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Cow genome map

           
Conread name:
           
rspc022_i7.y1
        

               
Conread position:
               
1-206
               

               
Cow position:
               
chr5:46509842-46510043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr5:34288445-34288647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr5:63865820-63865644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr5:36855227-36855035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chr5:21920398-21920205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr5:53145862-53146063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-135
               

               
Cow position:
               
chr5:60183823-60183692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-145
               

               
Cow position:
               
chr5:49440851-49440991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
4-158
               

               
Cow position:
               
chr5:54767888-54768042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr5:991484-991332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr5:18289151-18288995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr5:34300939-34300782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
4-161
               

               
Cow position:
               
chr5:34115673-34115516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr5:21964309-21964140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr5:24485414-24485577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr5:65883752-65883922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
4-174
               

               
Cow position:
               
chr5:41486717-41486890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr5:16206133-16206308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr5:35459274-35459445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr5:40109513-40109347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr5:51800952-51801126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chr5:50821803-50821621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr5:45397593-45397418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr5:46425835-46426011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr5:71579196-71579013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
108, 39
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr5:16509120-16508925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr5:55955928-55955740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr5:65967711-65967897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr5:72895706-72895525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr5:30949895-30950088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr5:43992344-43992150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr5:56820240-56820432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr5:9090003-9090197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr5:17644634-17644829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr5:44049722-44049529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr5:50723072-50722873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:3627132-3627330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:29979962-29980160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:30302915-30302721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:50600073-50599879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:17999472-17999670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:22242752-22242961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:32696802-32696988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:54713711-54713912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:63987425-63987622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:64758747-64758939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:72564784-72564586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
108, 134
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr5:5257268-5257473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 121
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr5:6045314-6045111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr5:20783640-20783448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr5:50533364-50533559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 159
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr5:51935210-51935006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr5:57265884-57266074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr5:74015962-74015763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
177, 153
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:1678418-1678222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
30, 147
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:6086540-6086739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:6503861-6504057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:6670173-6670375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:7044685-7044888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:7140086-7140282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:8024173-8024370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:8994545-8994743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:9859691-9859896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:12322784-12322978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:14420320-14420522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:15426559-15426348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:15598215-15598411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:16025440-16025638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:16185108-16184912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:18898996-18898806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:19470170-19470364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:21617478-21617278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:21828888-21828687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:22643206-22643395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
129, 28
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:26990416-26990216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:27403209-27403421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:28926160-28926365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:28927566-28927770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:30253761-30253564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:30487262-30487067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:31640445-31640250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:34562036-34561831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:34624979-34624791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:34638904-34638708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:35235689-35235886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
108, 20
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:35826622-35826413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
143, 47
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:37646523-37646728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:38833143-38832942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:40039748-40039948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:41165108-41164911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
167, 126
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:43474865-43474670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:45409343-45409149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:48009830-48010024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:50975922-50975708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:56070879-56070675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:56524194-56523996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:57575791-57575588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:58793587-58793792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:59082174-59082373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:60126393-60126196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:62826732-62826931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:64137276-64137074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:64823291-64823490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:65752880-65752679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
39, 159
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:65886988-65887192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
106, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:65941230-65941431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:67932446-67932639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr5:72150270-72150074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
41, 154
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr5:29828066-29827875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr5:45845671-45845874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr5:57074311-57074513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr5:62172432-62172240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr5:54060298-54060078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
5-152
               

               
Cow position:
               
chr5:56680270-56680121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr5:27411376-27411562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chr5:61576564-61576366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 8
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr5:14314547-14314346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
5-205
               

               
Cow position:
               
chr5:52165158-52165358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr5:4031970-4032166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr5:42777784-42777587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
114, 33
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr5:44446847-44447064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr5:47313493-47313296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 8
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr5:58144582-58144781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr5:62142695-62142493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
65, 86
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr5:44849704-44849911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
6-197
               

