Cow genome map

Conread name: rspc030_i12.y1

Conread position: 2-501
Cow position: chr4:3687589-3688109 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 8

Conread position: 2-501
Cow position: chr4:48485657-48486176 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 5-359
Cow position: chr4:24458433-24458073 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 98

Conread position: 5-400
Cow position: chr4:51898668-51899076 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 403

Conread position: 5-407
Cow position: chr4:16799522-16799108 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 279
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 197, 94

Conread position: 5-427
Cow position: chr4:12903483-12903919 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 5-435
Cow position: chr4:3850223-3850657 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 92

Conread position: 5-435
Cow position: chr4:7704643-7704219 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 284
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 111

Conread position: 5-437
Cow position: chr4:53100472-53100909 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 114

Conread position: 5-440
Cow position: chr4:11872246-11871811 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 109

Conread position: 5-446
Cow position: chr4:9815683-9815232 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 5-485
Cow position: chr4:68387461-68387952 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 93

Conread position: 5-486
Cow position: chr4:21392131-21391658 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 43

Conread position: 5-496
Cow position: chr4:42424134-42423630 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 5-498
Cow position: chr4:5610403-5609914 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 108

Conread position: 5-499
Cow position: chr4:275132-275622 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 96

Conread position: 5-499
Cow position: chr4:40414965-40414450 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 146

Conread position: 5-500
Cow position: chr4:21531963-21531461 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 44

Conread position: 5-500
Cow position: chr4:53207974-53208462 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 43

Conread position: 5-501
Cow position: chr4:4085463-4084928 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 11

Conread position: 5-501
Cow position: chr4:20328046-20327543 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 5-501
Cow position: chr4:51850865-51851392 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 106

Conread position: 5-501
Cow position: chr4:61897866-61897372 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 81

Conread position: 5-532
Cow position: chr4:4319476-4318943 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 79

Conread position: 6-390
Cow position: chr4:39231856-39231460 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 108

Conread position: 6-506
Cow position: chr4:33971229-33970719 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 7-336
Cow position: chr4:22215988-22215646 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 109

Conread position: 7-337
Cow position: chr4:2422252-2422584 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 105

Conread position: 7-407
Cow position: chr4:24002301-24001889 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 107

Conread position: 7-437
Cow position: chr4:509230-508801 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 104

Conread position: 7-501
Cow position: chr4:21064701-21065205 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 100

Conread position: 7-501
Cow position: chr4:56240178-56239684 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 108

Conread position: 9-480
Cow position: chr4:66256356-66256841 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 321
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 35, 53

Conread position: 12-528
Cow position: chr4:37915656-37915132 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 80

Conread position: 14-420
Cow position: chr4:38952234-38952644 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 87

Conread position: 15-434
Cow position: chr4:20603-21017 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 279
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 21, 69

Conread position: 22-444
Cow position: chr4:23599856-23600280 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 89

Conread position: 43-501
Cow position: chr4:54937594-54938060 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 159

Conread position: 45-453
Cow position: chr4:36730900-36731312 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 65

Conread position: 48-403
Cow position: chr4:45775628-45775264 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 241
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 70, 54

Conread position: 53-510
Cow position: chr4:3340670-3341144 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 319
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 203, 5

Conread position: 55-446
Cow position: chr4:7847547-7847163 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 254
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 161, 30

Conread position: 58-391
Cow position: chr4:44451253-44451578 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 214
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 147, 108

Conread position: 59-381
Cow position: chr4:20298993-20299326 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 52

Conread position: 64-501
Cow position: chr4:59785045-59785500 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 47

Conread position: 65-337
Cow position: chr4:19438188-19438473 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 191, 105

Conread position: 65-495
Cow position: chr4:28772337-28771895 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 45

Conread position: 66-391
Cow position: chr4:46550115-46550442 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 44

Conread position: 66-427
Cow position: chr4:47348563-47348924 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 52, 44

Conread position: 71-453
Cow position: chr4:19699835-19700217 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 227

Conread position: 71-508
Cow position: chr4:8769846-8770281 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 292
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 26

Conread position: 80-392
Cow position: chr4:49089539-49089840 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 37, 30

Conread position: 81-471
Cow position: chr4:62921111-62920726 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 264
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 156, 70

Conread position: 84-445
Cow position: chr4:7808327-7808687 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 260
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 13

Conread position: 86-444
Cow position: chr4:58881215-58880849 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 11

Conread position: 88-423
Cow position: chr4:21233118-21232779 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 62

Conread position: 88-501
Cow position: chr4:29291275-29291686 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 22

Conread position: 90-501
Cow position: chr4:26659060-26659480 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 294
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 29, 20

Conread position: 103-337
Cow position: chr4:19463258-19463504 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 15, 7

Conread position: 108-536
Cow position: chr4:36290379-36290837 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 310
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 441

Conread position: 114-500
Cow position: chr4:59277701-59277295 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 260

Conread position: 118-501
Cow position: chr4:38935141-38935538 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 60

Conread position: 129-446
Cow position: chr4:51768906-51769219 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 43

Conread position: 129-530
Cow position: chr4:38944471-38944048 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 290
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 101, 232

Conread position: 135-393
Cow position: chr4:11331889-11332161 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 22

Conread position: 136-501
Cow position: chr4:13344342-13344716 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 26, 119

Conread position: 136-501
Cow position: chr4:68805828-68806183 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 248
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 265, 53

Conread position: 138-446
Cow position: chr4:65175341-65175030 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 202
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 124

Conread position: 138-533
Cow position: chr4:17774547-17774153 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 279
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 116, 7

Conread position: 156-501
Cow position: chr4:45077252-45076899 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 239
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 133, 27

Conread position: 159-501
Cow position: chr4:3421447-3421804 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 253
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 131, 95

Conread position: 160-501
Cow position: chr4:34022766-34022406 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 250
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 94, 202

Conread position: 169-435
Cow position: chr4:59377743-59378015 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 85

Conread position: 174-446
Cow position: chr4:19501249-19500977 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 68, 85

Conread position: 187-501
Cow position: chr4:48409418-48409105 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 55, 63

Conread position: 188-499
Cow position: chr4:19118855-19119197 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 226
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 192-501
Cow position: chr4:20027248-20026925 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 29, 66

Conread position: 193-434
Cow position: chr4:54927586-54927335 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 167

Conread position: 204-501
Cow position: chr4:52832153-52831835 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 59

Conread position: 209-427
Cow position: chr4:48396924-48396698 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 76

Conread position: 258-501
Cow position: chr4:60719022-60719272 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 172

Conread position: 264-440
Cow position: chr4:19323901-19324085 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 26, 94

Conread position: 264-501
Cow position: chr4:65463568-65463333 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 78

Conread position: 267-499
Cow position: chr4:59002202-59001960 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 99

Conread position: 290-492
Cow position: chr4:38210014-38209804 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 147, 0

Conread position: 299-498
Cow position: chr4:44903264-44903461 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 156, 62

Conread position: 304-501
Cow position: chr4:21506981-21506786 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 46

Show alignments to all cow chromosomes.