Cow genome map

Conread name: rspc030_i12.y1

Conread position: 1-501
Cow position:
Alignm length: 520
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 8

Conread position: 5-300
Cow position:
Alignm length: 304
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 109

Conread position: 5-337
Cow position:
Alignm length: 346
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 49

Conread position: 5-392
Cow position:
Alignm length: 396
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 107

Conread position: 5-409
Cow position:
Alignm length: 430
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 116

Conread position: 5-419
Cow position:
Alignm length: 435
Alignm identity: 290
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 43, 23

Conread position: 5-420
Cow position:
Alignm length: 427
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 5-427
Cow position:
Alignm length: 438
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 109

Conread position: 5-435
Cow position:
Alignm length: 443
Alignm identity: 297
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 28, 108

Conread position: 5-435
Cow position:
Alignm length: 442
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 323

Conread position: 5-437
Cow position:
Alignm length: 453
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 113

Conread position: 5-437
Cow position:
Alignm length: 440
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 79

Conread position: 5-495
Cow position:
Alignm length: 521
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 109

Conread position: 5-500
Cow position:
Alignm length: 513
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 95

Conread position: 5-500
Cow position:
Alignm length: 525
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 5-501
Cow position:
Alignm length: 510
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 105

Conread position: 5-501
Cow position:
Alignm length: 517
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 246

Conread position: 5-501
Cow position:
Alignm length: 535
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 118

Conread position: 5-501
Cow position:
Alignm length: 514
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 152

Conread position: 5-501
Cow position:
Alignm length: 513
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 109

Conread position: 5-501
Cow position:
Alignm length: 512
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 20

Conread position: 5-501
Cow position:
Alignm length: 519
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 63

Conread position: 5-501
Cow position:
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 5-502
Cow position:
Alignm length: 511
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 217

Conread position: 5-534
Cow position:
Alignm length: 542
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 9

Conread position: 5-536
Cow position:
Alignm length: 564
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 109

Conread position: 6-407
Cow position:
Alignm length: 421
Alignm identity: 282
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 112, 48

Conread position: 6-427
Cow position:
Alignm length: 436
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 108

Conread position: 6-435
Cow position:
Alignm length: 444
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 141

Conread position: 6-435
Cow position:
Alignm length: 453
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 95

Conread position: 6-501
Cow position:
Alignm length: 525
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 107

Conread position: 6-528
Cow position:
Alignm length: 539
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 62

Conread position: 7-426
Cow position:
Alignm length: 445
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 94

Conread position: 7-467
Cow position:
Alignm length: 487
Alignm identity: 323
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 84

Conread position: 7-499
Cow position:
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 81

Conread position: 7-501
Cow position:
Alignm length: 519
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 113

Conread position: 7-501
Cow position:
Alignm length: 509
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 94

Conread position: 8-420
Cow position:
Alignm length: 421
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 56

Conread position: 8-492
Cow position:
Alignm length: 515
Alignm identity: 344
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 33, 93

Conread position: 8-502
Cow position:
Alignm length: 514
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 200

Conread position: 10-439
Cow position:
Alignm length: 443
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 91

Conread position: 10-446
Cow position:
Alignm length: 441
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 87

Conread position: 13-435
Cow position:
Alignm length: 437
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 84

Conread position: 15-431
Cow position:
Alignm length: 432
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 87

Conread position: 15-495
Cow position:
Alignm length: 504
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 209

Conread position: 16-455
Cow position:
Alignm length: 461
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 85

Conread position: 24-439
Cow position:
Alignm length: 428
Alignm identity: 257
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 229, 82

Conread position: 26-501
Cow position:
Alignm length: 486
Alignm identity: 323
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 28, 57

Conread position: 28-538
Cow position:
Alignm length: 543
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 109

Conread position: 33-393
Cow position:
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 77

Conread position: 33-492
Cow position:
Alignm length: 470
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 77

Conread position: 40-335
Cow position:
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 58

