
Cow position:
               
chr3:4120405-4120142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
220, 118
               

               
Conread position:
               
162-399
               

               
Cow position:
               
chr3:83770693-83770928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
162-404
               

               
Cow position:
               
chr3:73525276-73525035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
162-422
               

               
Cow position:
               
chr3:45823060-45822804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
162-430
               

               
Cow position:
               
chr3:75222465-75222729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
162-431
               

               
Cow position:
               
chr3:5149993-5149725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
163-368
               

               
Cow position:
               
chr3:72255456-72255254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
163-401
               

               
Cow position:
               
chr3:8814149-8813908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 7
               

               
Conread position:
               
163-408
               

               
Cow position:
               
chr3:41863587-41863821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
163-416
               

               
Cow position:
               
chr3:58452011-58452257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
164-390
               

               
Cow position:
               
chr3:22889053-22888827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 115
               

               
Conread position:
               
164-399
               

               
Cow position:
               
chr3:35624581-35624348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
164-417
               

               
Cow position:
               
chr3:54297518-54297267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 68
               

               
Conread position:
               
165-379
               

               
Cow position:
               
chr3:28902794-28902587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
165-417
               

               
Cow position:
               
chr3:18248917-18249167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chr3:5551847-5551610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 107
               

               
Conread position:
               
167-401
               

               
Cow position:
               
chr3:32317865-32317628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 106
               

               
Conread position:
               
167-423
               

               
Cow position:
               
chr3:32569820-32570075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 215
               

               
Conread position:
               
168-389
               

               
Cow position:
               
chr3:5703146-5703361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
173-386
               

               
Cow position:
               
chr3:47199154-47198944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
173-391
               

               
Cow position:
               
chr3:81666772-81666982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
175-423
               

               
Cow position:
               
chr3:45314319-45314571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
133, 109
               

               
Conread position:
               
177-425
               

               
Cow position:
               
chr3:82195463-82195709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
204, 77
               

               
Conread position:
               
177-431
               

               
Cow position:
               
chr3:46271812-46271557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
212, 107
               

               
Conread position:
               
178-388
               

               
Cow position:
               
chr3:12669114-12669323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
133, 41
               

               
Conread position:
               
178-401
               

               
Cow position:
               
chr3:79339601-79339378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
137, 44
               

               
Conread position:
               
178-428
               

               
Cow position:
               
chr3:65308476-65308229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
178-429
               

               
Cow position:
               
chr3:51329253-51329007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
220, 37
               

               
Conread position:
               
178-431
               

               
Cow position:
               
chr3:6724177-6724428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
179-362
               

               
Cow position:
               
chr3:83199491-83199671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
179-373
               

               
Cow position:
               
chr3:77171294-77171487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
46, 38
               

               
Conread position:
               
179-383
               

               
Cow position:
               
chr3:59271812-59272011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
200, 30
               

               
Conread position:
               
179-386
               

               
Cow position:
               
chr3:59947644-59947850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
179-389
               

               
Cow position:
               
chr3:985993-986200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
179-394
               

               
Cow position:
               
chr3:43389149-43388934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
207, 100
               

               
Conread position:
               
179-397
               

               
Cow position:
               
chr3:58101658-58101868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
179-430
               

               
Cow position:
               
chr3:70402623-70402866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
204, 55
               

               
Conread position:
               
180-415
               

               
Cow position:
               
chr3:31793904-31793671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
181-401
               

               
Cow position:
               
chr3:27286499-27286715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
193, 84
               

               
Conread position:
               
183-398
               

               
Cow position:
               
chr3:79893515-79893299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
200, 77
               

               
Conread position:
               
184-379
               

               
Cow position:
               
chr3:83671839-83672030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
184-383
               

               
Cow position:
               
chr3:25735922-25735724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
185-398
               

               
Cow position:
               
chr3:63201904-63202115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
193-389
               

               
Cow position:
               
chr3:37641318-37641511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
194-379
               

               
Cow position:
               
chr3:59268365-59268549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr3:48483172-48483363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
186, 85
               

               
Conread position:
               
194-389
               

               
Cow position:
               
chr3:55730475-55730281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
194-392
               

               
Cow position:
               
chr3:44207884-44207689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
194-394
               

               
Cow position:
               
chr3:53604752-53604554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
194-397
               

               
Cow position:
               
chr3:34392227-34392033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
194-402
               

               
Cow position:
               
chr3:51150122-51150328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
194-409
               

               
Cow position:
               
chr3:3164116-3163908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 133
               

               
Conread position:
               
195-379
               

               
Cow position:
               
chr3:52845551-52845730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
195-383
               

               
Cow position:
               
chr3:62789961-62789770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
195-412
               

