Cow genome map
| Conread name: | rspc031_h17.y1 |
| Conread position: | 1-368 |
| Cow position: | chr11:32682719-32683101 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 2-245 |
| Cow position: | chr11:30304325-30304573 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 2-286 |
| Cow position: | chr11:56178968-56179244 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-378 |
| Cow position: | chr11:44496541-44496161 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 117 |
| Conread position: | 2-383 |
| Cow position: | chr11:8262656-8262271 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 2-384 |
| Cow position: | chr11:8888097-8887726 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 2-384 |
| Cow position: | chr11:25526645-25527001 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 2-384 |
| Cow position: | chr11:28062714-28063114 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 301 |
| Conread position: | 2-384 |
| Cow position: | chr11:52462113-52462520 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 308 |
| Conread position: | 3-242 |
| Cow position: | chr11:40779602-40779360 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 3-342 |
| Cow position: | chr11:52418409-52418774 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 3-360 |
| Cow position: | chr11:30126247-30125896 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 3-365 |
| Cow position: | chr11:4271794-4271423 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 3-384 |
| Cow position: | chr11:12359377-12358998 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 125 |
| Conread position: | 3-384 |
| Cow position: | chr11:19065244-19064826 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 320 |
| Conread position: | 3-384 |
| Cow position: | chr11:24392369-24392750 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 3-384 |
| Cow position: | chr11:26125890-26125504 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 3-384 |
| Cow position: | chr11:41171633-41171269 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 123 |
| Conread position: | 3-384 |
| Cow position: | chr11:53432724-53432345 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 122 |
| Conread position: | 3-384 |
| Cow position: | chr11:54208666-54209051 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-384 |
| Cow position: | chr11:57629028-57628623 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 3-384 |
| Cow position: | chr11:67847554-67847143 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 18, 313 |
| Conread position: | 3-384 |
| Cow position: | chr11:85394767-85394385 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 4-382 |
| Cow position: | chr11:24677111-24677479 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 6-283 |
| Cow position: | chr11:25181888-25182160 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 7-381 |
| Cow position: | chr11:10210916-10210538 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 11-237 |
| Cow position: | chr11:75919608-75919840 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 17-219 |
| Cow position: | chr11:75132588-75132794 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 17-220 |
| Cow position: | chr11:21466167-21466372 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 17-375 |
| Cow position: | chr11:24242512-24242861 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 17-379 |
| Cow position: | chr11:7112508-7112876 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 17-381 |
| Cow position: | chr11:37492565-37492223 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 17-384 |
| Cow position: | chr11:9660314-9659970 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 17-384 |
| Cow position: | chr11:34019978-34020333 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 17-384 |
| Cow position: | chr11:76375408-76375045 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 19-378 |
| Cow position: | chr11:7686958-7687332 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 19-380 |
| Cow position: | chr11:9220955-9220595 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 19-383 |
| Cow position: | chr11:44507241-44507595 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 21-271 |
| Cow position: | chr11:7073541-7073300 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 24-384 |
| Cow position: | chr11:12092822-12093185 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 27-381 |
| Cow position: | chr11:38836348-38835996 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-382 |
| Cow position: | chr11:23876373-23876726 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 27-382 |
| Cow position: | chr11:43515584-43515207 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-383 |
| Cow position: | chr11:10846522-10846868 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 27-383 |
| Cow position: | chr11:71328715-71329065 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr11:4028478-4028126 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 11 |
| Conread position: | 27-384 |
| Cow position: | chr11:19103417-19103062 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr11:29669556-29669205 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 27-384 |
| Cow position: | chr11:58133425-58133783 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 28-384 |
| Cow position: | chr11:15997983-15998316 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 90 |
| Conread position: | 35-384 |
| Cow position: | chr11:37093985-37093638 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 90 |
| Conread position: | 38-382 |
| Cow position: | chr11:25180175-25180500 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 38-384 |
| Cow position: | chr11:77729442-77729102 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 41-374 |
| Cow position: | chr11:9158327-9158000 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 43-314 |
| Cow position: | chr11:12352199-12351940 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 73 |
| Conread position: | 44-384 |
| Cow position: | chr11:7394214-7394540 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 106, 40 |
| Conread position: | 50-330 |
| Cow position: | chr11:8243799-8244073 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 191, 66 |
| Conread position: | 50-382 |
| Cow position: | chr11:11987213-11987541 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 73 |
| Conread position: | 54-375 |
| Cow position: | chr11:72110861-72110544 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 69 |
| Conread position: | 64-384 |
| Cow position: | chr11:28055483-28055170 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 173, 17 |
| Conread position: | 95-380 |
| Cow position: | chr11:33044978-33044701 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 115-383 |
| Cow position: | chr11:31925357-31925623 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 123 |
| Conread position: | 154-384 |
| Cow position: | chr11:20921560-20921322 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 154-384 |
| Cow position: | chr11:36744991-36744753 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 154-384 |
| Cow position: | chr11:39799087-39798849 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 154-384 |
| Cow position: | chr11:52530224-52530453 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 161-348 |
| Cow position: | chr11:9736750-9736557 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 118 |
| Conread position: | 161-369 |
| Cow position: | chr11:15982841-15983055 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 70, 132 |
| Conread position: | 161-370 |
| Cow position: | chr11:45110332-45110544 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 161-376 |
| Cow position: | chr11:4041864-4041649 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 161-377 |
| Cow position: | chr11:3492210-3492437 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 161-378 |
| Cow position: | chr11:28230547-28230324 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 128 |
| Conread position: | 161-382 |
| Cow position: | chr11:67449690-67449915 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 161-384 |
| Cow position: | chr11:32450064-32450291 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 161-384 |
| Cow position: | chr11:37477920-37477693 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 77, 122 |
| Conread position: | 172-375 |
| Cow position: | chr11:1496854-1496642 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 59, 115 |
| Conread position: | 184-381 |
| Cow position: | chr11:9607443-9607249 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 158, 52 |
| Conread position: | 193-384 |
| Cow position: | chr11:30126001-30125812 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 219-384 |
| Cow position: | chr11:40777471-40777308 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 19 |
| Conread position: | 223-380 |
| Cow position: | chr11:66725772-66725925 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 229-381 |
| Cow position: | chr11:44157963-44157812 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 113, 11 |
| Conread position: | 236-384 |
| Cow position: | chr11:33195336-33195188 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 50 |
| Conread position: | 257-383 |
| Cow position: | chr11:7073167-7073049 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 258-378 |
| Cow position: | chr11:21466381-21466501 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 26 |
Show alignments to all cow chromosomes.