Cow genome map
Conread name: | rspc030_i12.y1 |
Conread position: | 4-501 |
Cow position: | chr12:30170297-30170802 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 6 |
Conread position: | 5-392 |
Cow position: | chr12:18944015-18943626 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 276 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 43, 115 |
Conread position: | 5-437 |
Cow position: | chr12:1889953-1889501 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 284 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 43, 177 |
Conread position: | 5-445 |
Cow position: | chr12:5632239-5631799 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 173 |
Conread position: | 5-483 |
Cow position: | chr12:37770506-37770998 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 191 |
Conread position: | 5-498 |
Cow position: | chr12:15089126-15089663 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 413 |
Conread position: | 5-501 |
Cow position: | chr12:9143027-9143534 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 110 |
Conread position: | 5-501 |
Cow position: | chr12:17079896-17080416 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 150 |
Conread position: | 5-501 |
Cow position: | chr12:18421291-18420771 (view UCSC Genome Browser custom track) |
Alignm length: | 525 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 96 |
Conread position: | 5-501 |
Cow position: | chr12:25561006-25561516 (view UCSC Genome Browser custom track) |
Alignm length: | 516 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 81 |
Conread position: | 5-501 |
Cow position: | chr12:30578824-30578307 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 333 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 31, 96 |
Conread position: | 5-501 |
Cow position: | chr12:42602601-42602087 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 340 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 36, 88 |
Conread position: | 6-500 |
Cow position: | chr12:15121978-15122474 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 353 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 43, 88 |
Conread position: | 7-377 |
Cow position: | chr12:39486070-39486441 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 13 |
Conread position: | 7-501 |
Cow position: | chr12:18123324-18123816 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 94 |
Conread position: | 8-498 |
Cow position: | chr12:18577486-18577974 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 10 |
Conread position: | 35-501 |
Cow position: | chr12:30745384-30745866 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 16 |
Conread position: | 40-435 |
Cow position: | chr12:42685278-42684870 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 181 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 149, 215 |
Conread position: | 44-501 |
Cow position: | chr12:9229806-9229366 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 137 |
Conread position: | 49-480 |
Cow position: | chr12:11056559-11057000 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 61 |
Conread position: | 59-427 |
Cow position: | chr12:33457843-33458214 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 251 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 195, 14 |
Conread position: | 60-388 |
Cow position: | chr12:15530759-15531086 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 228 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 57, 37 |
Conread position: | 60-390 |
Cow position: | chr12:45820663-45820336 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 232, 72 |
Conread position: | 60-501 |
Cow position: | chr12:41083758-41084195 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 44 |
Conread position: | 61-439 |
Cow position: | chr12:37994030-37993655 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 258 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 56, 36 |
Conread position: | 64-501 |
Cow position: | chr12:18518369-18518822 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 46 |
Conread position: | 64-501 |
Cow position: | chr12:30590475-30590919 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 311 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 56, 33 |
Conread position: | 68-501 |
Cow position: | chr12:16605944-16605519 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 310 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 50, 42 |
Conread position: | 69-502 |
Cow position: | chr12:17031324-17031759 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 41 |
Conread position: | 71-435 |
Cow position: | chr12:41159302-41159662 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 253 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 46, 26 |
Conread position: | 73-335 |
Cow position: | chr12:26317166-26317440 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 187 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 90, 37 |
Conread position: | 73-374 |
Cow position: | chr12:6164322-6164008 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 38 |
Conread position: | 73-499 |
Cow position: | chr12:5714336-5714766 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 181, 24 |
Conread position: | 81-427 |
Cow position: | chr12:32169250-32169607 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 248 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 14, 30 |
Conread position: | 82-427 |
Cow position: | chr12:19502704-19502361 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 161 |
Conread position: | 87-476 |
Cow position: | chr12:43942200-43942597 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 278 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 12, 24 |
Conread position: | 89-437 |
Cow position: | chr12:29780179-29779837 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 224 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 133, 83 |
Conread position: | 93-501 |
Cow position: | chr12:39465305-39465715 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 17 |
Conread position: | 97-430 |
Cow position: | chr12:25177863-25177528 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 239 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 21, 13 |
Conread position: | 115-543 |
Cow position: | chr12:5635699-5635259 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 70 |
Conread position: | 122-446 |
Cow position: | chr12:29770817-29770495 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 238 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 113, 43 |
Conread position: | 123-501 |
Cow position: | chr12:34161174-34161553 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 254 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 26, 49 |
Conread position: | 138-435 |
Cow position: | chr12:27037677-27037375 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 97 |
Conread position: | 145-499 |
Cow position: | chr12:33129043-33129402 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 252 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 149, 107 |
Conread position: | 167-501 |
Cow position: | chr12:17879505-17879155 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 242 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 76, 31 |
Conread position: | 209-501 |
Cow position: | chr12:37170104-37169799 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 217 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 45, 71 |
Conread position: | 219-501 |
Cow position: | chr12:24032350-24032638 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 197 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 69, 139 |
Conread position: | 224-436 |
Cow position: | chr12:46120976-46120756 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 150 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 226-501 |
Cow position: | chr12:7902944-7902655 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 197 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 14, 31 |
Conread position: | 257-446 |
Cow position: | chr12:19274495-19274314 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 136 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 87, 35 |
Conread position: | 258-498 |
Cow position: | chr12:18583101-18582852 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 181 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 31, 111 |
Conread position: | 258-508 |
Cow position: | chr12:3371652-3371391 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 182 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 31, 107 |
Conread position: | 265-468 |
Cow position: | chr12:37514384-37514168 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 156 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 23, 93 |
Conread position: | 272-501 |
Cow position: | chr12:33948818-33949050 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 164 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 70, 26 |
Conread position: | 285-500 |
Cow position: | chr12:3615927-3616132 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 147 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 287-495 |
Cow position: | chr12:17252271-17252059 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 150 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 114, 62 |
Conread position: | 291-508 |
Cow position: | chr12:5839725-5839504 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 156 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 107, 103 |
Conread position: | 317-527 |
Cow position: | chr12:14986706-14986924 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 151 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 120, 105 |
Show alignments to all cow chromosomes.