Cow genome map

Conread name: rspc031_h17.y1

Conread position: 1-384
Cow position:
Alignm length: 392
Alignm identity: 264
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 10

Conread position: 1-384
Cow position:
Alignm length: 393
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 6

Conread position: 2-170
Cow position:
Alignm length: 175
Alignm identity: 132
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 16, 9

Conread position: 2-174
Cow position:
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 10

Conread position: 2-211
Cow position:
Alignm length: 215
Alignm identity: 164
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 41, 15

Conread position: 2-218
Cow position:
Alignm length: 223
Alignm identity: 166
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 17, 9

Conread position: 2-245
Cow position:
Alignm length: 247
Alignm identity: 177
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 17, 10

Conread position: 2-299
Cow position:
Alignm length: 301
Alignm identity: 216
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 9, 16

Conread position: 2-317
Cow position:
Alignm length: 330
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 232

Conread position: 2-375
Cow position:
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 123

Conread position: 2-381
Cow position:
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 10

Conread position: 2-383
Cow position:
Alignm length: 388
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 37

Conread position: 2-383
Cow position:
Alignm length: 386
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 10

Conread position: 2-384
Cow position:
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 10

Conread position: 3-271
Cow position:
Alignm length: 279
Alignm identity: 190
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 17, 123

Conread position: 3-373
Cow position:
Alignm length: 377
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 123

Conread position: 3-375
Cow position:
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 125

Conread position: 3-378
Cow position:
Alignm length: 404
Alignm identity: 271
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 307

Conread position: 3-378
Cow position:
Alignm length: 408
Alignm identity: 273
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 123

Conread position: 3-379
Cow position:
Alignm length: 385
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 117

Conread position: 3-379
Cow position:
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 127

Conread position: 3-380
Cow position:
Alignm length: 414
Alignm identity: 274
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 316

Conread position: 3-380
Cow position:
Alignm length: 409
Alignm identity: 282
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 18, 123

Conread position: 3-383
Cow position:
Alignm length: 415
Alignm identity: 285
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 314

Conread position: 3-383
Cow position:
Alignm length: 394
Alignm identity: 273
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 16, 125

Conread position: 3-383
Cow position:
Alignm length: 393
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 187

Conread position: 3-384
Cow position:
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 123

Conread position: 3-384
Cow position:
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 124

Conread position: 3-384
Cow position:
Alignm length: 416
Alignm identity: 276
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 123

Conread position: 3-384
Cow position:
Alignm length: 417
Alignm identity: 279
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 18, 315

Conread position: 3-384
Cow position:
Alignm length: 406
Alignm identity: 269
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 123

Conread position: 3-384
Cow position:
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 127

Conread position: 3-384
Cow position:
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 127

Conread position: 5-380
Cow position:
Alignm length: 380
Alignm identity: 241
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 148, 19

Conread position: 5-384
Cow position:
Alignm length: 389
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 240

Conread position: 5-384
Cow position:
Alignm length: 396
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 125

Conread position: 6-340
Cow position:
Alignm length: 342
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 36

Conread position: 6-384
Cow position:
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 146

Conread position: 11-375
Cow position:
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 118

Conread position: 11-384
Cow position:
Alignm length: 383
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 77

Conread position: 12-368
Cow position:
Alignm length: 363
Alignm identity: 240
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 7

Conread position: 16-381
Cow position:
Alignm length: 371
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 9

Conread position: 17-196
Cow position:
Alignm length: 185
Alignm identity: 140
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 101

Conread position: 17-245
Cow position:
Alignm length: 234
Alignm identity: 174
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 27, 109

Conread position: 17-384
Cow position:
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 72

Conread position: 17-384
Cow position:
Alignm length: 379
Alignm identity: 245
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 23, 81

Conread position: 17-384
Cow position:
Alignm length: 374
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 17-384
Cow position:
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 67

Conread position: 17-384
Cow position:
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 38

Conread position: 19-195
Cow position:
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 98

Conread position: 19-319
Cow position:
Alignm length: 307
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 99

Conread position: 19-381
Cow position:
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 100

Conread position: 19-384
Cow position:
Alignm length: 369
Alignm identity: 259
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 99

Conread position: 21-239
Cow position:
Alignm length: 227
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 62

Conread position: 24-378
Cow position:
Alignm length: 361
Alignm identity: 247
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 18, 92

Conread position: 25-384
Cow position:
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 93

Conread position: 25-384
Cow position:
Alignm length: 363
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 93

Conread position: 27-313
Cow position:
Alignm length: 292
Alignm identity: 209
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 15, 78

Conread position: 27-374
Cow position:
Alignm length: 357
Alignm identity: 250
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 23, 98

Conread position: 27-381
Cow position:
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-381
Cow position:
Alignm length: 364
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-381
Cow position:
Alignm length: 359
Alignm identity: 253
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 23, 98

Conread position: 27-383
Cow position:
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 99

Conread position: 27-383
Cow position:
Alignm length: 366
Alignm identity: 259
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 15, 98

Conread position: 27-384
Cow position:
Alignm length: 366
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 26

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 98

Conread position: 27-384
Cow position:
Alignm length: 363
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 98

Conread position: 27-384
Cow position:
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 78

Conread position: 27-384
Cow position:
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 79

Conread position: 27-384
Cow position:
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 98