               
Cow position:
               
chr5:24996203-24996393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr5:17087002-17087206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr5:26467644-26467442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr5:55966862-55967060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
7-156
               

               
Cow position:
               
chr5:47721561-47721408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
7-206
               

               
Cow position:
               
chr5:38838034-38838234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
7-206
               

               
Cow position:
               
chr5:41532149-41532346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr5:12709906-12709708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr5:57935091-57935291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
180, 27
               

               
Conread position:
               
8-182
               

               
Cow position:
               
chr5:43110586-43110410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr5:41452649-41452837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
8-205
               

               
Cow position:
               
chr5:45472298-45472090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
8-206
               

               
Cow position:
               
chr5:8179200-8179002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
8-207
               

               
Cow position:
               
chr5:54404873-54405073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
9-129
               

               
Cow position:
               
chr5:54375491-54375610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr5:29212958-29212775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
9-207
               

               
Cow position:
               
chr5:31469566-31469762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
103, 23
               

               
Conread position:
               
9-207
               

               
Cow position:
               
chr5:52000238-52000041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
10-207
               

               
Cow position:
               
chr5:33661871-33661677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
11-195
               

               
Cow position:
               
chr5:66972445-66972257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
11-197
               

               
Cow position:
               
chr5:45225808-45225992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
34, 152
               

               
Conread position:
               
11-207
               

               
Cow position:
               
chr5:55176904-55176709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
13-169
               

               
Cow position:
               
chr5:35763288-35763135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
13-200
               

               
Cow position:
               
chr5:63964152-63964343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
13-207
               

               
Cow position:
               
chr5:4322421-4322233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
13-207
               

               
Cow position:
               
chr5:65601474-65601283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
13-211
               

               
Cow position:
               
chr5:30816729-30816534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
14-130
               

               
Cow position:
               
chr5:36038992-36039108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
14-197
               

               
Cow position:
               
chr5:72006842-72007020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
14-206
               

               
Cow position:
               
chr5:69099540-69099352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
14-207
               

               
Cow position:
               
chr5:4221001-4220803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
15-183
               

               
Cow position:
               
chr5:47696436-47696596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
15-204
               

               
Cow position:
               
chr5:2500174-2500363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
15-206
               

               
Cow position:
               
chr5:17028100-17027918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
15-207
               

               
Cow position:
               
chr5:53835723-53835537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
15-207
               

               
Cow position:
               
chr5:63185243-63185431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
16-205
               

               
Cow position:
               
chr5:59325821-59326004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
12, 122
               

               
Conread position:
               
16-207
               

               
Cow position:
               
chr5:32338952-32339153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
16-207
               

               
Cow position:
               
chr5:66257652-66257464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
16-208
               

               
Cow position:
               
chr5:31434274-31434087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
17-207
               

               
Cow position:
               
chr5:35145360-35145175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
17-207
               

               
Cow position:
               
chr5:45804066-45803883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
17-207
               

               
Cow position:
               
chr5:57706924-57706738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
102, 10
               

               
Conread position:
               
17-207
               

               
Cow position:
               
chr5:71454592-71454772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
18-196
               

               
Cow position:
               
chr5:6130360-6130186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
18-207
               

               
Cow position:
               
chr5:39094564-39094376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 147
               

               
Conread position:
               
18-207
               

               
Cow position:
               
chr5:42744792-42744616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
18-207
               

               
Cow position:
               
chr5:55821380-55821189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
19-156
               

               
Cow position:
               
chr5:44726319-44726456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-163
               

               
Cow position:
               
chr5:6683348-6683492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
19-180
               

               
Cow position:
               
chr5:25495341-25495500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
19-204
               

               
Cow position:
               
chr5:34167967-34167786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
19-207
               

               
Cow position:
               
chr5:29353127-29353307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
19-207
               

               
Cow position:
               
chr5:64139575-64139385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
20-182
               

