Cow genome map

Conread name: rspc030_i12.y1

Conread position: 4-371
Cow position: chr8:19998401-19998024 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 99

Conread position: 4-501
Cow position: chr8:58519985-58520484 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 344
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 44, 9

Conread position: 5-299
Cow position: chr8:44000799-44000508 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 49

Conread position: 5-337
Cow position: chr8:20355077-20354747 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 98

Conread position: 5-399
Cow position: chr8:50708731-50709141 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 406

Conread position: 5-436
Cow position: chr8:10399997-10400422 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 55

Conread position: 5-445
Cow position: chr8:4924247-4924702 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 5-446
Cow position: chr8:40033130-40032684 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 106

Conread position: 5-453
Cow position: chr8:37882008-37882485 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 317
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 205

Conread position: 5-472
Cow position: chr8:29026937-29026481 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 326
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 36, 112

Conread position: 5-498
Cow position: chr8:61538157-61537653 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 157

Conread position: 5-499
Cow position: chr8:32621313-32620782 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 109

Conread position: 5-500
Cow position: chr8:10456139-10456660 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 358
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 43, 185

Conread position: 5-501
Cow position: chr8:1303594-1304105 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 23

Conread position: 5-501
Cow position: chr8:10337344-10336844 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 109

Conread position: 5-501
Cow position: chr8:10786161-10786655 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 337
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 8

Conread position: 5-501
Cow position: chr8:18057408-18057928 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 359
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 331

Conread position: 5-501
Cow position: chr8:32132936-32133463 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 5-501
Cow position: chr8:48528269-48527765 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 5-501
Cow position: chr8:58636454-58636930 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 345
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 8

Conread position: 5-501
Cow position: chr8:59250414-59250923 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 32

Conread position: 5-501
Cow position: chr8:60454880-60455376 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 322
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 23, 168

Conread position: 5-511
Cow position: chr8:33407148-33406643 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 49

Conread position: 5-539
Cow position: chr8:10081612-10082123 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 5-543
Cow position: chr8:24372026-24371486 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 43

Conread position: 6-337
Cow position: chr8:38464695-38465025 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 99

Conread position: 6-396
Cow position: chr8:53363160-53362773 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 48

Conread position: 6-435
Cow position: chr8:46235387-46235819 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 62

Conread position: 6-435
Cow position: chr8:58417374-58417806 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 293
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 42, 97

Conread position: 6-446
Cow position: chr8:59766295-59766728 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 290
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 94

Conread position: 6-499
Cow position: chr8:38572592-38572073 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 378

Conread position: 6-533
Cow position: chr8:54051996-54052529 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 58

Conread position: 7-407
Cow position: chr8:43168339-43167932 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 41, 104

Conread position: 7-446
Cow position: chr8:42113120-42112691 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 218

Conread position: 7-501
Cow position: chr8:16938764-16938282 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 108

Conread position: 7-528
Cow position: chr8:48513311-48512798 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 28

Conread position: 8-498
Cow position: chr8:10298049-10297562 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 72

Conread position: 8-500
Cow position: chr8:17199750-17199232 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 95

Conread position: 10-502
Cow position: chr8:55716444-55716951 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 104

Conread position: 13-392
Cow position: chr8:6531118-6531494 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 88

Conread position: 16-501
Cow position: chr8:52926025-52925533 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 100

Conread position: 17-501
Cow position: chr8:36375816-36375323 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 8

Conread position: 26-435
Cow position: chr8:28987425-28987823 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 80

Conread position: 30-500
Cow position: chr8:10970540-10971033 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 80

Conread position: 30-501
Cow position: chr8:19642183-19642666 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 80

Conread position: 59-499
Cow position: chr8:43113074-43112654 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 297
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 228, 47

Conread position: 61-444
Cow position: chr8:42794566-42794189 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 49

Conread position: 64-391
Cow position: chr8:9131180-9130848 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 227
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 54, 46

Conread position: 64-495
Cow position: chr8:37122718-37123140 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 71-390
Cow position: chr8:16653160-16653496 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 47, 39