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 98

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 99

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position:
Alignm length: 369
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 99

Conread position: 27-384
Cow position:
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 38-283
Cow position:
Alignm length: 249
Alignm identity: 178
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 109, 79

Conread position: 38-378
Cow position:
Alignm length: 350
Alignm identity: 239
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 112, 43

Conread position: 38-379
Cow position:
Alignm length: 348
Alignm identity: 239
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 112, 56

Conread position: 38-384
Cow position:
Alignm length: 354
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 85

Conread position: 41-379
Cow position:
Alignm length: 341
Alignm identity: 224
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 301, 75

Conread position: 50-382
Cow position:
Alignm length: 346
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 57

Conread position: 50-384
Cow position:
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 73

Conread position: 50-384
Cow position:
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 73

Conread position: 50-384
Cow position:
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 37

Conread position: 51-384
Cow position:
Alignm length: 335
Alignm identity: 226
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 291, 72

Conread position: 56-384
Cow position:
Alignm length: 337
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 16, 69

Conread position: 58-382
Cow position:
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 51

Conread position: 60-384
Cow position:
Alignm length: 331
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 7

Conread position: 64-384
Cow position:
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 59

Conread position: 64-384
Cow position:
Alignm length: 321
Alignm identity: 222
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 68-383
Cow position:
Alignm length: 318
Alignm identity: 213
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 174, 19

Conread position: 72-377
Cow position:
Alignm length: 310
Alignm identity: 207
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 78, 19

Conread position: 93-384
Cow position:
Alignm length: 305
Alignm identity: 218
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 56, 30

Conread position: 96-383
Cow position:
Alignm length: 309
Alignm identity: 217
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 54, 27

Conread position: 97-384
Cow position:
Alignm length: 295
Alignm identity: 217
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 143, 26

Conread position: 116-384
Cow position:
Alignm length: 290
Alignm identity: 198
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 26

Conread position: 118-378
Cow position:
Alignm length: 268
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 118, 29

Conread position: 118-383
Cow position:
Alignm length: 281
Alignm identity: 196
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 180

Conread position: 118-383
Cow position:
Alignm length: 273
Alignm identity: 187
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 112, 29

Conread position: 119-384
Cow position:
Alignm length: 274
Alignm identity: 184
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 112, 23

Conread position: 134-382
Cow position:
Alignm length: 258
Alignm identity: 179
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 17, 6

Conread position: 135-383
Cow position:
Alignm length: 254
Alignm identity: 174
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 42

Conread position: 153-379
Cow position:
Alignm length: 230
Alignm identity: 169
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 81, 37

Conread position: 154-384
Cow position:
Alignm length: 240
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 135

Conread position: 154-384
Cow position:
Alignm length: 240
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 135

Conread position: 154-384
Cow position:
Alignm length: 240
Alignm identity: 170
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 12, 130

Conread position: 158-378
Cow position:
Alignm length: 225
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 22

Conread position: 159-378
Cow position:
Alignm length: 225
Alignm identity: 160
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 69, 131

Conread position: 161-331
Cow position:
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 129

Conread position: 161-376
Cow position:
Alignm length: 223
Alignm identity: 159
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 70, 134

Conread position: 161-378
Cow position:
Alignm length: 225
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 72, 126

Conread position: 161-378
Cow position:
Alignm length: 223
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 70, 42

Conread position: 161-378
Cow position:
Alignm length: 225
Alignm identity: 161
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 67, 130

Conread position: 161-378
Cow position:
Alignm length: 225
Alignm identity: 159
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 70, 130

Conread position: 161-378
Cow position:
Alignm length: 227
Alignm identity: 165
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 72, 130

Conread position: 161-378
Cow position:
Alignm length: 225
Alignm identity: 160
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 70, 128

Conread position: 161-381
Cow position:
Alignm length: 230
Alignm identity: 166
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 70, 130

Conread position: 161-382
Cow position:
Alignm length: 231
Alignm identity: 168
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 70, 130

Conread position: 161-382
Cow position:
Alignm length: 228
Alignm identity: 161
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 70, 131

Conread position: 161-384
Cow position:
Alignm length: 233
Alignm identity: 165
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position:
Alignm length: 233
Alignm identity: 171
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 70, 131

Conread position: 161-384
Cow position:
Alignm length: 231
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 77, 130

Conread position: 161-384
Cow position:
Alignm length: 233
Alignm identity: 168
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position:
Alignm length: 232
Alignm identity: 166
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position:
Alignm length: 231
Alignm identity: 159
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 77, 130

Conread position: 161-384
Cow position:
Alignm length: 231
Alignm identity: 160
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 70, 17

Conread position: 161-384
Cow position:
Alignm length: 232
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 60, 131

Conread position: 165-342
Cow position:
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 118

Conread position: 169-384
Cow position:
Alignm length: 224
Alignm identity: 162
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 61, 122

Conread position: 169-384
Cow position:
Alignm length: 224
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 123

Conread position: 215-384
Cow position:
Alignm length: 177
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 76

Conread position: 229-384
Cow position:
Alignm length: 158
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 43

Conread position: 247-384
Cow position:
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 38

Conread position: 252-384
Cow position:
Alignm length: 134
Alignm identity: 104
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 90, 33

Conread position: 258-384
Cow position:
Alignm length: 128
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 26

Show alignments to all cow chromosomes.