Cow genome map

Conread name: rspc030_i12.y1

Conread position: 4-501
Cow position: chr12:30170297-30170802 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 6

Conread position: 5-392
Cow position: chr12:18944015-18943626 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 276
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 43, 115

Conread position: 5-437
Cow position: chr12:1889953-1889501 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 284
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 43, 177

Conread position: 5-445
Cow position: chr12:5632239-5631799 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 173

Conread position: 5-483
Cow position: chr12:37770506-37770998 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 191

Conread position: 5-498
Cow position: chr12:15089126-15089663 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 413

Conread position: 5-501
Cow position: chr12:9143027-9143534 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 5-501
Cow position: chr12:17079896-17080416 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 150

Conread position: 5-501
Cow position: chr12:18421291-18420771 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 96

Conread position: 5-501
Cow position: chr12:25561006-25561516 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 81

Conread position: 5-501
Cow position: chr12:30578824-30578307 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 333
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 31, 96

Conread position: 5-501
Cow position: chr12:42602601-42602087 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 340
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 36, 88

Conread position: 6-500
Cow position: chr12:15121978-15122474 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 353
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 43, 88

Conread position: 7-377
Cow position: chr12:39486070-39486441 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 13

Conread position: 7-501
Cow position: chr12:18123324-18123816 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 94

Conread position: 8-498
Cow position: chr12:18577486-18577974 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 10

Conread position: 35-501
Cow position: chr12:30745384-30745866 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 16

Conread position: 40-435
Cow position: chr12:42685278-42684870 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 181
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 149, 215

Conread position: 44-501
Cow position: chr12:9229806-9229366 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 137

Conread position: 49-480
Cow position: chr12:11056559-11057000 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 61

Conread position: 59-427
Cow position: chr12:33457843-33458214 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 251
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 195, 14

Conread position: 60-388
Cow position: chr12:15530759-15531086 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 228
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 57, 37

Conread position: 60-390
Cow position: chr12:45820663-45820336 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 72

Conread position: 60-501
Cow position: chr12:41083758-41084195 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 44

Conread position: 61-439
Cow position: chr12:37994030-37993655 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 258
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 56, 36

Conread position: 64-501
Cow position: chr12:18518369-18518822 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 46

Conread position: 64-501
Cow position: chr12:30590475-30590919 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 311
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 56, 33

Conread position: 68-501
Cow position: chr12:16605944-16605519 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 310
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 50, 42

Conread position: 69-502
Cow position: chr12:17031324-17031759 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 41

Conread position: 71-435
Cow position: chr12:41159302-41159662 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 26

Conread position: 73-335
Cow position: chr12:26317166-26317440 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 187
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 90, 37

Conread position: 73-374
Cow position: chr12:6164322-6164008 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 38

Conread position: 73-499
Cow position: chr12:5714336-5714766 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 24

Conread position: 81-427
Cow position: chr12:32169250-32169607 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 248
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 30

Conread position: 82-427
Cow position: chr12:19502704-19502361 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 161

Conread position: 87-476
Cow position: chr12:43942200-43942597 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 278
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 24

Conread position: 89-437
Cow position: chr12:29780179-29779837 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 224
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 133, 83

Conread position: 93-501
Cow position: chr12:39465305-39465715 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 97-430
Cow position: chr12:25177863-25177528 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 13

Conread position: 115-543
Cow position: chr12:5635699-5635259 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 70

Conread position: 122-446
Cow position: chr12:29770817-29770495 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 113, 43

Conread position: 123-501
Cow position: chr12:34161174-34161553 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 254
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 49

Conread position: 138-435
Cow position: chr12:27037677-27037375 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 97

Conread position: 145-499
Cow position: chr12:33129043-33129402 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 252
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 149, 107

Conread position: 167-501
Cow position: chr12:17879505-17879155 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 242
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 76, 31

Conread position: 209-501
Cow position: chr12:37170104-37169799 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 71

Conread position: 219-501
Cow position: chr12:24032350-24032638 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 139

Conread position: 224-436
Cow position: chr12:46120976-46120756 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 226-501
Cow position: chr12:7902944-7902655 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 31

Conread position: 257-446
Cow position: chr12:19274495-19274314 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 35

Conread position: 258-498
Cow position: chr12:18583101-18582852 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 111

Conread position: 258-508
Cow position: chr12:3371652-3371391 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 107

Conread position: 265-468
Cow position: chr12:37514384-37514168 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 23, 93

Conread position: 272-501
Cow position: chr12:33948818-33949050 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 26

Conread position: 285-500
Cow position: chr12:3615927-3616132 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 287-495
Cow position: chr12:17252271-17252059 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 114, 62

Conread position: 291-508
Cow position: chr12:5839725-5839504 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 107, 103

Conread position: 317-527
Cow position: chr12:14986706-14986924 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 105

Show alignments to all cow chromosomes.