Cow genome map
| Conread name: | rspc030_i12.y1 |
| Conread position: | 2-501 |
| Cow position: | chr9:11299343-11299832 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 22 |
| Conread position: | 5-380 |
| Cow position: | chr9:36827461-36827106 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 113, 49 |
| Conread position: | 5-392 |
| Cow position: | chr9:48106761-48107157 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 5-407 |
| Cow position: | chr9:9443236-9443657 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 5-408 |
| Cow position: | chr9:32238741-32238324 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 36, 180 |
| Conread position: | 5-446 |
| Cow position: | chr9:21888525-21888075 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 109 |
| Conread position: | 5-453 |
| Cow position: | chr9:56773435-56772976 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 5-465 |
| Cow position: | chr9:64092042-64091563 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 66 |
| Conread position: | 5-488 |
| Cow position: | chr9:9552441-9551946 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 5-495 |
| Cow position: | chr9:19903408-19902939 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 5-499 |
| Cow position: | chr9:8637012-8636521 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 5-499 |
| Cow position: | chr9:18381216-18380711 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 5-500 |
| Cow position: | chr9:22443258-22443781 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 5-500 |
| Cow position: | chr9:34957696-34958210 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 96 |
| Conread position: | 5-501 |
| Cow position: | chr9:20579239-20579747 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 5-501 |
| Cow position: | chr9:21459799-21460312 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 5-501 |
| Cow position: | chr9:22318694-22318202 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 5-501 |
| Cow position: | chr9:28747169-28747677 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 5-501 |
| Cow position: | chr9:45285189-45285698 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 30 |
| Conread position: | 5-501 |
| Cow position: | chr9:50606597-50607089 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 168 |
| Conread position: | 6-386 |
| Cow position: | chr9:21030672-21030273 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 6-418 |
| Cow position: | chr9:23430794-23431214 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 6-437 |
| Cow position: | chr9:42445618-42446069 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 107 |
| Conread position: | 7-446 |
| Cow position: | chr9:44831703-44832148 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 8-476 |
| Cow position: | chr9:43871325-43870852 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 10-438 |
| Cow position: | chr9:4267642-4268069 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 13-501 |
| Cow position: | chr9:45141279-45141755 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 41 |
| Conread position: | 17-501 |
| Cow position: | chr9:13169331-13169824 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 30-542 |
| Cow position: | chr9:33100815-33101306 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 67 |
| Conread position: | 32-392 |
| Cow position: | chr9:10118337-10118700 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 40-480 |
| Cow position: | chr9:57896810-57897241 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 45-501 |
| Cow position: | chr9:26344673-26345121 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 51-500 |
| Cow position: | chr9:10011108-10010654 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 301 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 54-480 |
| Cow position: | chr9:18072813-18073225 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 59-446 |
| Cow position: | chr9:18343020-18342638 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 64-501 |
| Cow position: | chr9:17871815-17872266 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 65-502 |
| Cow position: | chr9:20091330-20090900 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 45 |
| Conread position: | 71-492 |
| Cow position: | chr9:26278891-26279323 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 73-295 |
| Cow position: | chr9:58674025-58673800 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 73-437 |
| Cow position: | chr9:52578249-52578622 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 170, 332 |
| Conread position: | 75-495 |
| Cow position: | chr9:56453615-56453193 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 78-501 |
| Cow position: | chr9:24887476-24887046 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 32 |
| Conread position: | 79-435 |
| Cow position: | chr9:34374652-34375008 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 89-447 |
| Cow position: | chr9:33598249-33597894 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 89-501 |
| Cow position: | chr9:34287062-34286639 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 111-420 |
| Cow position: | chr9:19493216-19493535 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 124, 40 |
| Conread position: | 119-438 |
| Cow position: | chr9:11319394-11319721 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 134, 42 |
| Conread position: | 129-501 |
| Cow position: | chr9:48628260-48627864 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 136-446 |
| Cow position: | chr9:1938347-1938029 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 136-541 |
| Cow position: | chr9:53762922-53762502 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 397 |
| Conread position: | 137-501 |
| Cow position: | chr9:17799850-17799476 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 147-501 |
| Cow position: | chr9:61303217-61302844 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 107, 259 |
| Conread position: | 160-501 |
| Cow position: | chr9:10650104-10650447 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 161-501 |
| Cow position: | chr9:4340970-4341315 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 129 |
| Conread position: | 164-536 |
| Cow position: | chr9:12910202-12910595 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 168-541 |
| Cow position: | chr9:41728448-41728060 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 15 |
| Conread position: | 185-498 |
| Cow position: | chr9:54493299-54492982 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 7 |
| Conread position: | 188-427 |
| Cow position: | chr9:60027370-60027121 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 188-501 |
| Cow position: | chr9:25557138-25556824 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 102, 63 |
| Conread position: | 192-501 |
| Cow position: | chr9:5263669-5263345 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 196-404 |
| Cow position: | chr9:49292981-49293196 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 199-501 |
| Cow position: | chr9:3378906-3378603 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 206-435 |
| Cow position: | chr9:39011322-39011553 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 206-501 |
| Cow position: | chr9:43757692-43757385 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 170 |
| Conread position: | 213-501 |
| Cow position: | chr9:8628775-8629071 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 240-495 |
| Cow position: | chr9:33584567-33584837 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 240-501 |
| Cow position: | chr9:6189256-6189522 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 240-501 |
| Cow position: | chr9:17840559-17840838 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 245-501 |
| Cow position: | chr9:23955872-23956136 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 261-543 |
| Cow position: | chr9:58131868-58132149 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 161, 29 |
| Conread position: | 277-501 |
| Cow position: | chr9:41785291-41785062 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 124 |
| Conread position: | 285-498 |
| Cow position: | chr9:57131560-57131342 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 14 |
| Conread position: | 288-500 |
| Cow position: | chr9:63361656-63361869 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 110, 106 |
Show alignments to all cow chromosomes.