               
Cow position:
               
chr3:28904965-28905181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
196-382
               

               
Cow position:
               
chr3:6265781-6265968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
46, 85
               

               
Conread position:
               
196-421
               

               
Cow position:
               
chr3:65022290-65022526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
95, 83
               

               
Conread position:
               
201-425
               

               
Cow position:
               
chr3:8147525-8147302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
176, 121
               

               
Conread position:
               
204-379
               

               
Cow position:
               
chr3:2636952-2637120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
204-413
               

               
Cow position:
               
chr3:13927819-13928029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
206-389
               

               
Cow position:
               
chr3:77098817-77098638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
177, 76
               

               
Conread position:
               
208-375
               

               
Cow position:
               
chr3:28643419-28643582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
210-360
               

               
Cow position:
               
chr3:70431440-70431590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
210-379
               

               
Cow position:
               
chr3:23037499-23037333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
210-395
               

               
Cow position:
               
chr3:28884151-28883975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
210-398
               

               
Cow position:
               
chr3:19044756-19044573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
171, 27
               

               
Conread position:
               
211-391
               

               
Cow position:
               
chr3:11029899-11029722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
67, 155
               

               
Conread position:
               
211-394
               

               
Cow position:
               
chr3:51153056-51153236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
170, 54
               

               
Conread position:
               
211-400
               

               
Cow position:
               
chr3:76056274-76056093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
211-401
               

               
Cow position:
               
chr3:19611341-19611153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
163, 55
               

               
Conread position:
               
212-375
               

               
Cow position:
               
chr3:57706745-57706580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
212-382
               

               
Cow position:
               
chr3:35883923-35883754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
212-383
               

               
Cow position:
               
chr3:61680329-61680496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
212-385
               

               
Cow position:
               
chr3:24220566-24220399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
212-389
               

               
Cow position:
               
chr3:80173011-80173184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
212-390
               

               
Cow position:
               
chr3:62312808-62312983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
212-390
               

               
Cow position:
               
chr3:79105571-79105395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
212-394
               

               
Cow position:
               
chr3:48300449-48300268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
165, 51
               

               
Conread position:
               
212-398
               

               
Cow position:
               
chr3:28676208-28676386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
174, 68
               

               
Conread position:
               
212-400
               

               
Cow position:
               
chr3:6299468-6299654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
212-400
               

               
Cow position:
               
chr3:32248023-32248209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
212-400
               

               
Cow position:
               
chr3:59926632-59926833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
212-401
               

               
Cow position:
               
chr3:635189-635377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
174, 67
               

               
Conread position:
               
212-405
               

               
Cow position:
               
chr3:38331600-38331412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
212-408
               

               
Cow position:
               
chr3:64800538-64800342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
212-417
               

               
Cow position:
               
chr3:76300783-76300989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
212-420
               

               
Cow position:
               
chr3:42589110-42589317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
212-420
               

               
Cow position:
               
chr3:58614468-58614679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
86, 67
               

               
Conread position:
               
213-425
               

               
Cow position:
               
chr3:58558292-58558502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
214-403
               

               
Cow position:
               
chr3:48537376-48537564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
216-393
               

               
Cow position:
               
chr3:2636914-2636745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
217-373
               

               
Cow position:
               
chr3:80023294-80023146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
217-376
               

               
Cow position:
               
chr3:20021286-20021440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
217-379
               

               
Cow position:
               
chr3:49787575-49787731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
217-400
               

               
Cow position:
               
chr3:58929518-58929340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
217-418
               

               
Cow position:
               
chr3:75871495-75871696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
187, 62
               

               
Conread position:
               
217-422
               

               
Cow position:
               
chr3:57790630-57790826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
217-431
               

               
Cow position:
               
chr3:44534519-44534306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
218-353
               

               
Cow position:
               
chr3:17039630-17039766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
218-363
               

               
Cow position:
               
chr3:5003651-5003791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
218-373
               

               
Cow position:
               
chr3:63069348-63069192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
218-373
               

               
Cow position:
               
chr3:67942518-67942364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
218-379
               

               
Cow position:
               
chr3:59681886-59681732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
218-383
               

               
Cow position:
               
chr3:4931823-4931651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
218-383
               

               
Cow position:
               
chr3:25702324-25702152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
218-383
               

               
Cow position:
               
chr3:29234663-29234499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
84, 51
               

               
Conread position:
               
218-387
               

               
Cow position:
               
chr3:35802923-35802753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 51
               

               
Conread position:
               
218-387
               

               
Cow position:
               
chr3:41366692-41366517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
218-388
               

               
Cow position:
               
chr3:64910078-64909911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
218-389
               

