Cow genome map
| Conread name: | rspc030_i12.y1 |
| Conread position: | 5-427 |
| Cow position: | chr27:1123300-1122883 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 5-434 |
| Cow position: | chr27:20641060-20641489 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 303 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 5-437 |
| Cow position: | chr27:20549400-20549867 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 319 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 43, 442 |
| Conread position: | 5-447 |
| Cow position: | chr27:26412975-26413425 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 5-447 |
| Cow position: | chr27:26999142-26999587 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 308 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 5-492 |
| Cow position: | chr27:10582646-10582147 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 332 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 5-492 |
| Cow position: | chr27:14670098-14670603 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 5-501 |
| Cow position: | chr27:17397172-17397683 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 49 |
| Conread position: | 5-501 |
| Cow position: | chr27:23452757-23452231 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 30 |
| Conread position: | 6-479 |
| Cow position: | chr27:24477682-24477216 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 6-501 |
| Cow position: | chr27:8353746-8353263 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 7-500 |
| Cow position: | chr27:1636666-1637157 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 7-501 |
| Cow position: | chr27:15454494-15453981 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 7-501 |
| Cow position: | chr27:19388298-19387789 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 7-540 |
| Cow position: | chr27:1768357-1768894 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 356 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 47, 104 |
| Conread position: | 8-501 |
| Cow position: | chr27:22035097-22035603 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 102 |
| Conread position: | 10-457 |
| Cow position: | chr27:22418489-22418944 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 16-511 |
| Cow position: | chr27:21668853-21669357 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 95 |
| Conread position: | 17-420 |
| Cow position: | chr27:23483496-23483085 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 29-501 |
| Cow position: | chr27:7412638-7412162 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 228 |
| Conread position: | 30-391 |
| Cow position: | chr27:15203977-15204342 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 45-507 |
| Cow position: | chr27:16284712-16284251 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 48-495 |
| Cow position: | chr27:27388792-27389253 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 112 |
| Conread position: | 48-501 |
| Cow position: | chr27:30890522-30890069 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 65-451 |
| Cow position: | chr27:29038721-29039113 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 71-386 |
| Cow position: | chr27:20553930-20553624 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 71-392 |
| Cow position: | chr27:22454565-22454889 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 41 |
| Conread position: | 72-401 |
| Cow position: | chr27:30374358-30374690 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 74-431 |
| Cow position: | chr27:19661153-19660779 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 74-501 |
| Cow position: | chr27:27632399-27632825 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 112 |
| Conread position: | 81-498 |
| Cow position: | chr27:19685511-19685939 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 93 |
| Conread position: | 92-501 |
| Cow position: | chr27:16705439-16705021 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 129, 64 |
| Conread position: | 100-411 |
| Cow position: | chr27:4074-3763 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 9, 104 |
| Conread position: | 103-501 |
| Cow position: | chr27:22547223-22547620 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 121-501 |
| Cow position: | chr27:4944365-4944738 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 218, 91 |
| Conread position: | 136-446 |
| Cow position: | chr27:27460423-27460739 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 100, 203 |
| Conread position: | 138-510 |
| Cow position: | chr27:23891084-23890693 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 34 |
| Conread position: | 145-383 |
| Cow position: | chr27:20789240-20789484 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 146-501 |
| Cow position: | chr27:427111-426738 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 95, 134 |
| Conread position: | 147-446 |
| Cow position: | chr27:16589575-16589868 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 174-407 |
| Cow position: | chr27:16626010-16625771 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 5 |
| Conread position: | 184-531 |
| Cow position: | chr27:22386974-22386627 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 70, 124 |
| Conread position: | 193-501 |
| Cow position: | chr27:20092743-20093045 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 102, 50 |
| Conread position: | 226-407 |
| Cow position: | chr27:8405763-8405951 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 131 |
| Conread position: | 244-420 |
| Cow position: | chr27:26407125-26407301 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 251-501 |
| Cow position: | chr27:23559997-23560261 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 47, 150 |
| Conread position: | 252-446 |
| Cow position: | chr27:22348521-22348322 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 272-506 |
| Cow position: | chr27:28478594-28478348 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 294-501 |
| Cow position: | chr27:15002994-15003211 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 294-501 |
| Cow position: | chr27:27055270-27055064 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 56 |
Show alignments to all cow chromosomes.