Cow genome map

Conread name: rspc030_i12.y1

Conread position: 5-292
Cow position: chr21:21216404-21216115 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 169

Conread position: 5-374
Cow position: chr21:23192781-23192393 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 5-382
Cow position: chr21:2367077-2367456 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 266
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 44, 109

Conread position: 5-392
Cow position: chr21:44515002-44515398 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 284
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 43, 168

Conread position: 5-431
Cow position: chr21:42414362-42413924 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 93

Conread position: 5-435
Cow position: chr21:395615-396044 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 300
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 48

Conread position: 5-435
Cow position: chr21:33350482-33350918 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 5-438
Cow position: chr21:36795337-36795783 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 302
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 44, 112

Conread position: 5-446
Cow position: chr21:5392801-5392351 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 60

Conread position: 5-446
Cow position: chr21:36297216-36297680 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 96

Conread position: 5-483
Cow position: chr21:643074-643557 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 83

Conread position: 5-490
Cow position: chr21:31691218-31691713 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 53

Conread position: 5-501
Cow position: chr21:81807-82311 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 304

Conread position: 5-501
Cow position: chr21:23672483-23672997 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 346
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 43, 61

Conread position: 5-501
Cow position: chr21:24858048-24858568 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 358

Conread position: 5-501
Cow position: chr21:29069591-29069071 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 64

Conread position: 5-501
Cow position: chr21:29214418-29213907 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 179

Conread position: 5-501
Cow position: chr21:33983073-33982562 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 5-530
Cow position: chr21:37299202-37299747 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 6-439
Cow position: chr21:42384246-42384688 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 435

Conread position: 6-499
Cow position: chr21:38120841-38121329 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 112

Conread position: 6-501
Cow position: chr21:641322-641836 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 140

Conread position: 6-504
Cow position: chr21:19196430-19195906 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 253

Conread position: 7-386
Cow position: chr21:4905228-4904839 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 259
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 34, 83

Conread position: 7-427
Cow position: chr21:46263916-46264339 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 107

Conread position: 7-502
Cow position: chr21:6713800-6713271 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 350
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 9, 384

Conread position: 8-527
Cow position: chr21:11740392-11739842 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 108

Conread position: 9-501
Cow position: chr21:5971095-5970594 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 338
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 32, 94

Conread position: 9-501
Cow position: chr21:20160425-20160930 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 93

Conread position: 13-435
Cow position: chr21:23801375-23800951 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 279
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 33, 20

Conread position: 20-501
Cow position: chr21:34653836-34654322 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 82

Conread position: 36-435
Cow position: chr21:26244699-26245091 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 265
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 40

Conread position: 40-437
Cow position: chr21:28626017-28626416 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 271
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 203, 70

Conread position: 48-404
Cow position: chr21:31662244-31662613 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 251
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 70, 62

Conread position: 60-435
Cow position: chr21:29484780-29485155 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 36

Conread position: 60-449
Cow position: chr21:18942032-18941645 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 267
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 183, 18

Conread position: 60-492
Cow position: chr21:27521531-27521098 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 298
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 13, 39

Conread position: 64-386
Cow position: chr21:35996971-35997300 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 220
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 9, 110

Conread position: 64-501
Cow position: chr21:24598459-24598895 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 48

Conread position: 65-501
Cow position: chr21:23586677-23587124 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 45

Conread position: 65-504
Cow position: chr21:22860803-22861247 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 32

Conread position: 71-392
Cow position: chr21:42841784-42841463 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 153, 26

Conread position: 71-445
Cow position: chr21:27569351-27568986 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 46, 26

Conread position: 71-492
Cow position: chr21:31253342-31253776 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 291
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 40

Conread position: 71-501
Cow position: chr21:5238202-5238640 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 295
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 44, 39

Conread position: 71-501
Cow position: chr21:6051313-6051757 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 301
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 45, 39

Conread position: 73-501
Cow position: chr21:32559545-32559119 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 37

Conread position: 74-436
Cow position: chr21:13365151-13365522 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 249
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 99

Conread position: 74-501
Cow position: chr21:45355646-45356067 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 280
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 181, 102

Conread position: 78-501
Cow position: chr21:47465307-47464867 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 299
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 172, 71

Conread position: 81-452
Cow position: chr21:28190845-28191225 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 261
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 37, 29

Conread position: 82-392
Cow position: chr21:18800715-18800400 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 220
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 10, 82

Conread position: 83-446
Cow position: chr21:9990333-9990696 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 27

Conread position: 83-499
Cow position: chr21:802475-802073 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 27

Conread position: 84-501
Cow position: chr21:17183741-17184170 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 292
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 15, 27

Conread position: 89-492
Cow position: chr21:32339912-32339502 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 268
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 135, 68

Conread position: 99-437
Cow position: chr21:27624547-27624877 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 154, 26

Conread position: 104-498
Cow position: chr21:7825333-7824941 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 276
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 139, 9

Conread position: 108-501
Cow position: chr21:41590714-41590314 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 273
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 8, 78

Conread position: 115-407
Cow position: chr21:45921208-45920909 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 197
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 87, 55

Conread position: 118-337
Cow position: chr21:18041989-18041768 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 136, 35

Conread position: 124-405
Cow position: chr21:17637758-17638039 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 90, 128

Conread position: 124-501
Cow position: chr21:48234299-48233924 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 258
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 145, 33

Conread position: 128-501
Cow position: chr21:6910020-6909637 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 249
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 88, 262

Conread position: 129-437
Cow position: chr21:20260456-20260140 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 125, 31

Conread position: 129-501
Cow position: chr21:12462106-12461717 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 50

Conread position: 136-384
Cow position: chr21:17856415-17856670 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 101, 81

Conread position: 136-501
Cow position: chr21:12301632-12301278 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 254
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 152, 51

Conread position: 138-439
Cow position: chr21:12723030-12723332 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 108, 178

Conread position: 145-501
Cow position: chr21:30222222-30222594 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 98, 43

Conread position: 191-437
Cow position: chr21:45262889-45262631 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 215

Conread position: 192-472
Cow position: chr21:16569825-16570118 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 63, 168

Conread position: 192-501
Cow position: chr21:44214048-44214363 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 217
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 62, 180

Conread position: 209-392
Cow position: chr21:297694-297888 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 152

Conread position: 231-501
Cow position: chr21:674655-674920 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 24

Conread position: 260-501
Cow position: chr21:14126283-14126524 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 55

Conread position: 264-501
Cow position: chr21:71585-71838 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 28, 138

Conread position: 266-501
Cow position: chr21:12104366-12104605 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 135

Conread position: 267-501
Cow position: chr21:8426449-8426695 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 26, 89

Conread position: 280-501
Cow position: chr21:22850943-22851167 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 11, 41

Conread position: 286-501
Cow position: chr21:19868926-19868710 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 25

Conread position: 292-501
Cow position: chr21:6851206-6851417 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 128, 0

Conread position: 294-501
Cow position: chr21:39393784-39394001 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 56

Conread position: 317-501
Cow position: chr21:8506487-8506295 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 0

Conread position: 317-501
Cow position: chr21:8509375-8509183 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 352-507
Cow position: chr21:21158905-21159061 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 42

Show alignments to all cow chromosomes.