Cow genome map

Conread name: rspc030_i12.y1

Conread position: 4-397
Cow position: chr5:64321448-64321855 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 108

Conread position: 4-431
Cow position: chr5:67932766-67932337 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 297
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 37, 100

Conread position: 5-295
Cow position: chr5:72564458-72564755 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 43, 33

Conread position: 5-391
Cow position: chr5:5111378-5110979 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 109

Conread position: 5-392
Cow position: chr5:32697098-32696727 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 43

Conread position: 5-419
Cow position: chr5:20407959-20407558 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 292
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 113, 26

Conread position: 5-427
Cow position: chr5:50821487-50821914 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 109

Conread position: 5-436
Cow position: chr5:29827752-29828186 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 109

Conread position: 5-492
Cow position: chr5:56523873-56524368 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 5-492
Cow position: chr5:65752558-65753066 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 77

Conread position: 5-500
Cow position: chr5:27154723-27155216 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 5-501
Cow position: chr5:3582278-3582770 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 332
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 30, 61

Conread position: 5-501
Cow position: chr5:14314222-14314731 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 17

Conread position: 5-501
Cow position: chr5:15363592-15364085 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 281

Conread position: 5-501
Cow position: chr5:17087331-17086802 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 279

Conread position: 5-501
Cow position: chr5:26467321-26467842 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 61

Conread position: 5-501
Cow position: chr5:29903823-29903328 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 128

Conread position: 5-501
Cow position: chr5:30276394-30276902 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 87

Conread position: 5-501
Cow position: chr5:43923450-43922956 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 5-501
Cow position: chr5:57935414-57934905 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 59

Conread position: 5-501
Cow position: chr5:62172105-62172613 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 121

Conread position: 5-501
Cow position: chr5:66338785-66339288 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 342
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 19, 103

Conread position: 5-501
Cow position: chr5:74643962-74643469 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 96

Conread position: 6-392
Cow position: chr5:58793914-58793511 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 8

Conread position: 6-446
Cow position: chr5:21828556-21829017 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 116

Conread position: 6-500
Cow position: chr5:45845993-45845476 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 72

Conread position: 6-501
Cow position: chr5:9894424-9893910 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 106

Conread position: 6-501
Cow position: chr5:44848311-44847812 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 338
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 48, 58

Conread position: 7-408
Cow position: chr5:41609015-41609396 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 272
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 282, 41

Conread position: 7-414
Cow position: chr5:66366235-66366627 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 281
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 47, 91

Conread position: 7-436
Cow position: chr5:4710440-4710012 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 285
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 46, 93

Conread position: 7-501
Cow position: chr5:65941551-65941035 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 21

Conread position: 7-529
Cow position: chr5:30302599-30303126 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 107

Conread position: 7-531
Cow position: chr5:16894068-16893532 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 41

Conread position: 8-335
Cow position: chr5:27015394-27015719 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 67

Conread position: 13-501
Cow position: chr5:66257352-66257849 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 98

Conread position: 21-501
Cow position: chr5:21617170-21617670 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 151

Conread position: 30-499
Cow position: chr5:12352054-12351599 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 96

Conread position: 37-501
Cow position: chr5:64176388-64175915 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 17

Conread position: 38-498
Cow position: chr5:34049845-34050320 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 313
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 80, 72

Conread position: 48-295
Cow position: chr5:26370453-26370688 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 172, 44

Conread position: 48-407
Cow position: chr5:31640173-31640536 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 169

Conread position: 51-386
Cow position: chr5:65601209-65601547 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 67, 59

Conread position: 60-433
Cow position: chr5:27306076-27306441 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 266
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 19

Conread position: 60-446
Cow position: chr5:35684692-35685085 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 50

Conread position: 60-499
Cow position: chr5:30253503-30253953 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 37

Conread position: 64-501
Cow position: chr5:40109263-40109699 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 46

Conread position: 64-501
Cow position: chr5:69337594-69338029 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 24

Conread position: 65-435
Cow position: chr5:37646789-37646405 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 46

Conread position: 65-499
Cow position: chr5:72903461-72903027 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 293
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 53, 37

Conread position: 71-435
Cow position: chr5:43992094-43992463 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 254
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 46, 39

