Cow genome map

Conread name: rspc030_i12.y1

Conread position: 5-386
Cow position: chr17:38614674-38615065 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 105

Conread position: 5-436
Cow position: chr17:39735900-39736329 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 289
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 39, 96

Conread position: 5-446
Cow position: chr17:18201491-18201921 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 296
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 107

Conread position: 5-446
Cow position: chr17:25796623-25796174 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 398

Conread position: 5-453
Cow position: chr17:29157144-29157588 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 310
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 43, 100

Conread position: 5-493
Cow position: chr17:5000863-5000380 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 99

Conread position: 5-495
Cow position: chr17:4601829-4601338 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 82

Conread position: 5-499
Cow position: chr17:24883849-24883343 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 19

Conread position: 5-499
Cow position: chr17:36331248-36330740 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 125

Conread position: 5-501
Cow position: chr17:11216166-11215664 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 344
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 49, 106

Conread position: 5-501
Cow position: chr17:13922192-13922711 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 49

Conread position: 5-501
Cow position: chr17:20022803-20022285 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 109

Conread position: 5-501
Cow position: chr17:20033199-20032679 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 24

Conread position: 5-501
Cow position: chr17:29083920-29084396 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 334
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 44, 97

Conread position: 5-501
Cow position: chr17:32989207-32989702 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 105

Conread position: 5-501
Cow position: chr17:32993899-32993398 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 105

Conread position: 5-501
Cow position: chr17:33288940-33288429 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 159

Conread position: 5-501
Cow position: chr17:33934032-33933519 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 352
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 36, 168

Conread position: 5-501
Cow position: chr17:40771542-40772059 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 111

Conread position: 5-501
Cow position: chr17:43717594-43717111 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 348
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 43, 89

Conread position: 5-504
Cow position: chr17:28285305-28284804 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 341
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 146, 43

Conread position: 5-537
Cow position: chr17:25900913-25901473 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 98

Conread position: 5-539
Cow position: chr17:30529822-30529279 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 130

Conread position: 5-541
Cow position: chr17:13940605-13940049 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 106

Conread position: 6-402
Cow position: chr17:19891332-19891744 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 279
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 25, 106

Conread position: 6-447
Cow position: chr17:24823980-24824411 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 73

Conread position: 6-475
Cow position: chr17:923595-924065 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 95

Conread position: 6-495
Cow position: chr17:20848251-20848747 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 341
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 13

Conread position: 6-501
Cow position: chr17:24973665-24974172 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 185

Conread position: 7-386
Cow position: chr17:25542096-25541712 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 106

Conread position: 7-439
Cow position: chr17:18109370-18108931 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 157

Conread position: 7-439
Cow position: chr17:20090902-20090478 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 104

Conread position: 8-397
Cow position: chr17:40421386-40421787 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 93

Conread position: 8-501
Cow position: chr17:21973414-21972898 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 339
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 40, 93

Conread position: 10-437
Cow position: chr17:32138678-32138268 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 101

Conread position: 11-408
Cow position: chr17:12929823-12929404 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 276
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 33, 404

Conread position: 25-421
Cow position: chr17:3503312-3503721 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 294
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 23, 147

Conread position: 30-495
Cow position: chr17:21115202-21114732 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 18

Conread position: 40-501
Cow position: chr17:26818699-26818243 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 57

Conread position: 46-446
Cow position: chr17:11664829-11664419 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 51

Conread position: 54-536
Cow position: chr17:32419352-32418855 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 57

Conread position: 59-500
Cow position: chr17:32472019-32471560 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 38

Conread position: 60-501
Cow position: chr17:6423534-6423983 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 37

Conread position: 60-505
Cow position: chr17:5423298-5422845 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 37

Conread position: 64-435
Cow position: chr17:22806757-22806389 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 258
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 54, 20

Conread position: 71-435
Cow position: chr17:21739100-21738720 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 256
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 39

Conread position: 71-495
Cow position: chr17:24587402-24587846 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 71-499
Cow position: chr17:12325962-12325543 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 86

Conread position: 71-500
Cow position: chr17:24004179-24004601 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 296
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 219, 11

Conread position: 71-500
Cow position: chr17:24787237-24786797 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 71-501
Cow position: chr17:25128565-25128125 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 39

Conread position: 72-499
Cow position: chr17:33792967-33793379 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 300
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 45, 38