               
Cow position:
               
chr3:62186169-62186343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
97, 61
               

               
Conread position:
               
218-390
               

               
Cow position:
               
chr3:46259728-46259898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
218-390
               

               
Cow position:
               
chr3:68289694-68289868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 166
               

               
Conread position:
               
218-390
               

               
Cow position:
               
chr3:72027655-72027825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
218-391
               

               
Cow position:
               
chr3:3453597-3453770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
156, 61
               

               
Conread position:
               
218-391
               

               
Cow position:
               
chr3:56754515-56754347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
154, 19
               

               
Conread position:
               
218-394
               

               
Cow position:
               
chr3:55106131-55105955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
159, 61
               

               
Conread position:
               
218-394
               

               
Cow position:
               
chr3:78071773-78071601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
156, 54
               

               
Conread position:
               
218-395
               

               
Cow position:
               
chr3:3011164-3011336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
218-395
               

               
Cow position:
               
chr3:21694242-21694418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
218-397
               

               
Cow position:
               
chr3:2016453-2016625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
218-398
               

               
Cow position:
               
chr3:63860593-63860418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
218-399
               

               
Cow position:
               
chr3:7381815-7381639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
218-399
               

               
Cow position:
               
chr3:18700093-18699914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
218-399
               

               
Cow position:
               
chr3:59317720-59317894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
218-400
               

               
Cow position:
               
chr3:68624235-68624420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
218-400
               

               
Cow position:
               
chr3:79398160-79398341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
218-400
               

               
Cow position:
               
chr3:83934743-83934921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
154, 61
               

               
Conread position:
               
218-402
               

               
Cow position:
               
chr3:75966766-75966585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
51, 84
               

               
Conread position:
               
218-410
               

               
Cow position:
               
chr3:49733035-49732838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 40
               

               
Conread position:
               
218-414
               

               
Cow position:
               
chr3:74515320-74515126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
218-424
               

               
Cow position:
               
chr3:83705520-83705316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
218-426
               

               
Cow position:
               
chr3:44594639-44594843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
218-426
               

               
Cow position:
               
chr3:84807310-84807104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
170, 61
               

               
Conread position:
               
218-428
               

               
Cow position:
               
chr3:15160538-15160740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
219-373
               

               
Cow position:
               
chr3:6579504-6579649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
219-379
               

               
Cow position:
               
chr3:28897003-28896846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
219-384
               

               
Cow position:
               
chr3:621453-621621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
219-386
               

               
Cow position:
               
chr3:18479279-18479114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
219-390
               

               
Cow position:
               
chr3:80958492-80958324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
219-394
               

               
Cow position:
               
chr3:16710781-16710604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
219-399
               

               
Cow position:
               
chr3:59588657-59588840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
73, 60
               

               
Conread position:
               
219-402
               

               
Cow position:
               
chr3:33460590-33460399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
219-409
               

               
Cow position:
               
chr3:81255797-81255607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
165, 14
               

               
Conread position:
               
219-411
               

               
Cow position:
               
chr3:42483945-42484138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
219-411
               

               
Cow position:
               
chr3:78258736-78258544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
219-413
               

               
Cow position:
               
chr3:9718233-9718042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
219-415
               

               
Cow position:
               
chr3:34931782-34931589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
219-415
               

               
Cow position:
               
chr3:70319786-70319587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
73, 50
               

               
Conread position:
               
219-431
               

               
Cow position:
               
chr3:15859360-15859150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
159, 45
               

               
Conread position:
               
219-431
               

               
Cow position:
               
chr3:84137796-84137588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
220-373
               

               
Cow position:
               
chr3:4518163-4518015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
220-377
               

               
Cow position:
               
chr3:34164266-34164115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:562774-562614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:8523134-8522979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:22868700-22868541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 61
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:41510596-41510753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:43896040-43895888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
220-379
               

               
Cow position:
               
chr3:74050682-74050531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
220-383
               

               
Cow position:
               
chr3:26393280-26393120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
220-391
               

               
Cow position:
               
chr3:77665531-77665362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
145, 12
               

               
Conread position:
               
220-394
               

               
Cow position:
               
chr3:3262814-3262633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 59
               

               
Conread position:
               
220-396
               

               
Cow position:
               
chr3:68094164-68094344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
220-400
               

               
Cow position:
               
chr3:66885010-66884832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
163, 59
               

               
Conread position:
               
220-401
               

               
Cow position:
               
chr3:22924355-22924184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
220-401
               

               
Cow position:
               
chr3:82425059-82424880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
159, 59
               

               
Conread position:
               
220-411
               

               
Cow position:
               
chr3:11027294-11027484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
220-423
               

