Cow genome map

Conread name: rspc030_i12.y1

Conread position: 2-501
Cow position: chr28:4070641-4071151 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 8

Conread position: 4-501
Cow position: chr28:25056649-25057149 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 111

Conread position: 5-407
Cow position: chr28:23675827-23676228 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 278
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 113, 92

Conread position: 5-420
Cow position: chr28:18590949-18591373 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 83

Conread position: 5-436
Cow position: chr28:11752466-11752020 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 402

Conread position: 5-437
Cow position: chr28:21598574-21598130 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 297
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 97

Conread position: 5-489
Cow position: chr28:4138999-4138486 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 339
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 30, 183

Conread position: 5-489
Cow position: chr28:30303508-30303027 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 28

Conread position: 5-491
Cow position: chr28:11585528-11585026 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 17

Conread position: 5-500
Cow position: chr28:3914389-3914897 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 105

Conread position: 5-501
Cow position: chr28:8347401-8347927 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 360
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 121

Conread position: 5-501
Cow position: chr28:10589350-10588840 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 140

Conread position: 5-501
Cow position: chr28:11426857-11426355 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 30

Conread position: 5-501
Cow position: chr28:13473986-13474492 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 95

Conread position: 5-501
Cow position: chr28:16919482-16918981 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 108

Conread position: 5-501
Cow position: chr28:21844635-21845144 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 5-501
Cow position: chr28:26614574-26615046 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 99

Conread position: 5-502
Cow position: chr28:661792-662294 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 342
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 36, 124

Conread position: 5-502
Cow position: chr28:3745882-3746391 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 77

Conread position: 5-505
Cow position: chr28:16211418-16210905 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 5-508
Cow position: chr28:14997743-14998264 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 96

Conread position: 5-543
Cow position: chr28:22332229-22332769 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 70

Conread position: 6-391
Cow position: chr28:20312954-20313351 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 280
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 38, 109

Conread position: 6-407
Cow position: chr28:21380561-21380969 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 86

Conread position: 6-439
Cow position: chr28:12964257-12964689 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 108

Conread position: 6-480
Cow position: chr28:5203885-5204362 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 50

Conread position: 6-501
Cow position: chr28:8787230-8787732 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 110

Conread position: 7-495
Cow position: chr28:5684385-5684887 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 194

Conread position: 7-500
Cow position: chr28:16346835-16346346 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 57

Conread position: 9-501
Cow position: chr28:26151708-26152204 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 316
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 178, 33

Conread position: 9-531
Cow position: chr28:33884093-33884625 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 354
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 20

Conread position: 13-498
Cow position: chr28:5931034-5931534 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 334
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 28, 107

Conread position: 27-440
Cow position: chr28:31110301-31109880 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 76

Conread position: 33-501
Cow position: chr28:24966099-24966579 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 330
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 85, 64

Conread position: 46-501
Cow position: chr28:23008004-23007549 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 312
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 66, 118

Conread position: 48-499
Cow position: chr28:26743348-26743822 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 315
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 70, 49

Conread position: 51-439
Cow position: chr28:5128998-5128605 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 46

Conread position: 59-463
Cow position: chr28:25596369-25596778 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 103

Conread position: 59-476
Cow position: chr28:3408480-3408054 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 281
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 59, 38

Conread position: 59-501
Cow position: chr28:20963795-20963354 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 292
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 97, 38

Conread position: 60-435
Cow position: chr28:18934191-18934572 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 254
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 5

Conread position: 61-435
Cow position: chr28:19026264-19025887 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 57, 49

Conread position: 64-407
Cow position: chr28:26922622-26922278 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 241
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 54, 33

Conread position: 66-501
Cow position: chr28:3493040-3492594 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 31

Conread position: 68-501
Cow position: chr28:16370328-16369896 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 29

Conread position: 71-501
Cow position: chr28:26719109-26719523 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 294
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 182, 39

Conread position: 71-508
Cow position: chr28:1099893-1099477 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 300
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 47, 39

Conread position: 73-446
Cow position: chr28:5236849-5236477 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 249
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 151, 38

Conread position: 73-453
Cow position: chr28:2898746-2899123 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 255
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 37

Conread position: 79-534
Cow position: chr28:31841583-31841121 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 309
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 38, 31

Conread position: 83-501
Cow position: chr28:9636696-9636264 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 27

Conread position: 86-499
Cow position: chr28:34430663-34430232 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 284
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 33, 24

Conread position: 88-500
Cow position: chr28:11884757-11884339 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 22

Conread position: 90-480
Cow position: chr28:2132155-2131765 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 203, 112

Conread position: 97-501
Cow position: chr28:4016304-4016716 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 13

Conread position: 100-420
Cow position: chr28:24017779-24018087 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 214
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 55

Conread position: 102-508
Cow position: chr28:4090263-4089859 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 288
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 152, 11

Conread position: 115-501
Cow position: chr28:5437299-5436893 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 276
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 127, 148

Conread position: 115-501
Cow position: chr28:29416924-29416532 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 123

Conread position: 117-501
Cow position: chr28:12598140-12598529 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 255
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 99, 137

Conread position: 135-435
Cow position: chr28:11829130-11828844 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 121

Conread position: 137-499
Cow position: chr28:30937852-30937492 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 261
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 100, 128

Conread position: 138-543
Cow position: chr28:26982931-26982499 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 280
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 268

Conread position: 139-501
Cow position: chr28:9684504-9684144 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 151, 94

Conread position: 145-329
Cow position: chr28:657625-657439 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 154, 15

Conread position: 168-413
Cow position: chr28:2872760-2873015 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 86, 6

Conread position: 172-501
Cow position: chr28:24082116-24082463 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 58, 16

Conread position: 194-446
Cow position: chr28:8140350-8140609 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 209

Conread position: 206-500
Cow position: chr28:11079186-11079492 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 141

Conread position: 219-502
Cow position: chr28:19564335-19564041 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 201
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 70, 199

Conread position: 224-435
Cow position: chr28:16246165-16245947 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 39

Conread position: 224-501
Cow position: chr28:4181900-4182194 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 18, 250

Conread position: 226-499
Cow position: chr28:22813165-22813439 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 186
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 18

Conread position: 240-480
Cow position: chr28:7350576-7350825 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 53, 9

Conread position: 244-501
Cow position: chr28:7619231-7618967 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 44, 114

Conread position: 251-493
Cow position: chr28:3740809-3741054 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 100

Conread position: 258-500
Cow position: chr28:32358055-32358296 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 179, 22

Conread position: 258-501
Cow position: chr28:4013022-4013276 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 37, 0

Conread position: 260-497
Cow position: chr28:7132138-7131902 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 179, 31

Conread position: 282-501
Cow position: chr28:5254839-5255064 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 17, 10

Conread position: 286-490
Cow position: chr28:3445511-3445298 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 133, 25

Conread position: 288-480
Cow position: chr28:11816696-11816507 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 63

Conread position: 297-501
Cow position: chr28:29850835-29850629 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 141, 0

Conread position: 298-501
Cow position: chr28:8304228-8304435 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 41, 60

Conread position: 301-543
Cow position: chr28:16879557-16879808 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 49

Conread position: 313-501
Cow position: chr28:30902122-30902314 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 25, 37

Show alignments to all cow chromosomes.