Conread position: 73-393
Cow position: chr17:11172829-11172503 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 224
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 182, 84

Conread position: 74-395
Cow position: chr17:4225704-4225385 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 181, 100

Conread position: 78-396
Cow position: chr17:38646859-38647175 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 235
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 40, 19

Conread position: 81-501
Cow position: chr17:27429372-27429785 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 29

Conread position: 82-450
Cow position: chr17:41892276-41891894 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 20, 140

Conread position: 84-501
Cow position: chr17:12447601-12447173 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 289
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 185, 26

Conread position: 92-501
Cow position: chr17:33275941-33275530 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 268
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 89

Conread position: 92-531
Cow position: chr17:20072270-20071839 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 302
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 24, 18

Conread position: 97-505
Cow position: chr17:12536658-12536241 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 13

Conread position: 103-500
Cow position: chr17:1063005-1063396 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 277
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 15, 7

Conread position: 104-501
Cow position: chr17:908562-908968 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 69

Conread position: 108-501
Cow position: chr17:3577358-3577756 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 131

Conread position: 115-435
Cow position: chr17:20990366-20990036 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 135, 55

Conread position: 115-436
Cow position: chr17:32273856-32273533 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 136, 41

Conread position: 115-495
Cow position: chr17:1634654-1634270 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 272
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 175, 22

Conread position: 115-501
Cow position: chr17:25611921-25612316 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 266
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 148, 57

Conread position: 120-538
Cow position: chr17:12306563-12306134 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 261
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 92, 279

Conread position: 123-437
Cow position: chr17:4121886-4121574 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 219
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 165, 49

Conread position: 123-443
Cow position: chr17:4106150-4105832 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 169, 49

Conread position: 135-501
Cow position: chr17:3467617-3467980 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 253
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 216, 39

Conread position: 136-407
Cow position: chr17:4967959-4968238 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 116, 0

Conread position: 136-501
Cow position: chr17:31037531-31037148 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 107, 36

Conread position: 140-489
Cow position: chr17:6328961-6329329 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 247
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 81, 197

Conread position: 156-396
Cow position: chr17:40673251-40673484 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 65, 101

Conread position: 157-501
Cow position: chr17:30728387-30728736 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 247
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 27, 63

Conread position: 160-501
Cow position: chr17:6318988-6318639 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 247
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 131, 80

Conread position: 174-501
Cow position: chr17:1040629-1040957 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 129

Conread position: 176-502
Cow position: chr17:23563904-23563582 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 221
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 74, 26

Conread position: 180-441
Cow position: chr17:21758257-21757983 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 266

Conread position: 180-501
Cow position: chr17:25616148-25616474 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 74, 103

Conread position: 189-446
Cow position: chr17:21325231-21325497 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 58, 91

Conread position: 192-435
Cow position: chr17:15340851-15340598 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 192-500
Cow position: chr17:11912596-11912277 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 94, 59

Conread position: 209-420
Cow position: chr17:11368932-11368711 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 152

Conread position: 216-501
Cow position: chr17:12511050-12510756 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 200
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 20, 170

Conread position: 223-501
Cow position: chr17:34791134-34790836 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 31, 183

Conread position: 224-501
Cow position: chr17:9824602-9824896 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 226-500
Cow position: chr17:1025885-1025606 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 83

Conread position: 238-501
Cow position: chr17:25511192-25511471 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 190
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 148

Conread position: 240-501
Cow position: chr17:22051638-22051362 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 9

Conread position: 244-501
Cow position: chr17:21039521-21039785 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 13

Conread position: 245-492
Cow position: chr17:40638908-40639167 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 108

Conread position: 245-501
Cow position: chr17:5372571-5372303 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 47, 113

Conread position: 245-501
Cow position: chr17:25800924-25800655 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 156

Conread position: 245-538
Cow position: chr17:33155197-33154889 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 94

Conread position: 264-508
Cow position: chr17:12959082-12959338 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 93

Conread position: 270-501
Cow position: chr17:9932319-9932082 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 132

Conread position: 285-501
Cow position: chr17:42150395-42150617 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 155, 0

Conread position: 286-499
Cow position: chr17:43315281-43315063 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 155, 52

Conread position: 287-507
Cow position: chr17:26575222-26574987 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 11

Conread position: 299-541
Cow position: chr17:7959198-7959444 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 96

Show alignments to all cow chromosomes.