               
Cow position:
               
chr3:43016431-43016220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
74, 60
               

               
Conread position:
               
220-431
               

               
Cow position:
               
chr3:73589751-73589539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 60
               

               
Conread position:
               
221-379
               

               
Cow position:
               
chr3:22078096-22078253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
221-379
               

               
Cow position:
               
chr3:61024002-61023846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
221-394
               

               
Cow position:
               
chr3:22899712-22899540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
159, 49
               

               
Conread position:
               
221-413
               

               
Cow position:
               
chr3:18764122-18764314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
71, 58
               

               
Conread position:
               
222-398
               

               
Cow position:
               
chr3:45743932-45744103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
222-410
               

               
Cow position:
               
chr3:76168610-76168427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
223-402
               

               
Cow position:
               
chr3:69849270-69849099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
163, 56
               

               
Conread position:
               
224-382
               

               
Cow position:
               
chr3:51543458-51543617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
224-388
               

               
Cow position:
               
chr3:44218789-44218952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
224-390
               

               
Cow position:
               
chr3:58562717-58562887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
224-392
               

               
Cow position:
               
chr3:17531714-17531548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
224-396
               

               
Cow position:
               
chr3:20066126-20065955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
224-402
               

               
Cow position:
               
chr3:14211959-14211790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
224-408
               

               
Cow position:
               
chr3:23640367-23640544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
150, 55
               

               
Conread position:
               
224-426
               

               
Cow position:
               
chr3:74127485-74127280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
73, 55
               

               
Conread position:
               
225-379
               

               
Cow position:
               
chr3:19641083-19641240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 55
               

               
Conread position:
               
225-382
               

               
Cow position:
               
chr3:12178081-12178239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
225-390
               

               
Cow position:
               
chr3:75907936-75908098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
225-399
               

               
Cow position:
               
chr3:61171344-61171169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
225-415
               

               
Cow position:
               
chr3:81616428-81616235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
172, 47
               

               
Conread position:
               
226-370
               

               
Cow position:
               
chr3:62370080-62370223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
226-379
               

               
Cow position:
               
chr3:67407340-67407192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
226-383
               

               
Cow position:
               
chr3:6547449-6547605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
227-382
               

               
Cow position:
               
chr3:17304944-17304792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
227-387
               

               
Cow position:
               
chr3:58010804-58010651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
228-414
               

               
Cow position:
               
chr3:60371010-60371192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
229-379
               

               
Cow position:
               
chr3:35005563-35005406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
229-405
               

               
Cow position:
               
chr3:12621349-12621174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
230-386
               

               
Cow position:
               
chr3:66354708-66354863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 96
               

               
Conread position:
               
230-387
               

               
Cow position:
               
chr3:78115563-78115407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
230-399
               

               
Cow position:
               
chr3:20888633-20888466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
230-430
               

               
Cow position:
               
chr3:58497687-58497889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
148, 49
               

               
Conread position:
               
232-395
               

               
Cow position:
               
chr3:3275631-3275786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
232-420
               

               
Cow position:
               
chr3:29943888-29944074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
234-413
               

               
Cow position:
               
chr3:18301537-18301364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
237-389
               

               
Cow position:
               
chr3:35585868-35586019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
237-408
               

               
Cow position:
               
chr3:7408472-7408642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
242-382
               

               
Cow position:
               
chr3:72626704-72626564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
248-395
               

               
Cow position:
               
chr3:70632192-70632339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
248-407
               

               
Cow position:
               
chr3:42933528-42933684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
248-431
               

               
Cow position:
               
chr3:79316736-79316917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
249-401
               

               
Cow position:
               
chr3:26218470-26218311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
249-407
               

               
Cow position:
               
chr3:79877075-79877234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
254-390
               

               
Cow position:
               
chr3:59997804-59997940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
255-400
               

               
Cow position:
               
chr3:41746451-41746304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 105
               

               
Conread position:
               
257-401
               

               
Cow position:
               
chr3:66563839-66563982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
265-379
               

               
Cow position:
               
chr3:3887575-3887464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
269-416
               

               
Cow position:
               
chr3:18177335-18177480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
272-381
               

               
Cow position:
               
chr3:75975011-75974901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
272-402
               

               
Cow position:
               
chr3:33440-33307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 14
               

               
Conread position:
               
275-390
               

               
Cow position:
               
chr3:29385940-29386055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
279-388
               

               
Cow position:
               
chr3:10453919-10454028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-416
               

               
Cow position:
               
chr3:52635798-52635935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
301-429
               

               
Cow position:
               
chr3:75975983-75976113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
70, 0
               
Show alignments to all cow chromosomes.