Cow genome map
| Conread name: | rspc030_i12.y1 |
| Conread position: | 5-435 |
| Cow position: | chr23:38455510-38455062 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 5-439 |
| Cow position: | chr23:26986605-26986151 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 115 |
| Conread position: | 5-446 |
| Cow position: | chr23:8698121-8698547 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 66 |
| Conread position: | 5-446 |
| Cow position: | chr23:10554336-10553884 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 101 |
| Conread position: | 5-451 |
| Cow position: | chr23:24866981-24867439 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 429 |
| Conread position: | 5-457 |
| Cow position: | chr23:9268265-9268719 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 96 |
| Conread position: | 5-480 |
| Cow position: | chr23:7844964-7845461 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 109 |
| Conread position: | 5-499 |
| Cow position: | chr23:39049737-39049251 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 5-501 |
| Cow position: | chr23:533908-534417 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 5-501 |
| Cow position: | chr23:2502189-2501666 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 174 |
| Conread position: | 5-501 |
| Cow position: | chr23:26841131-26841613 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 338 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 113, 43 |
| Conread position: | 7-500 |
| Cow position: | chr23:39778093-39778587 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 104 |
| Conread position: | 15-406 |
| Cow position: | chr23:4980853-4980460 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 32-501 |
| Cow position: | chr23:29626120-29626617 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 33-437 |
| Cow position: | chr23:13599055-13599458 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 85, 47 |
| Conread position: | 40-435 |
| Cow position: | chr23:29459380-29458983 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 48-499 |
| Cow position: | chr23:1883115-1883582 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 58-502 |
| Cow position: | chr23:186903-187371 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 313 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 63-495 |
| Cow position: | chr23:21452996-21452547 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 107 |
| Conread position: | 64-499 |
| Cow position: | chr23:29346021-29345588 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 64-501 |
| Cow position: | chr23:20388898-20388475 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 279 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 226, 33 |
| Conread position: | 67-501 |
| Cow position: | chr23:16881416-16880979 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 69-435 |
| Cow position: | chr23:3967804-3967444 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 221, 40 |
| Conread position: | 71-495 |
| Cow position: | chr23:6244842-6244417 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 78-543 |
| Cow position: | chr23:8063305-8063761 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 79-437 |
| Cow position: | chr23:27544583-27544944 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 30, 95 |
| Conread position: | 86-498 |
| Cow position: | chr23:40891122-40891532 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 168, 11 |
| Conread position: | 89-386 |
| Cow position: | chr23:29521232-29521539 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 91-501 |
| Cow position: | chr23:10416658-10416237 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 106-381 |
| Cow position: | chr23:1489835-1490102 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 112-542 |
| Cow position: | chr23:29801218-29801671 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 135-501 |
| Cow position: | chr23:34356442-34356832 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 136-498 |
| Cow position: | chr23:1585579-1585211 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 119, 153 |
| Conread position: | 137-407 |
| Cow position: | chr23:21659748-21660033 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 137-458 |
| Cow position: | chr23:21764728-21765064 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 122, 49 |
| Conread position: | 137-501 |
| Cow position: | chr23:5426238-5426628 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 120, 270 |
| Conread position: | 138-446 |
| Cow position: | chr23:2488173-2487864 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 104, 116 |
| Conread position: | 143-407 |
| Cow position: | chr23:3282298-3282034 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 148-501 |
| Cow position: | chr23:40081349-40081690 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 162-492 |
| Cow position: | chr23:7360950-7361277 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 172-500 |
| Cow position: | chr23:18286039-18286373 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 174-495 |
| Cow position: | chr23:35938191-35938514 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 74, 13 |
| Conread position: | 178-446 |
| Cow position: | chr23:21502789-21502506 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 233 |
| Conread position: | 179-499 |
| Cow position: | chr23:34611621-34611307 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 159, 112 |
| Conread position: | 188-420 |
| Cow position: | chr23:17404697-17404939 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 217 |
| Conread position: | 192-501 |
| Cow position: | chr23:12363756-12363428 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 60, 169 |
| Conread position: | 199-501 |
| Cow position: | chr23:1438166-1438469 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 61, 38 |
| Conread position: | 201-501 |
| Cow position: | chr23:5795349-5795667 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 158 |
| Conread position: | 220-501 |
| Cow position: | chr23:1222349-1222050 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 271 |
| Conread position: | 225-501 |
| Cow position: | chr23:24685147-24685431 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 229-540 |
| Cow position: | chr23:24966559-24966229 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 240-492 |
| Cow position: | chr23:17486911-17486645 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 240-500 |
| Cow position: | chr23:3293607-3293879 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 245-501 |
| Cow position: | chr23:19872755-19872509 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 116 |
| Conread position: | 258-501 |
| Cow position: | chr23:16961228-16961477 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 33, 100 |
| Conread position: | 258-514 |
| Cow position: | chr23:22586821-22587082 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 183, 32 |
| Conread position: | 259-480 |
| Cow position: | chr23:1981721-1981498 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 265-538 |
| Cow position: | chr23:18749126-18748847 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 33, 141 |
| Conread position: | 288-501 |
| Cow position: | chr23:13202389-13202180 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 292-502 |
| Cow position: | chr23:20539358-20539571 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 294-501 |
| Cow position: | chr23:7709765-7709973 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 104, 99 |
| Conread position: | 307-501 |
| Cow position: | chr23:22668517-22668321 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 310-540 |
| Cow position: | chr23:5395485-5395251 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 84 |
Show alignments to all cow chromosomes.