Cow genome map

Conread name: rspc030_i12.y1

Conread position: 2-501
Cow position: chr13:13321094-13320595 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 7

Conread position: 4-501
Cow position: chr13:17291821-17292330 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 94

Conread position: 4-543
Cow position: chr13:38283671-38284212 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 188

Conread position: 5-337
Cow position: chr13:12682231-12682576 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 107

Conread position: 5-385
Cow position: chr13:46324477-46324867 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 274
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 43, 62

Conread position: 5-403
Cow position: chr13:17622596-17622192 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 109

Conread position: 5-427
Cow position: chr13:40943555-40943124 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 5-434
Cow position: chr13:51941041-51940607 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 302
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 39, 96

Conread position: 5-435
Cow position: chr13:43762483-43762041 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 299
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 26, 100

Conread position: 5-437
Cow position: chr13:10928681-10929118 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 5-437
Cow position: chr13:20683811-20684258 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 105

Conread position: 5-439
Cow position: chr13:31814175-31813743 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 74

Conread position: 5-480
Cow position: chr13:20666076-20666567 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 5-485
Cow position: chr13:52057850-52057372 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 129

Conread position: 5-499
Cow position: chr13:15958929-15958422 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 340
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 209, 160

Conread position: 5-499
Cow position: chr13:21235377-21235868 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 49

Conread position: 5-501
Cow position: chr13:17820949-17821460 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 11

Conread position: 5-501
Cow position: chr13:19882727-19883236 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 93

Conread position: 5-501
Cow position: chr13:20820526-20821039 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 99

Conread position: 5-501
Cow position: chr13:41807078-41806574 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 17

Conread position: 5-501
Cow position: chr13:56686743-56686241 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 113

Conread position: 5-501
Cow position: chr13:61976653-61977160 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 108

Conread position: 6-501
Cow position: chr13:22085449-22085934 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 92

Conread position: 8-435
Cow position: chr13:21176014-21176447 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 103

Conread position: 8-495
Cow position: chr13:15288623-15289115 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 25

Conread position: 9-296
Cow position: chr13:52010278-52010563 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 92

Conread position: 11-501
Cow position: chr13:13089329-13088830 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 90

Conread position: 17-501
Cow position: chr13:25817813-25817327 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 147

Conread position: 18-501
Cow position: chr13:54702485-54701979 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 31

Conread position: 40-500
Cow position: chr13:17021447-17021927 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 70

Conread position: 51-500
Cow position: chr13:19393547-19393095 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 23

Conread position: 51-501
Cow position: chr13:15234172-15233744 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 46

Conread position: 52-501
Cow position: chr13:18852334-18851886 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 315
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 67, 27

Conread position: 52-501
Cow position: chr13:21287829-21288287 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 58

Conread position: 59-501
Cow position: chr13:20784842-20784392 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 48

Conread position: 60-501
Cow position: chr13:24586299-24585846 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 9

Conread position: 63-543
Cow position: chr13:24715487-24714996 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 330
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 156, 34

Conread position: 64-439
Cow position: chr13:35660002-35659629 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 64-481
Cow position: chr13:23479278-23478846 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 64-501
Cow position: chr13:42200867-42200418 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 33

Conread position: 64-508
Cow position: chr13:20839818-20839371 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 300
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 21, 48

Conread position: 65-437
Cow position: chr13:11460871-11460503 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 32

Conread position: 65-490
Cow position: chr13:13501374-13501802 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 50

Conread position: 67-435
Cow position: chr13:23856461-23856083 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 62

Conread position: 70-392
Cow position: chr13:17114137-17114464 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 40

Conread position: 71-353
Cow position: chr13:52922330-52922049 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 39

Conread position: 71-359
Cow position: chr13:30693943-30693662 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 39

Conread position: 71-379
Cow position: chr13:24376732-24376421 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 73-420
Cow position: chr13:13176889-13176537 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 45, 37

Conread position: 73-499
Cow position: chr13:20880686-20881121 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 290
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 26, 38

Conread position: 73-501
Cow position: chr13:14063288-14063723 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 28

Conread position: 73-501
Cow position: chr13:55673965-55674412 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 37

Conread position: 74-407
Cow position: chr13:8524382-8524718 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 37

