Cow genome map
| Conread name: | rspc030_i12.y1 |
| Conread position: | 1-492 |
| Cow position: | chr29:43328304-43328810 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 115 |
| Conread position: | 5-337 |
| Cow position: | chr29:11136216-11135881 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 5-431 |
| Cow position: | chr29:45005944-45005522 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 5-435 |
| Cow position: | chr29:4480502-4480062 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 5-435 |
| Cow position: | chr29:17607088-17607527 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 110 |
| Conread position: | 5-441 |
| Cow position: | chr29:5892522-5892962 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 5-480 |
| Cow position: | chr29:17109644-17110121 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 108 |
| Conread position: | 5-495 |
| Cow position: | chr29:40763999-40763515 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 5-498 |
| Cow position: | chr29:35501973-35501481 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 5-499 |
| Cow position: | chr29:36530536-36531051 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 5-501 |
| Cow position: | chr29:19761947-19762450 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 251 |
| Conread position: | 5-501 |
| Cow position: | chr29:24952358-24952874 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 5-507 |
| Cow position: | chr29:26616064-26615544 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 6-499 |
| Cow position: | chr29:20626250-20626755 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 6-501 |
| Cow position: | chr29:40117244-40117752 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 101 |
| Conread position: | 7-501 |
| Cow position: | chr29:35291772-35292273 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 7-502 |
| Cow position: | chr29:10653013-10653510 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 115 |
| Conread position: | 8-499 |
| Cow position: | chr29:15940963-15940472 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 216 |
| Conread position: | 8-501 |
| Cow position: | chr29:28195841-28195346 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 183 |
| Conread position: | 13-491 |
| Cow position: | chr29:29056863-29057353 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 102 |
| Conread position: | 39-500 |
| Cow position: | chr29:34360082-34359640 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 315 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 60-501 |
| Cow position: | chr29:41530581-41531038 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 61-437 |
| Cow position: | chr29:4367453-4367838 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 64-501 |
| Cow position: | chr29:12679889-12680345 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 65-392 |
| Cow position: | chr29:40165978-40166312 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 65-450 |
| Cow position: | chr29:9911913-9912302 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 187, 86 |
| Conread position: | 67-386 |
| Cow position: | chr29:5099024-5098704 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 69-501 |
| Cow position: | chr29:18021935-18021515 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 73-446 |
| Cow position: | chr29:8926715-8926341 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 73-499 |
| Cow position: | chr29:22613179-22613606 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 180, 23 |
| Conread position: | 73-500 |
| Cow position: | chr29:29769602-29769168 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 73-501 |
| Cow position: | chr29:22162509-22162077 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 103 |
| Conread position: | 74-440 |
| Cow position: | chr29:7956239-7955876 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 78-407 |
| Cow position: | chr29:11562363-11562696 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 78-487 |
| Cow position: | chr29:1556681-1557100 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 288 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 163, 94 |
| Conread position: | 79-492 |
| Cow position: | chr29:18735893-18735471 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 82-501 |
| Cow position: | chr29:25737664-25737232 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 93-501 |
| Cow position: | chr29:34773964-34773562 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 93-537 |
| Cow position: | chr29:19949073-19949527 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 108-402 |
| Cow position: | chr29:868550-868852 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 115-437 |
| Cow position: | chr29:463868-463539 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 121-501 |
| Cow position: | chr29:709331-708963 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 41 |
| Conread position: | 127-501 |
| Cow position: | chr29:26259273-26259663 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 137-435 |
| Cow position: | chr29:27588727-27589034 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 137-501 |
| Cow position: | chr29:26275421-26275788 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 105, 87 |
| Conread position: | 139-420 |
| Cow position: | chr29:5186689-5186397 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 108, 90 |
| Conread position: | 145-501 |
| Cow position: | chr29:41113045-41112703 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 155, 25 |
| Conread position: | 147-392 |
| Cow position: | chr29:39329780-39329535 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 106, 120 |
| Conread position: | 147-501 |
| Cow position: | chr29:31674444-31674818 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 107, 120 |
| Conread position: | 157-420 |
| Cow position: | chr29:23244057-23243782 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 6, 173 |
| Conread position: | 206-503 |
| Cow position: | chr29:34359107-34358790 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 155 |
| Conread position: | 223-543 |
| Cow position: | chr29:1007706-1008045 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 240-500 |
| Cow position: | chr29:21665999-21666272 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 244-503 |
| Cow position: | chr29:32197622-32197883 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 258-501 |
| Cow position: | chr29:36952371-36952125 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 264-499 |
| Cow position: | chr29:44139311-44139060 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 132 |
| Conread position: | 264-501 |
| Cow position: | chr29:38980136-38979893 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 133 |
| Conread position: | 269-543 |
| Cow position: | chr29:43441555-43441277 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 87 |
| Conread position: | 270-493 |
| Cow position: | chr29:742700-742491 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 286-500 |
| Cow position: | chr29:7624141-7624351 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 292-496 |
| Cow position: | chr29:23825242-23825030 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 111, 102 |
| Conread position: | 292-504 |
| Cow position: | chr29:17804502-17804720 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 299-496 |
| Cow position: | chr29:22723576-22723778 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 301-542 |
| Cow position: | chr29:7290753-7290994 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 311-501 |
| Cow position: | chr29:36781317-36781123 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
Show alignments to all cow chromosomes.