               
Cow position:
               
chr5:9083343-9083183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
20-188
               

               
Cow position:
               
chr5:25231004-25231166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr5:26505397-26505583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr5:34441787-34441969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
21-207
               

               
Cow position:
               
chr5:4506951-4507138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
21-207
               

               
Cow position:
               
chr5:50637830-50637652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
22-167
               

               
Cow position:
               
chr5:64027003-64027149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
23-187
               

               
Cow position:
               
chr5:48143779-48143948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
23-207
               

               
Cow position:
               
chr5:20554743-20554927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
23-207
               

               
Cow position:
               
chr5:37646074-37645896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
23-207
               

               
Cow position:
               
chr5:49685268-49685458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
24-200
               

               
Cow position:
               
chr5:56433809-56433627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
24-204
               

               
Cow position:
               
chr5:41604630-41604438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 162
               

               
Conread position:
               
24-207
               

               
Cow position:
               
chr5:9894121-9894303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
24-207
               

               
Cow position:
               
chr5:24349109-24348934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 19
               

               
Conread position:
               
24-207
               

               
Cow position:
               
chr5:33414406-33414585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 134
               

               
Conread position:
               
24-207
               

               
Cow position:
               
chr5:64176119-64176298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
24-208
               

               
Cow position:
               
chr5:52040313-52040498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 109
               

               
Conread position:
               
25-135
               

               
Cow position:
               
chr5:7698005-7697896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
25-161
               

               
Cow position:
               
chr5:38647360-38647224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 123
               

               
Conread position:
               
25-187
               

               
Cow position:
               
chr5:12351791-12351947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
25-196
               

               
Cow position:
               
chr5:24616114-24616289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
25-207
               

               
Cow position:
               
chr5:58856104-58855926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
25-207
               

               
Cow position:
               
chr5:59297957-59298136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 64
               

               
Conread position:
               
26-193
               

               
Cow position:
               
chr5:46512763-46512930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-206
               

               
Cow position:
               
chr5:14550579-14550762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
26-206
               

               
Cow position:
               
chr5:65776382-65776562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr5:21944398-21944204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr5:28456402-28456588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr5:28459703-28459890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr5:34916136-34915964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr5:47704126-47704311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
26-207
               

               
Cow position:
               
chr5:55942395-55942575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 132
               

               
Conread position:
               
27-160
               

               
Cow position:
               
chr5:74643672-74643805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-204
               

               
Cow position:
               
chr5:29903520-29903697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
27-206
               

               
Cow position:
               
chr5:61840193-61840010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 143
               

               
Conread position:
               
27-207
               

               
Cow position:
               
chr5:359940-360124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 144
               

               
Conread position:
               
27-207
               

               
Cow position:
               
chr5:35209474-35209654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
27-207
               

               
Cow position:
               
chr5:37713898-37714082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
29-204
               

               
Cow position:
               
chr5:62026949-62027121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
29-207
               

               
Cow position:
               
chr5:56028530-56028708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
30-178
               

               
Cow position:
               
chr5:19278703-19278853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
30-207
               

               
Cow position:
               
chr5:21525167-21524987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
30-207
               

               
Cow position:
               
chr5:47601815-47601639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
30-207
               

               
Cow position:
               
chr5:56753724-56753548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
90, 117
               

               
Conread position:
               
31-194
               

               
Cow position:
               
chr5:30276692-30276529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
31-206
               

               
Cow position:
               
chr5:49559162-49558991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
31-207
               

               
Cow position:
               
chr5:11427241-11427419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
31-207
               

               
Cow position:
               
chr5:74610697-74610869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 61
               

               
Conread position:
               
33-162
               

               
Cow position:
               
chr5:19294495-19294622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
33-197
               

               
Cow position:
               
chr5:44028749-44028913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
33-201
               

               
Cow position:
               
chr5:43457526-43457691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
34-171
               

               
Cow position:
               
chr5:66581957-66581818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
34-200
               

               
Cow position:
               
chr5:74019778-74019942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
34-206
               