Conread position: 72-539
Cow position: chr5:57074565-57074086 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 38

Conread position: 73-501
Cow position: chr5:56070624-56071073 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 34

Conread position: 78-435
Cow position: chr5:25495562-25495219 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 32

Conread position: 79-534
Cow position: chr5:44447112-44446629 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 424

Conread position: 81-437
Cow position: chr5:7723451-7723806 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 232
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 132, 16

Conread position: 81-499
Cow position: chr5:56028751-56028332 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 16

Conread position: 84-407
Cow position: chr5:62142452-62142787 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 34, 26

Conread position: 89-435
Cow position: chr5:35969329-35969671 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 21

Conread position: 89-501
Cow position: chr5:4280251-4280659 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 279
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 8

Conread position: 92-290
Cow position: chr5:63185464-63185268 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 27, 18

Conread position: 95-507
Cow position: chr5:50943362-50942939 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 208

Conread position: 107-407
Cow position: chr5:57575569-57575884 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 6, 301

Conread position: 108-501
Cow position: chr5:7044905-7044491 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 254

Conread position: 115-541
Cow position: chr5:69461147-69461587 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 50

Conread position: 118-435
Cow position: chr5:61810608-61810910 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 217
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 129, 42

Conread position: 118-541
Cow position: chr5:46512951-46512511 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 246

Conread position: 127-436
Cow position: chr5:62638730-62639044 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 217
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 136, 35

Conread position: 127-472
Cow position: chr5:6286602-6286263 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 46

Conread position: 136-435
Cow position: chr5:30950086-30949777 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 114, 133

Conread position: 136-435
Cow position: chr5:56317128-56317428 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 99, 117

Conread position: 136-501
Cow position: chr5:56014568-56014937 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 155, 36

Conread position: 137-482
Cow position: chr5:65967897-65967547 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 245
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 155, 130

Conread position: 137-501
Cow position: chr5:55955740-55956125 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 259
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 117, 82

Conread position: 145-407
Cow position: chr5:46426008-46425744 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 174
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 155, 25

Conread position: 147-501
Cow position: chr5:47696598-47696245 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 240
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 110, 39

Conread position: 147-502
Cow position: chr5:12673620-12673264 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 249
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 42

Conread position: 160-437
Cow position: chr5:20422325-20422052 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 193
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 131, 30

Conread position: 161-501
Cow position: chr5:56877343-56877685 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 89, 68

Conread position: 165-431
Cow position: chr5:64027149-64026884 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 86, 131

Conread position: 168-500
Cow position: chr5:72951701-72952038 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 34, 197

Conread position: 172-378
Cow position: chr5:991332-991546 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 71, 0

Conread position: 172-499
Cow position: chr5:18288995-18289331 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 224
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 136

Conread position: 173-501
Cow position: chr5:22666960-22667285 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 140, 80

Conread position: 175-508
Cow position: chr5:41713170-41713511 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 14, 70

Conread position: 176-436
Cow position: chr5:44726456-44726194 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 171
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 75, 126

Conread position: 178-501
Cow position: chr5:49474670-49474339 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 64, 10

Conread position: 196-502
Cow position: chr5:60183691-60184015 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 54, 168

Conread position: 214-501
Cow position: chr5:17555123-17554820 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 59

Conread position: 240-501
Cow position: chr5:59627035-59626757 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 52, 9

Conread position: 258-501
Cow position: chr5:63192786-63192539 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 34, 100

Conread position: 266-501
Cow position: chr5:26549178-26548928 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 266-501
Cow position: chr5:51065495-51065730 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 75

Conread position: 278-501
Cow position: chr5:17104835-17105060 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 72

Conread position: 287-501
Cow position: chr5:12434535-12434750 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 114, 16

Conread position: 287-501
Cow position: chr5:69099711-69099934 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 140, 0

Conread position: 290-499
Cow position: chr5:50824586-50824796 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 60

Conread position: 292-501
Cow position: chr5:22795213-22795421 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 111, 68

Conread position: 308-492
Cow position: chr5:46704287-46704094 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 130, 0

Conread position: 313-501
Cow position: chr5:75228182-75227998 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 90, 81

Conread position: 349-501
Cow position: chr5:29599493-29599337 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 0

Show alignments to all cow chromosomes.