Cow genome map

Conread name: rspc030_i12.y1

Conread position: 2-501
Cow position: chr9:11299343-11299832 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 22

Conread position: 5-380
Cow position: chr9:36827461-36827106 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 270
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 113, 49

Conread position: 5-392
Cow position: chr9:48106761-48107157 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 269
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 36, 111

Conread position: 5-407
Cow position: chr9:9443236-9443657 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 41, 102

Conread position: 5-408
Cow position: chr9:32238741-32238324 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 286
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 36, 180

Conread position: 5-446
Cow position: chr9:21888525-21888075 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 109

Conread position: 5-453
Cow position: chr9:56773435-56772976 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 109

Conread position: 5-465
Cow position: chr9:64092042-64091563 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 66

Conread position: 5-488
Cow position: chr9:9552441-9551946 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 63

Conread position: 5-495
Cow position: chr9:19903408-19902939 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 331
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 142

Conread position: 5-499
Cow position: chr9:8637012-8636521 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 20

Conread position: 5-499
Cow position: chr9:18381216-18380711 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 110

Conread position: 5-500
Cow position: chr9:22443258-22443781 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 50

Conread position: 5-500
Cow position: chr9:34957696-34958210 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 96

Conread position: 5-501
Cow position: chr9:20579239-20579747 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 321
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 72

Conread position: 5-501
Cow position: chr9:21459799-21460312 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 111

Conread position: 5-501
Cow position: chr9:22318694-22318202 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 109

Conread position: 5-501
Cow position: chr9:28747169-28747677 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 5-501
Cow position: chr9:45285189-45285698 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 30

Conread position: 5-501
Cow position: chr9:50606597-50607089 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 168

Conread position: 6-386
Cow position: chr9:21030672-21030273 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 109

Conread position: 6-418
Cow position: chr9:23430794-23431214 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 60

Conread position: 6-437
Cow position: chr9:42445618-42446069 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 107

Conread position: 7-446
Cow position: chr9:44831703-44832148 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 94

Conread position: 8-476
Cow position: chr9:43871325-43870852 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 106

Conread position: 10-438
Cow position: chr9:4267642-4268069 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 81

Conread position: 13-501
Cow position: chr9:45141279-45141755 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 41

Conread position: 17-501
Cow position: chr9:13169331-13169824 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 7

Conread position: 30-542
Cow position: chr9:33100815-33101306 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 67

Conread position: 32-392
Cow position: chr9:10118337-10118700 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 253
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 81

Conread position: 40-480
Cow position: chr9:57896810-57897241 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 24

Conread position: 45-501
Cow position: chr9:26344673-26345121 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 52

Conread position: 51-500
Cow position: chr9:10011108-10010654 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 301
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 12, 35

Conread position: 54-480
Cow position: chr9:18072813-18073225 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 290
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 63

Conread position: 59-446
Cow position: chr9:18343020-18342638 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 48

Conread position: 64-501
Cow position: chr9:17871815-17872266 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 65-502
Cow position: chr9:20091330-20090900 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 45

Conread position: 71-492
Cow position: chr9:26278891-26279323 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 304
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 16

Conread position: 73-295
Cow position: chr9:58674025-58673800 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 44, 37

Conread position: 73-437
Cow position: chr9:52578249-52578622 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 256
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 170, 332

Conread position: 75-495
Cow position: chr9:56453615-56453193 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 36

Conread position: 78-501
Cow position: chr9:24887476-24887046 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 32

Conread position: 79-435
Cow position: chr9:34374652-34375008 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 18

Conread position: 89-447
Cow position: chr9:33598249-33597894 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 240
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 21

Conread position: 89-501
Cow position: chr9:34287062-34286639 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 21

Conread position: 111-420
Cow position: chr9:19493216-19493535 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 124, 40

Conread position: 119-438
Cow position: chr9:11319394-11319721 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 134, 42

Conread position: 129-501
Cow position: chr9:48628260-48627864 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 17, 116

Conread position: 136-446
Cow position: chr9:1938347-1938029 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 218
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 49

Conread position: 136-541
Cow position: chr9:53762922-53762502 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 397

Conread position: 137-501
Cow position: chr9:17799850-17799476 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 260
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 116, 20

Conread position: 147-501
Cow position: chr9:61303217-61302844 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 258
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 107, 259

Conread position: 160-501
Cow position: chr9:10650104-10650447 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 231
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 24

Conread position: 161-501
Cow position: chr9:4340970-4341315 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 129

Conread position: 164-536
Cow position: chr9:12910202-12910595 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 271
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 32, 81

Conread position: 168-541
Cow position: chr9:41728448-41728060 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 15

Conread position: 185-498
Cow position: chr9:54493299-54492982 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 108, 7

Conread position: 188-427
Cow position: chr9:60027370-60027121 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 54, 62

Conread position: 188-501
Cow position: chr9:25557138-25556824 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 102, 63

Conread position: 192-501
Cow position: chr9:5263669-5263345 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 62, 43

Conread position: 196-404
Cow position: chr9:49292981-49293196 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 58, 0

Conread position: 199-501
Cow position: chr9:3378906-3378603 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 204
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 35

Conread position: 206-435
Cow position: chr9:39011322-39011553 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 49

Conread position: 206-501
Cow position: chr9:43757692-43757385 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 92, 170

Conread position: 213-501
Cow position: chr9:8628775-8629071 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 196
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 18

Conread position: 240-495
Cow position: chr9:33584567-33584837 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 9

Conread position: 240-501
Cow position: chr9:6189256-6189522 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 9

Conread position: 240-501
Cow position: chr9:17840559-17840838 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 49, 15

Conread position: 245-501
Cow position: chr9:23955872-23956136 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 45, 107

Conread position: 261-543
Cow position: chr9:58131868-58132149 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 161, 29

Conread position: 277-501
Cow position: chr9:41785291-41785062 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 124

Conread position: 285-498
Cow position: chr9:57131560-57131342 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 14

Conread position: 288-500
Cow position: chr9:63361656-63361869 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 110, 106

Show alignments to all cow chromosomes.