               
Cow position:
               
chr5:47316979-47317146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr5:18702217-18702390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr5:45706038-45705870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr5:54111913-54111741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr5:61600411-61600235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr5:72310697-72310537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
34-208
               

               
Cow position:
               
chr5:4797324-4797489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
35-182
               

               
Cow position:
               
chr5:37068882-37068739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
35-207
               

               
Cow position:
               
chr5:60520155-60519989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
36-168
               

               
Cow position:
               
chr5:25035252-25035384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 116
               

               
Conread position:
               
36-182
               

               
Cow position:
               
chr5:10248689-10248543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
36-197
               

               
Cow position:
               
chr5:57327787-57327625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
36-206
               

               
Cow position:
               
chr5:6987154-6986982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 81
               

               
Conread position:
               
36-222
               

               
Cow position:
               
chr5:62638902-62638713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 140
               

               
Conread position:
               
37-204
               

               
Cow position:
               
chr5:52668020-52667853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 149
               

               
Conread position:
               
37-205
               

               
Cow position:
               
chr5:57737093-57736939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
37-206
               

               
Cow position:
               
chr5:15722077-15722231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
37-206
               

               
Cow position:
               
chr5:56518221-56518386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
37-207
               

               
Cow position:
               
chr5:1027702-1027869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 107
               

               
Conread position:
               
37-207
               

               
Cow position:
               
chr5:57127002-57126835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
37-207
               

               
Cow position:
               
chr5:64523879-64524058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
38-203
               

               
Cow position:
               
chr5:65932940-65933105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 121
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr5:17063102-17063271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
101, 142
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr5:28324343-28324168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr5:45037009-45036844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr5:75828752-75828913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
38-208
               

               
Cow position:
               
chr5:57271277-57271443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
39-204
               

               
Cow position:
               
chr5:17768157-17768318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
41-126
               

               
Cow position:
               
chr5:62378776-62378691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
41-208
               

               
Cow position:
               
chr5:10261253-10261417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
42-207
               

               
Cow position:
               
chr5:71158277-71158441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
65, 48
               

               
Conread position:
               
43-162
               

               
Cow position:
               
chr5:7921417-7921536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
43-195
               

               
Cow position:
               
chr5:32956113-32956261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
43-207
               

               
Cow position:
               
chr5:16893790-16893953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
47-174
               

               
Cow position:
               
chr5:3204816-3204685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
47-197
               

               
Cow position:
               
chr5:56317276-56317127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
47-197
               

               
Cow position:
               
chr5:61875205-61875345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
47-207
               

               
Cow position:
               
chr5:9024287-9024444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
47-207
               

               
Cow position:
               
chr5:26377691-26377844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
47-207
               

               
Cow position:
               
chr5:63388773-63388617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
48-206
               

               
Cow position:
               
chr5:46122372-46122527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
53-206
               

               
Cow position:
               
chr5:27419756-27419897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
53-208
               

               
Cow position:
               
chr5:12672057-12672205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
53-208
               

               
Cow position:
               
chr5:46103967-46104114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
54-208
               

               
Cow position:
               
chr5:48178705-48178857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
55-208
               

               
Cow position:
               
chr5:37366872-37366719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
57-207
               

               
Cow position:
               
chr5:57576185-57576036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
59-207
               

               
Cow position:
               
chr5:44054068-44054215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
60-206
               

               
Cow position:
               
chr5:50870512-50870365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
60-207
               

               
Cow position:
               
chr5:37814588-37814446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
60-207
               

               
Cow position:
               
chr5:46322844-46322989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
60-207
               

               
Cow position:
               
chr5:63917444-63917588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
70-204
               

               
Cow position:
               
chr5:66297194-66297064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
70-208
               

               
Cow position:
               
chr5:20407711-20407845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
73-197
               

               
Cow position:
               
chr5:33937174-33937052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 38
               
Show alignments to all cow chromosomes.