Conread position: 82-501
Cow position: chr13:21241861-21242278 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 85-501
Cow position: chr13:17745470-17745056 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 78

Conread position: 86-446
Cow position: chr13:55315962-55316334 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 71

Conread position: 87-501
Cow position: chr13:36877298-36876863 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 292
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 83, 232

Conread position: 90-437
Cow position: chr13:20679569-20679209 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 253
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 67

Conread position: 92-499
Cow position: chr13:15257153-15257567 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 292
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 20, 129

Conread position: 92-501
Cow position: chr13:5263065-5263481 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 277
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 26, 18

Conread position: 94-446
Cow position: chr13:18172559-18172197 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 16

Conread position: 96-444
Cow position: chr13:37804096-37803754 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 14

Conread position: 100-501
Cow position: chr13:49022651-49023068 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 288
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 8, 157

Conread position: 107-392
Cow position: chr13:9593714-9593420 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 11, 50

Conread position: 107-429
Cow position: chr13:15528821-15529159 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 132-501
Cow position: chr13:52055414-52055795 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 246
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 37

Conread position: 136-501
Cow position: chr13:19188481-19188112 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 259
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 27, 39

Conread position: 136-537
Cow position: chr13:5758168-5758568 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 274
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 119, 36

Conread position: 143-392
Cow position: chr13:17966032-17966294 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 219

Conread position: 146-501
Cow position: chr13:20473520-20473877 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 77

Conread position: 148-427
Cow position: chr13:15903182-15902904 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 155, 13

Conread position: 149-501
Cow position: chr13:54583046-54582672 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 262
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 7, 242

Conread position: 157-501
Cow position: chr13:17568940-17569299 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 55, 7

Conread position: 160-501
Cow position: chr13:15195047-15195403 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 240
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 62, 207

Conread position: 168-446
Cow position: chr13:18696991-18696702 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 49

Conread position: 170-501
Cow position: chr13:5671445-5671788 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 232
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 87, 41

Conread position: 171-501
Cow position: chr13:8374626-8374963 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 240
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 86, 190

Conread position: 172-501
Cow position: chr13:18058104-18058449 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 82, 21

Conread position: 174-437
Cow position: chr13:11381579-11381853 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 89, 217

Conread position: 178-446
Cow position: chr13:51115889-51116162 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 110, 65

Conread position: 180-502
Cow position: chr13:20288466-20288135 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 61, 13

Conread position: 188-499
Cow position: chr13:58763503-58763809 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 206
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 151, 88

Conread position: 190-501
Cow position: chr13:14576334-14576013 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 211
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 92

Conread position: 198-495
Cow position: chr13:15194613-15194917 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 56, 165

Conread position: 210-503
Cow position: chr13:20155107-20154801 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 153

Conread position: 214-500
Cow position: chr13:12974905-12974614 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 40, 16

Conread position: 214-501
Cow position: chr13:7265022-7265308 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 91, 138

Conread position: 214-501
Cow position: chr13:46329501-46329805 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 40, 148

Conread position: 226-447
Cow position: chr13:47022450-47022226 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 172

Conread position: 240-501
Cow position: chr13:21170602-21170326 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 251-501
Cow position: chr13:20314557-20314827 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 25, 108

Conread position: 260-501
Cow position: chr13:17089470-17089715 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 211

Conread position: 264-501
Cow position: chr13:21171523-21171774 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 268-501
Cow position: chr13:17611505-17611753 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 24, 134

Conread position: 268-501
Cow position: chr13:20217350-20217600 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 286-501
Cow position: chr13:57985918-57986134 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 10

Conread position: 289-501
Cow position: chr13:35557093-35557313 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 150, 0

Conread position: 289-501
Cow position: chr13:56535473-56535265 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 62

Conread position: 291-499
Cow position: chr13:14645067-14644853 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 67, 58

Conread position: 291-501
Cow position: chr13:52477633-52477847 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 56

Conread position: 298-501
Cow position: chr13:55494517-55494721 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 103, 96

Conread position: 306-500
Cow position: chr13:8450331-8450132 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 86, 90

Conread position: 325-501
Cow position: chr13:21277485-21277659 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 25

Conread position: 327-501
Cow position: chr13:52913853-52913674 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 26

Show alignments to all cow chromosomes.