Cow genome map
| Conread name: | rspc030_i12.y1 |
| Conread position: | 5-298 |
| Cow position: | chr25:23739580-23739298 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 5-337 |
| Cow position: | chr25:40388785-40388451 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 5-389 |
| Cow position: | chr25:32191340-32191725 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 5-402 |
| Cow position: | chr25:8576371-8576771 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 5-420 |
| Cow position: | chr25:36037119-36036683 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 119 |
| Conread position: | 5-439 |
| Cow position: | chr25:36761787-36762221 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 112, 23 |
| Conread position: | 5-445 |
| Cow position: | chr25:27531597-27531152 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 5-480 |
| Cow position: | chr25:11662144-11661662 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 5-500 |
| Cow position: | chr25:21191161-21191662 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 246 |
| Conread position: | 5-501 |
| Cow position: | chr25:1837914-1838429 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 344 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 5-501 |
| Cow position: | chr25:7641777-7641269 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 5-501 |
| Cow position: | chr25:11437131-11436638 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 109 |
| Conread position: | 5-540 |
| Cow position: | chr25:24572743-24573283 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 6-435 |
| Cow position: | chr25:22530959-22531392 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 6-443 |
| Cow position: | chr25:37637982-37637551 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 6-501 |
| Cow position: | chr25:4522145-4521655 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 354 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 45, 95 |
| Conread position: | 6-501 |
| Cow position: | chr25:15273362-15273850 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 7-499 |
| Cow position: | chr25:8120450-8120965 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 8-436 |
| Cow position: | chr25:6683387-6682950 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 158 |
| Conread position: | 8-502 |
| Cow position: | chr25:23829440-23828943 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 11-501 |
| Cow position: | chr25:17975690-17975213 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 103 |
| Conread position: | 15-437 |
| Cow position: | chr25:25051703-25051264 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 30-453 |
| Cow position: | chr25:15714581-15715002 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 201 |
| Conread position: | 30-499 |
| Cow position: | chr25:18721408-18720943 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 33-501 |
| Cow position: | chr25:16319423-16318964 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 39-508 |
| Cow position: | chr25:33457417-33457922 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 334 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 58-501 |
| Cow position: | chr25:14512844-14513292 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 60, 39 |
| Conread position: | 60-437 |
| Cow position: | chr25:23917572-23917954 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 61-443 |
| Cow position: | chr25:9990358-9989992 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 10 |
| Conread position: | 67-492 |
| Cow position: | chr25:20007877-20008311 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 87 |
| Conread position: | 69-457 |
| Cow position: | chr25:12117247-12116864 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 41 |
| Conread position: | 71-500 |
| Cow position: | chr25:7306039-7306475 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 71-501 |
| Cow position: | chr25:33550247-33550697 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 73-446 |
| Cow position: | chr25:15254588-15254228 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 99 |
| Conread position: | 75-388 |
| Cow position: | chr25:5837221-5836893 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 75-446 |
| Cow position: | chr25:20785836-20785467 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 78-501 |
| Cow position: | chr25:24669682-24669266 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 297 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 80-336 |
| Cow position: | chr25:20211336-20211068 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 88-483 |
| Cow position: | chr25:41132597-41132198 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 136, 94 |
| Conread position: | 102-386 |
| Cow position: | chr25:10218279-10217987 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 103-437 |
| Cow position: | chr25:6961377-6961040 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 106-537 |
| Cow position: | chr25:22178696-22179133 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 115-300 |
| Cow position: | chr25:12899540-12899728 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 128, 10 |
| Conread position: | 117-495 |
| Cow position: | chr25:2624591-2624974 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 195 |
| Conread position: | 124-501 |
| Cow position: | chr25:13272363-13272755 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 164, 107 |
| Conread position: | 127-501 |
| Cow position: | chr25:17704546-17704925 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 97, 173 |
| Conread position: | 128-540 |
| Cow position: | chr25:7750248-7750671 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 55, 108 |
| Conread position: | 137-501 |
| Cow position: | chr25:14720559-14720918 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 40 |
| Conread position: | 137-506 |
| Cow position: | chr25:32453591-32453239 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 161-469 |
| Cow position: | chr25:32277772-32277460 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 153 |
| Conread position: | 161-491 |
| Cow position: | chr25:23245182-23244828 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 249 |
| Conread position: | 170-501 |
| Cow position: | chr25:30462463-30462135 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 188-427 |
| Cow position: | chr25:12609199-12609443 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 170 |
| Conread position: | 203-501 |
| Cow position: | chr25:12510140-12509835 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 44, 238 |
| Conread position: | 206-499 |
| Cow position: | chr25:4245562-4245849 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 209-446 |
| Cow position: | chr25:9843052-9843298 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 214-500 |
| Cow position: | chr25:19364181-19363875 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 245-443 |
| Cow position: | chr25:7799468-7799664 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 245-501 |
| Cow position: | chr25:13621444-13621176 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 263-501 |
| Cow position: | chr25:1840254-1840507 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 286-501 |
| Cow position: | chr25:18810306-18810517 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 145, 9 |
| Conread position: | 287-501 |
| Cow position: | chr25:11432982-11432766 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 298-500 |
| Cow position: | chr25:35339216-35339005 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 300-500 |
| Cow position: | chr25:36873357-36873152 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 101, 94 |
| Conread position: | 320-501 |
| Cow position: | chr25:31657281-31657094 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 346-501 |
| Cow position: | chr25:31926355-31926198 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 57, 48 |
Show alignments to all cow chromosomes.