Conread position: 40-492
Cow position:
Alignm length: 461
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 18

Conread position: 46-501
Cow position:
Alignm length: 475
Alignm identity: 301
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 72, 64

Conread position: 48-445
Cow position:
Alignm length: 403
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 10

Conread position: 49-501
Cow position:
Alignm length: 470
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 358

Conread position: 59-501
Cow position:
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 52

Conread position: 60-435
Cow position:
Alignm length: 384
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 297

Conread position: 60-446
Cow position:
Alignm length: 409
Alignm identity: 286
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 59, 28

Conread position: 60-495
Cow position:
Alignm length: 450
Alignm identity: 296
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 58, 50

Conread position: 60-501
Cow position:
Alignm length: 451
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 50

Conread position: 64-394
Cow position:
Alignm length: 344
Alignm identity: 234
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 46

Conread position: 64-451
Cow position:
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 64-453
Cow position:
Alignm length: 401
Alignm identity: 269
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 234, 48

Conread position: 64-498
Cow position:
Alignm length: 456
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 33

Conread position: 65-500
Cow position:
Alignm length: 455
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 45

Conread position: 65-501
Cow position:
Alignm length: 453
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 104

Conread position: 67-446
Cow position:
Alignm length: 392
Alignm identity: 261
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 51, 30

Conread position: 68-507
Cow position:
Alignm length: 466
Alignm identity: 312
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 50, 29

Conread position: 70-501
Cow position:
Alignm length: 444
Alignm identity: 288
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 48, 40

Conread position: 71-436
Cow position:
Alignm length: 381
Alignm identity: 256
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 15, 27

Conread position: 71-500
Cow position:
Alignm length: 466
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 347

Conread position: 71-501
Cow position:
Alignm length: 441
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 26

Conread position: 71-501
Cow position:
Alignm length: 450
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 26

Conread position: 71-502
Cow position:
Alignm length: 451
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 39

Conread position: 72-445
Cow position:
Alignm length: 383
Alignm identity: 256
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 38

Conread position: 72-501
Cow position:
Alignm length: 448
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 25

Conread position: 72-543
Cow position:
Alignm length: 478
Alignm identity: 308
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 46, 38

Conread position: 73-501
Cow position:
Alignm length: 449
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 24

Conread position: 75-501
Cow position:
Alignm length: 446
Alignm identity: 299
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 35

Conread position: 77-427
Cow position:
Alignm length: 368
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 33

Conread position: 78-541
Cow position:
Alignm length: 481
Alignm identity: 300
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 39, 32

Conread position: 81-378
Cow position:
Alignm length: 309
Alignm identity: 216
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 35, 29

Conread position: 82-435
Cow position:
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 15

Conread position: 86-498
Cow position:
Alignm length: 434
Alignm identity: 291
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 32, 11

Conread position: 87-446
Cow position:
Alignm length: 374
Alignm identity: 252
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 18, 86

Conread position: 88-501
Cow position:
Alignm length: 430
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 22

Conread position: 89-501
Cow position:
Alignm length: 425
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 21

Conread position: 90-446
Cow position:
Alignm length: 370
Alignm identity: 255
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 28, 7

Conread position: 90-495
Cow position:
Alignm length: 418
Alignm identity: 280
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 169, 67

Conread position: 92-483
Cow position:
Alignm length: 398
Alignm identity: 273
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 8, 19

Conread position: 92-501
Cow position:
Alignm length: 425
Alignm identity: 288
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 97

Conread position: 94-446
Cow position:
Alignm length: 363
Alignm identity: 252
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 16

Conread position: 94-501
Cow position:
Alignm length: 425
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 274

Conread position: 97-328
Cow position:
Alignm length: 242
Alignm identity: 171
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 124, 105

Conread position: 99-392
Cow position:
Alignm length: 297
Alignm identity: 202
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 181, 88

Conread position: 115-449
Cow position:
Alignm length: 341
Alignm identity: 231
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 130, 30

