Cow genome map
| Conread name: | rspc030_i12.y1 |
| Conread position: | 5-378 |
| Cow position: | chr18:33407263-33407640 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 49 |
| Conread position: | 5-386 |
| Cow position: | chr18:55552606-55552998 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 5-402 |
| Cow position: | chr18:5486892-5487289 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 5-435 |
| Cow position: | chr18:37023915-37023470 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 97 |
| Conread position: | 5-435 |
| Cow position: | chr18:50082595-50082177 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 5-436 |
| Cow position: | chr18:12241916-12242355 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 125 |
| Conread position: | 5-446 |
| Cow position: | chr18:38686737-38687169 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 5-453 |
| Cow position: | chr18:29058851-29058405 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 5-492 |
| Cow position: | chr18:29356996-29356487 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 5-495 |
| Cow position: | chr18:9974683-9974181 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 5-499 |
| Cow position: | chr18:20641839-20641348 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 37 |
| Conread position: | 5-499 |
| Cow position: | chr18:44262259-44262776 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 5-500 |
| Cow position: | chr18:10954122-10954618 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 5-501 |
| Cow position: | chr18:10575753-10576258 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 5-501 |
| Cow position: | chr18:12118204-12117698 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 224 |
| Conread position: | 5-501 |
| Cow position: | chr18:14586835-14586324 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 5-501 |
| Cow position: | chr18:20125947-20126447 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 92 |
| Conread position: | 5-539 |
| Cow position: | chr18:55505045-55505596 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 5-543 |
| Cow position: | chr18:50637819-50637293 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 6-392 |
| Cow position: | chr18:30248486-30248102 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 105 |
| Conread position: | 6-439 |
| Cow position: | chr18:4540230-4539798 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 6-495 |
| Cow position: | chr18:11779307-11779802 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 343 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 6-500 |
| Cow position: | chr18:22790427-22789936 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 7-464 |
| Cow position: | chr18:51443785-51443332 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 314 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 7-480 |
| Cow position: | chr18:47511637-47512133 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 7-493 |
| Cow position: | chr18:28658265-28657768 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 51 |
| Conread position: | 8-493 |
| Cow position: | chr18:7950757-7951266 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 326 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 8-499 |
| Cow position: | chr18:7964875-7965385 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 11-500 |
| Cow position: | chr18:11867000-11867492 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 90 |
| Conread position: | 17-501 |
| Cow position: | chr18:49100717-49100230 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 151 |
| Conread position: | 19-501 |
| Cow position: | chr18:51406237-51405762 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 23-432 |
| Cow position: | chr18:44802224-44801812 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 25-501 |
| Cow position: | chr18:9365576-9366077 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 36-435 |
| Cow position: | chr18:56183615-56184015 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 39-495 |
| Cow position: | chr18:30341495-30341033 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 40-435 |
| Cow position: | chr18:19273419-19273016 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 24 |
| Conread position: | 45-501 |
| Cow position: | chr18:4884830-4884364 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 45-501 |
| Cow position: | chr18:6881653-6881203 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 60-499 |
| Cow position: | chr18:33158654-33159096 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 61-392 |
| Cow position: | chr18:30794132-30794463 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 61-501 |
| Cow position: | chr18:5578003-5578450 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 62-430 |
| Cow position: | chr18:11684692-11685057 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 64-445 |
| Cow position: | chr18:31082616-31082259 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 64-501 |
| Cow position: | chr18:10904550-10905002 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 71-420 |
| Cow position: | chr18:28924121-28923782 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 71-501 |
| Cow position: | chr18:10891238-10891666 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 74-392 |
| Cow position: | chr18:25206478-25206151 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 78-437 |
| Cow position: | chr18:20127384-20127024 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 79-541 |
| Cow position: | chr18:4668775-4668320 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 111 |
| Conread position: | 86-495 |
| Cow position: | chr18:15614122-15613715 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 89-501 |
| Cow position: | chr18:46048490-46048909 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 93-437 |
| Cow position: | chr18:21768360-21768696 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 100 |
| Conread position: | 102-501 |
| Cow position: | chr18:42431867-42431459 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 103-501 |
| Cow position: | chr18:12023890-12023484 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 104-495 |
| Cow position: | chr18:42479848-42479431 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 117-435 |
| Cow position: | chr18:33007813-33008146 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 126, 275 |
| Conread position: | 123-453 |
| Cow position: | chr18:33896661-33896320 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 5, 48 |
| Conread position: | 146-435 |
| Cow position: | chr18:1954808-1954509 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 122 |
| Conread position: | 157-501 |
| Cow position: | chr18:42432300-42431937 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 28 |
| Conread position: | 166-501 |
| Cow position: | chr18:48713351-48713697 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 71, 195 |
| Conread position: | 166-501 |
| Cow position: | chr18:52877181-52877503 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 176-392 |
| Cow position: | chr18:16686525-16686298 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 178-439 |
| Cow position: | chr18:51190777-51190515 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 135, 187 |
| Conread position: | 180-501 |
| Cow position: | chr18:15517349-15517019 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 184-439 |
| Cow position: | chr18:21740990-21740731 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 118 |
| Conread position: | 184-491 |
| Cow position: | chr18:28930810-28930496 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 187-501 |
| Cow position: | chr18:8171262-8170936 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 207-501 |
| Cow position: | chr18:20462851-20462552 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 211-501 |
| Cow position: | chr18:50095547-50095254 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 157 |
| Conread position: | 212-495 |
| Cow position: | chr18:51594954-51594668 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 220-500 |
| Cow position: | chr18:25006633-25006352 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 135 |
| Conread position: | 240-543 |
| Cow position: | chr18:1571356-1571042 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 245-507 |
| Cow position: | chr18:49038344-49038615 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 157 |
| Conread position: | 247-431 |
| Cow position: | chr18:7076841-7077030 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 251-501 |
| Cow position: | chr18:43797063-43796804 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 147 |
| Conread position: | 251-502 |
| Cow position: | chr18:31711677-31711421 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 183 |
| Conread position: | 258-439 |
| Cow position: | chr18:49324526-49324355 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 264-488 |
| Cow position: | chr18:8949890-8949655 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 90 |
| Conread position: | 264-501 |
| Cow position: | chr18:35535247-35534995 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 264-536 |
| Cow position: | chr18:35367283-35367015 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 149, 85 |
| Conread position: | 285-543 |
| Cow position: | chr18:15809865-15809613 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 288-501 |
| Cow position: | chr18:23630671-23630460 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 149, 72 |
| Conread position: | 288-502 |
| Cow position: | chr18:2146646-2146436 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 307-501 |
| Cow position: | chr18:50632490-50632290 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 141, 115 |
Show alignments to all cow chromosomes.