Cow genome map
| Conread name: | rspc030_i12.y1 |
| Conread position: | 5-405 |
| Cow position: | chr20:19459926-19459539 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 5-435 |
| Cow position: | chr20:9412212-9412644 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 5-439 |
| Cow position: | chr20:10818512-10818080 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 5-445 |
| Cow position: | chr20:581212-580756 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 104 |
| Conread position: | 5-445 |
| Cow position: | chr20:39398196-39398647 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 5-446 |
| Cow position: | chr20:31746907-31746470 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 5-471 |
| Cow position: | chr20:20202932-20203415 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 5-490 |
| Cow position: | chr20:9433318-9433802 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 5-490 |
| Cow position: | chr20:23792320-23792814 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 5-500 |
| Cow position: | chr20:32847068-32847572 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 5-500 |
| Cow position: | chr20:35889050-35888529 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 5-501 |
| Cow position: | chr20:4756106-4755603 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 5-504 |
| Cow position: | chr20:5702464-5702956 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 5-504 |
| Cow position: | chr20:7426473-7425964 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 5-541 |
| Cow position: | chr20:24069531-24070071 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 6-408 |
| Cow position: | chr20:20778823-20778428 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 112, 29 |
| Conread position: | 6-499 |
| Cow position: | chr20:14806602-14807112 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 109 |
| Conread position: | 6-501 |
| Cow position: | chr20:12582231-12581725 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 6-501 |
| Cow position: | chr20:29844762-29845286 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 40, 118 |
| Conread position: | 6-506 |
| Cow position: | chr20:13751963-13752449 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 6-532 |
| Cow position: | chr20:28982419-28982958 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 91 |
| Conread position: | 7-499 |
| Cow position: | chr20:28604932-28605435 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 47 |
| Conread position: | 7-508 |
| Cow position: | chr20:2819281-2819786 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 93 |
| Conread position: | 13-501 |
| Cow position: | chr20:40176977-40177475 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 30-501 |
| Cow position: | chr20:22064818-22065292 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 48 |
| Conread position: | 33-501 |
| Cow position: | chr20:398545-398081 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 88, 30 |
| Conread position: | 40-501 |
| Cow position: | chr20:22235067-22235530 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 48-501 |
| Cow position: | chr20:8703143-8702699 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 48-501 |
| Cow position: | chr20:10200104-10200580 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 48-501 |
| Cow position: | chr20:10208568-10209038 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 6 |
| Conread position: | 59-501 |
| Cow position: | chr20:8556498-8556039 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 60-446 |
| Cow position: | chr20:5826712-5827105 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 60-495 |
| Cow position: | chr20:21372090-21372521 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 69-436 |
| Cow position: | chr20:42459067-42458700 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 175, 37 |
| Conread position: | 69-510 |
| Cow position: | chr20:14879570-14880026 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 73-449 |
| Cow position: | chr20:38768665-38768295 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 79-481 |
| Cow position: | chr20:6602831-6603244 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 32, 91 |
| Conread position: | 92-446 |
| Cow position: | chr20:11542476-11542116 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 97 |
| Conread position: | 92-501 |
| Cow position: | chr20:32084277-32083868 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 18 |
| Conread position: | 97-435 |
| Cow position: | chr20:36207614-36207970 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 100-501 |
| Cow position: | chr20:2204851-2204455 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 103-406 |
| Cow position: | chr20:37165544-37165837 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 107-501 |
| Cow position: | chr20:14980694-14980276 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 111 |
| Conread position: | 107-501 |
| Cow position: | chr20:27408057-27407664 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 189 |
| Conread position: | 113-500 |
| Cow position: | chr20:31080872-31081251 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 115-501 |
| Cow position: | chr20:3254878-3255265 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 135 |
| Conread position: | 115-540 |
| Cow position: | chr20:16935473-16935049 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 167 |
| Conread position: | 116-492 |
| Cow position: | chr20:34107947-34108311 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 137, 14 |
| Conread position: | 134-499 |
| Cow position: | chr20:8307862-8308233 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 239 |
| Conread position: | 136-386 |
| Cow position: | chr20:36010640-36010903 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 136-437 |
| Cow position: | chr20:1575950-1576255 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 150, 34 |
| Conread position: | 136-501 |
| Cow position: | chr20:28441177-28441550 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 221 |
| Conread position: | 138-501 |
| Cow position: | chr20:4334667-4334307 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 157-464 |
| Cow position: | chr20:13025743-13025425 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 5, 108 |
| Conread position: | 170-473 |
| Cow position: | chr20:32463640-32463322 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 184 |
| Conread position: | 172-501 |
| Cow position: | chr20:8546949-8547291 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 71, 190 |
| Conread position: | 177-420 |
| Cow position: | chr20:39267071-39266817 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 63, 184 |
| Conread position: | 189-501 |
| Cow position: | chr20:18379282-18379608 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 101, 62 |
| Conread position: | 192-501 |
| Cow position: | chr20:7738323-7738003 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 163 |
| Conread position: | 193-499 |
| Cow position: | chr20:22265341-22265038 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 224-501 |
| Cow position: | chr20:7624311-7624028 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 134 |
| Conread position: | 240-437 |
| Cow position: | chr20:38514738-38514936 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 269-501 |
| Cow position: | chr20:33623562-33623328 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 286-501 |
| Cow position: | chr20:3148691-3148912 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 151, 187 |
| Conread position: | 288-501 |
| Cow position: | chr20:20158145-20158362 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 292-501 |
| Cow position: | chr20:24097014-24097226 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 58 |
Show alignments to all cow chromosomes.