Conread position: 117-501
Cow position:
Alignm length: 408
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 268

Conread position: 123-500
Cow position:
Alignm length: 393
Alignm identity: 271
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 38, 109

Conread position: 127-435
Cow position:
Alignm length: 319
Alignm identity: 222
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 56, 125

Conread position: 127-472
Cow position:
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 41

Conread position: 127-541
Cow position:
Alignm length: 437
Alignm identity: 285
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 121, 72

Conread position: 129-439
Cow position:
Alignm length: 323
Alignm identity: 226
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 125, 244

Conread position: 136-501
Cow position:
Alignm length: 383
Alignm identity: 261
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 118, 35

Conread position: 138-471
Cow position:
Alignm length: 355
Alignm identity: 248
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 60, 143

Conread position: 145-493
Cow position:
Alignm length: 357
Alignm identity: 243
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 96, 0

Conread position: 146-499
Cow position:
Alignm length: 367
Alignm identity: 249
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 97, 32

Conread position: 157-439
Cow position:
Alignm length: 291
Alignm identity: 209
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 135, 23

Conread position: 161-501
Cow position:
Alignm length: 350
Alignm identity: 236
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 177, 82

Conread position: 162-501
Cow position:
Alignm length: 359
Alignm identity: 239
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 28, 56

Conread position: 166-501
Cow position:
Alignm length: 347
Alignm identity: 228
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 13, 70

Conread position: 168-457
Cow position:
Alignm length: 299
Alignm identity: 208
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 68, 271

Conread position: 174-480
Cow position:
Alignm length: 319
Alignm identity: 219
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 81, 171

Conread position: 174-501
Cow position:
Alignm length: 339
Alignm identity: 227
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 80, 14

Conread position: 175-506
Cow position:
Alignm length: 344
Alignm identity: 235
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 79, 0

Conread position: 179-500
Cow position:
Alignm length: 334
Alignm identity: 214
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 64, 221

Conread position: 188-501
Cow position:
Alignm length: 337
Alignm identity: 233
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 101, 55

Conread position: 189-500
Cow position:
Alignm length: 328
Alignm identity: 215
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 105, 154

Conread position: 211-501
Cow position:
Alignm length: 304
Alignm identity: 204
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 79, 38

Conread position: 214-435
Cow position:
Alignm length: 234
Alignm identity: 164
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 40, 0

Conread position: 224-501
Cow position:
Alignm length: 290
Alignm identity: 195
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 35, 197

Conread position: 239-501
Cow position:
Alignm length: 272
Alignm identity: 182
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 10

Conread position: 240-427
Cow position:
Alignm length: 196
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 9

Conread position: 240-501
Cow position:
Alignm length: 280
Alignm identity: 190
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 48, 9

Conread position: 240-502
Cow position:
Alignm length: 278
Alignm identity: 193
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 52, 9

Conread position: 243-446
Cow position:
Alignm length: 212
Alignm identity: 153
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 46, 9

Conread position: 246-501
Cow position:
Alignm length: 269
Alignm identity: 185
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 251-501
Cow position:
Alignm length: 263
Alignm identity: 178
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 149

Conread position: 251-501
Cow position:
Alignm length: 262
Alignm identity: 179
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 256-500
Cow position:
Alignm length: 253
Alignm identity: 174
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 181, 37

Conread position: 258-501
Cow position:
Alignm length: 263
Alignm identity: 186
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 112

Conread position: 266-501
Cow position:
Alignm length: 249
Alignm identity: 173
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 21, 156

Conread position: 267-501
Cow position:
Alignm length: 251
Alignm identity: 181
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 25, 92

Conread position: 269-437
Cow position:
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 80

Conread position: 287-501
Cow position:
Alignm length: 227
Alignm identity: 159
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 116, 82

Conread position: 288-501
Cow position:
Alignm length: 219
Alignm identity: 152
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 113, 10

Conread position: 289-498
Cow position:
Alignm length: 211
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 7

Show alignments to all cow chromosomes.