Cow genome map

Conread name: rspc030_i12.y1

Conread position: 2-407
Cow position: chr19:31594959-31595375 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 9

Conread position: 4-501
Cow position: chr19:55357720-55358217 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 326
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 50, 10

Conread position: 5-309
Cow position: chr19:56382811-56383109 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 53

Conread position: 5-416
Cow position: chr19:42240627-42240214 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 23

Conread position: 5-420
Cow position: chr19:21198789-21199226 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 109

Conread position: 5-434
Cow position: chr19:20671239-20670805 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 109

Conread position: 5-439
Cow position: chr19:25727216-25726779 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 5-446
Cow position: chr19:18786662-18786209 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 5-451
Cow position: chr19:14592716-14593173 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 93

Conread position: 5-492
Cow position: chr19:14473116-14472610 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 339
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 44, 109

Conread position: 5-499
Cow position: chr19:5185591-5185083 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 351

Conread position: 5-499
Cow position: chr19:8127979-8128483 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 30

Conread position: 5-499
Cow position: chr19:39576907-39576399 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 95

Conread position: 5-501
Cow position: chr19:13267524-13267029 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 323
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 162

Conread position: 5-501
Cow position: chr19:24061959-24062451 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 109

Conread position: 5-508
Cow position: chr19:54942639-54943150 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 322
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 30, 107

Conread position: 6-495
Cow position: chr19:34956034-34955542 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 108

Conread position: 6-501
Cow position: chr19:7637559-7637058 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 349
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 89, 48

Conread position: 6-501
Cow position: chr19:35539968-35540460 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 169

Conread position: 6-525
Cow position: chr19:46454512-46455040 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 110

Conread position: 7-501
Cow position: chr19:20661753-20661235 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 109

Conread position: 8-516
Cow position: chr19:55968022-55967532 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 325
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 20

Conread position: 11-407
Cow position: chr19:30533610-30534002 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 90

Conread position: 11-501
Cow position: chr19:12601480-12601979 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 341
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 30, 144

Conread position: 20-543
Cow position: chr19:33912955-33912403 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 181

Conread position: 33-417
Cow position: chr19:35741851-35742246 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 185

Conread position: 40-386
Cow position: chr19:18750380-18750022 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 71

Conread position: 45-373
Cow position: chr19:20693205-20693541 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 73, 52

Conread position: 48-435
Cow position: chr19:40051676-40051291 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 221, 62

Conread position: 59-435
Cow position: chr19:19919737-19919360 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 257
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 195, 29

Conread position: 60-439
Cow position: chr19:8332016-8332407 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 37

Conread position: 64-501
Cow position: chr19:7668424-7668872 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 321
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 41, 80

Conread position: 65-390
Cow position: chr19:42205664-42205983 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 53, 32

Conread position: 67-392
Cow position: chr19:21363713-21363378 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 23

Conread position: 67-435
Cow position: chr19:48722754-48723125 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 23

Conread position: 69-446
Cow position: chr19:14347740-14348124 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 272
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 43

Conread position: 69-501
Cow position: chr19:1968574-1968144 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 41

Conread position: 71-385
Cow position: chr19:33823049-33823371 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 39

Conread position: 71-420
Cow position: chr19:41584706-41585056 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 40

Conread position: 71-435
Cow position: chr19:1664462-1664088 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 250
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 185, 164

Conread position: 71-501
Cow position: chr19:11376673-11376244 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 39

Conread position: 71-501
Cow position: chr19:24144750-24145198 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 26

Conread position: 71-501
Cow position: chr19:42694720-42695166 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 99

Conread position: 71-508
Cow position: chr19:27612435-27611995 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 26

Conread position: 73-391
Cow position: chr19:47109777-47110099 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 219
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 161, 24

Conread position: 76-500
Cow position: chr19:21378729-21378290 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 35

Conread position: 81-501
Cow position: chr19:5116125-5115715 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 288
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 36, 29

Conread position: 83-501
Cow position: chr19:3621172-3621606 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 80

Conread position: 86-501
Cow position: chr19:26976300-26975894 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 281
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 169, 20

Conread position: 92-429
Cow position: chr19:34000965-34001303 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 161, 21

Conread position: 94-501
Cow position: chr19:30471582-30471180 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 270
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 24, 16

Conread position: 94-528
Cow position: chr19:35762501-35762052 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 182

Conread position: 115-359
Cow position: chr19:11565375-11565134 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 140, 87

Conread position: 120-501
Cow position: chr19:16621574-16621181 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 132, 18

Conread position: 123-501
Cow position: chr19:17972475-17972091 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 267
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 46

Conread position: 128-501
Cow position: chr19:48960179-48960570 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 280

Conread position: 129-495
Cow position: chr19:36097011-36097395 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 259
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 87, 49

Conread position: 132-501
Cow position: chr19:25655445-25655067 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 122, 294

Conread position: 145-501
Cow position: chr19:24760078-24759710 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 261
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 90, 8

Conread position: 161-427
Cow position: chr19:25628314-25628042 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 130, 23

Conread position: 170-501
Cow position: chr19:47453262-47453608 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 20, 69

Conread position: 172-492
Cow position: chr19:34287854-34288181 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 218
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 42, 64

Conread position: 172-501
Cow position: chr19:38499997-38500333 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 54, 45

Conread position: 173-480
Cow position: chr19:15719787-15719469 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 81, 23

Conread position: 176-528
Cow position: chr19:35107362-35107720 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 67, 37

Conread position: 181-491
Cow position: chr19:54121118-54121432 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 217
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 62, 7

Conread position: 190-499
Cow position: chr19:15852795-15853101 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 214
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 211, 73

Conread position: 194-501
Cow position: chr19:52158386-52158719 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 226
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 75, 206

Conread position: 198-501
Cow position: chr19:6334012-6334308 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 51, 0

Conread position: 219-514
Cow position: chr19:23394662-23394976 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 24, 135

Conread position: 224-499
Cow position: chr19:24005548-24005828 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 43

Conread position: 224-501
Cow position: chr19:23378568-23378854 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 17, 71

Conread position: 235-420
Cow position: chr19:3834172-3834360 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 58, 14

Conread position: 242-501
Cow position: chr19:18054342-18054082 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 156, 47

Conread position: 251-501
Cow position: chr19:23889569-23889309 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 93, 99

Conread position: 251-501
Cow position: chr19:33575435-33575696 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 73

Conread position: 257-500
Cow position: chr19:13488587-13488330 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 258-501
Cow position: chr19:11646491-11646741 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 57

Conread position: 258-501
Cow position: chr19:34420332-34420586 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 33, 79

Conread position: 261-501
Cow position: chr19:28810387-28810139 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 76, 26

Conread position: 264-501
Cow position: chr19:42768174-42767926 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 267-501
Cow position: chr19:10238664-10238913 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 9

Conread position: 267-501
Cow position: chr19:49221684-49221445 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 175, 31

Conread position: 285-495
Cow position: chr19:23087936-23088152 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 65

Conread position: 286-501
Cow position: chr19:10538597-10538381 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 117, 10

Conread position: 288-501
Cow position: chr19:23756787-23756574 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 293-501
Cow position: chr19:38732099-38732315 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 57

Conread position: 293-504
Cow position: chr19:33988028-33988249 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 87

Conread position: 305-501
Cow position: chr19:25835355-25835160 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 44

Conread position: 320-500
Cow position: chr19:19916433-19916247 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 101, 0

Show alignments to all cow chromosomes.