Cow genome map

Conread name: rspc030_i12.y1

Conread position: 5-378
Cow position: chr6:1944443-1944809 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 97

Conread position: 5-386
Cow position: chr6:60859590-60859197 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 299

Conread position: 5-391
Cow position: chr6:28811282-28810889 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 265
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 43, 110

Conread position: 5-437
Cow position: chr6:24004260-24004691 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 295
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 43, 102

Conread position: 5-439
Cow position: chr6:12550981-12551427 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 96

Conread position: 5-455
Cow position: chr6:10176585-10176131 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 93

Conread position: 5-492
Cow position: chr6:9008894-9008407 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 49

Conread position: 5-495
Cow position: chr6:13688098-13687594 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 167

Conread position: 5-495
Cow position: chr6:32121624-32122117 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 109

Conread position: 5-498
Cow position: chr6:45690896-45690393 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 112

Conread position: 5-499
Cow position: chr6:12337698-12338216 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 5-500
Cow position: chr6:15305302-15305798 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 35

Conread position: 5-501
Cow position: chr6:16699975-16700482 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 106

Conread position: 5-501
Cow position: chr6:17414740-17414222 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 111

Conread position: 5-501
Cow position: chr6:26728813-26728316 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 5-501
Cow position: chr6:32867493-32866993 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 109

Conread position: 5-501
Cow position: chr6:49398904-49398401 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 110

Conread position: 5-508
Cow position: chr6:46465541-46466053 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 177

Conread position: 6-429
Cow position: chr6:4864824-4864400 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 283
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 95

Conread position: 6-445
Cow position: chr6:54867226-54867678 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 124

Conread position: 7-499
Cow position: chr6:35725807-35726316 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 318
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 41, 84

Conread position: 7-501
Cow position: chr6:17557090-17557603 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 330
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 41, 95

Conread position: 7-508
Cow position: chr6:10106285-10105748 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 111

Conread position: 9-500
Cow position: chr6:54132540-54133038 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 44

Conread position: 12-501
Cow position: chr6:22332678-22332167 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 316
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 407

Conread position: 36-533
Cow position: chr6:52478677-52478150 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 22

Conread position: 37-500
Cow position: chr6:31535823-31535346 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 43-435
Cow position: chr6:9736884-9736508 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 54

Conread position: 45-435
Cow position: chr6:54991235-54990848 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 52

Conread position: 45-501
Cow position: chr6:38853901-38853428 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 65

Conread position: 48-483
Cow position: chr6:26915090-26915538 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 125

Conread position: 49-420
Cow position: chr6:20098203-20097821 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 61

Conread position: 51-439
Cow position: chr6:13040215-13040595 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 60

Conread position: 60-427
Cow position: chr6:60350527-60350147 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 50

Conread position: 61-337
Cow position: chr6:9322932-9323204 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 57, 49

Conread position: 61-501
Cow position: chr6:19401635-19402073 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 302
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 158, 104

Conread position: 63-501
Cow position: chr6:49422001-49421568 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 299
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 53, 34

Conread position: 64-501
Cow position: chr6:60144401-60143971 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 298
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 229, 102

Conread position: 65-499
Cow position: chr6:46860390-46859944 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 32

Conread position: 66-502
Cow position: chr6:38207717-38207257 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 31

Conread position: 66-506
Cow position: chr6:4383271-4383707 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 31

Conread position: 67-407
Cow position: chr6:23248184-23247841 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 43

Conread position: 68-437
Cow position: chr6:55282509-55282138 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 29

Conread position: 70-499
Cow position: chr6:8965872-8966314 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 36

Conread position: 71-437
Cow position: chr6:28977248-28976885 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 28

Conread position: 71-499
Cow position: chr6:36202611-36203047 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 86

Conread position: 71-499
Cow position: chr6:44194762-44194330 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 93

Conread position: 72-449
Cow position: chr6:53651824-53652205 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 39

Conread position: 72-501
Cow position: chr6:53460787-53460343 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 25

Conread position: 73-294
Cow position: chr6:1889296-1889084 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 24

Conread position: 73-499
Cow position: chr6:35435788-35436213 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 285
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 98

Conread position: 77-447
Cow position: chr6:6400739-6401113 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 9

Conread position: 83-501
Cow position: chr6:53025003-53024583 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 298
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 35, 27

Conread position: 86-436
Cow position: chr6:528478-528130 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 233
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 32, 20

Conread position: 86-501
Cow position: chr6:10400097-10399680 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 292
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 24

Conread position: 93-502
Cow position: chr6:21456885-21456448 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 23

Conread position: 94-501
Cow position: chr6:29484897-29485311 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 18

Conread position: 103-529
Cow position: chr6:47574719-47575145 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 70

Conread position: 116-501
Cow position: chr6:54936405-54936785 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 257
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 25

Conread position: 128-501
Cow position: chr6:62669710-62670099 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 263
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 30

Conread position: 129-453
Cow position: chr6:48112045-48112366 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 110, 45

Conread position: 136-399
Cow position: chr6:61608355-61608628 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 269

Conread position: 136-501
Cow position: chr6:7128552-7128176 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 257
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 106, 24

Conread position: 136-504
Cow position: chr6:60739863-60740241 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 253
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 85, 36

Conread position: 140-435
Cow position: chr6:46283146-46282851 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 149, 43

Conread position: 153-500
Cow position: chr6:60118011-60118369 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 21

Conread position: 155-471
Cow position: chr6:38640094-38640432 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 229
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 86, 219

Conread position: 156-495
Cow position: chr6:29000058-28999735 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 211, 30

Conread position: 168-358
Cow position: chr6:37376647-37376438 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 170-439
Cow position: chr6:50975936-50976205 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 119, 73

Conread position: 170-499
Cow position: chr6:7119732-7119404 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 220
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 118, 72

Conread position: 170-501
Cow position: chr6:23402111-23401767 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 225
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 49

Conread position: 174-501
Cow position: chr6:22850363-22850024 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 227
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 42, 83

Conread position: 182-501
Cow position: chr6:59603317-59602987 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 73

Conread position: 196-420
Cow position: chr6:66375426-66375195 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 205

Conread position: 214-446
Cow position: chr6:23466107-23465871 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 23, 157

Conread position: 219-495
Cow position: chr6:694220-693923 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 75, 137

Conread position: 219-500
Cow position: chr6:17068722-17068428 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 20, 278

Conread position: 220-447
Cow position: chr6:29248419-29248640 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 80

Conread position: 222-501
Cow position: chr6:18118122-18117823 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 204
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 143

Conread position: 224-501
Cow position: chr6:50504389-50504684 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 32

Conread position: 240-541
Cow position: chr6:60468190-60468497 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 8

Conread position: 245-501
Cow position: chr6:2078863-2078588 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 187
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 258-498
Cow position: chr6:37466071-37466302 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 118, 36

Conread position: 264-500
Cow position: chr6:48097626-48097376 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 234

Conread position: 267-501
Cow position: chr6:30023872-30024105 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 77, 31

Conread position: 269-501
Cow position: chr6:53546016-53546257 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 31, 130

Conread position: 313-501
Cow position: chr6:23938091-23938279 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.