Conread position: 71-399
Cow position: chr8:8987183-8986858 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 226
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 47, 26

Conread position: 71-440
Cow position: chr8:18207393-18207014 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 252
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 46, 39

Conread position: 75-495
Cow position: chr8:18081294-18081721 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 293
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 43, 35

Conread position: 78-500
Cow position: chr8:20108022-20107596 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 19

Conread position: 81-439
Cow position: chr8:29625200-29624841 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 81

Conread position: 90-407
Cow position: chr8:5225264-5224949 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 143, 67

Conread position: 90-501
Cow position: chr8:54302808-54303211 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 275
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 164, 80

Conread position: 93-501
Cow position: chr8:39592361-39592790 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 287
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 25, 96

Conread position: 100-392
Cow position: chr8:57042040-57041749 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 80, 184

Conread position: 103-500
Cow position: chr8:57406550-57406966 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 269
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 153, 14

Conread position: 107-429
Cow position: chr8:16031783-16031461 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 70

Conread position: 108-407
Cow position: chr8:24329057-24328759 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 10, 54

Conread position: 115-420
Cow position: chr8:6485138-6484822 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 62

Conread position: 119-433
Cow position: chr8:26304600-26304269 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 213
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 119-500
Cow position: chr8:4500288-4500686 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 243

Conread position: 122-491
Cow position: chr8:23018709-23018326 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 274
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 33, 136

Conread position: 136-457
Cow position: chr8:43439425-43439759 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 107, 125

Conread position: 136-501
Cow position: chr8:12213830-12214198 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 70

Conread position: 136-502
Cow position: chr8:61128887-61128501 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 260
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 73, 44

Conread position: 136-508
Cow position: chr8:19980261-19979881 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 157, 116

Conread position: 137-501
Cow position: chr8:6951347-6951716 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 257
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 160, 119

Conread position: 138-439
Cow position: chr8:28313904-28313594 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 216
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 119, 13

Conread position: 141-540
Cow position: chr8:37636167-37635759 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 103, 51

Conread position: 146-435
Cow position: chr8:2931870-2931577 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 183, 208

Conread position: 152-446
Cow position: chr8:4649056-4648751 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 202
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 12

Conread position: 152-500
Cow position: chr8:58058573-58058939 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 244
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 26, 12

Conread position: 153-438
Cow position: chr8:19284334-19284625 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 101, 53

Conread position: 157-501
Cow position: chr8:40280524-40280886 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 244
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 130, 190

Conread position: 162-507
Cow position: chr8:55897964-55897613 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 130, 72

Conread position: 166-501
Cow position: chr8:19717250-19716917 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 126, 89

Conread position: 171-472
Cow position: chr8:53633381-53633060 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 43, 256

Conread position: 172-500
Cow position: chr8:55884823-55885170 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 232
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 16

Conread position: 172-501
Cow position: chr8:39807445-39807799 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 249
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 118, 0

Conread position: 188-426
Cow position: chr8:7465210-7465438 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 50

Conread position: 188-501
Cow position: chr8:37391490-37391159 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 227
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 110, 61

Conread position: 192-491
Cow position: chr8:33640234-33640553 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 65, 7

Conread position: 208-501
Cow position: chr8:31985153-31985457 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 79, 9

Conread position: 223-446
Cow position: chr8:17167468-17167705 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 50

Conread position: 223-449
Cow position: chr8:20320400-20320630 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 70, 20

Conread position: 225-543
Cow position: chr8:53552582-53552919 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 218
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 29, 175

Conread position: 235-501
Cow position: chr8:16957546-16957810 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 9, 62

Conread position: 240-501
Cow position: chr8:46082091-46082363 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 48, 9

Conread position: 245-498
Cow position: chr8:44449669-44449410 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 23

Conread position: 245-536
Cow position: chr8:32130164-32130471 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 261-501
Cow position: chr8:5437705-5437960 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 264-501
Cow position: chr8:26315547-26315305 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 58

Conread position: 289-500
Cow position: chr8:60339941-60339730 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 300-492
Cow position: chr8:37559121-37559314 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 121, 94

Show alignments to all cow chromosomes.