Cow genome map
| Conread name: | rspc031_h17.y1 |
| Conread position: | 2-225 |
| Cow position: | chr13:34935967-34936195 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 2-245 |
| Cow position: | chr13:33928408-33928174 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 2-381 |
| Cow position: | chr13:34187574-34187201 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 2-381 |
| Cow position: | chr13:61951303-61951678 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 2-382 |
| Cow position: | chr13:34143524-34143170 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 273 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 3-380 |
| Cow position: | chr13:32544062-32544434 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 126 |
| Conread position: | 3-381 |
| Cow position: | chr13:33337210-33336836 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 3-382 |
| Cow position: | chr13:21841119-21840708 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 315 |
| Conread position: | 3-384 |
| Cow position: | chr13:15521413-15521024 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 3-384 |
| Cow position: | chr13:15925277-15924893 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 3-384 |
| Cow position: | chr13:30245649-30245244 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 283 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 3-384 |
| Cow position: | chr13:30657837-30657471 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 3-384 |
| Cow position: | chr13:34326581-34326186 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 6-329 |
| Cow position: | chr13:15081056-15080735 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 6-384 |
| Cow position: | chr13:20543242-20542871 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 94 |
| Conread position: | 7-180 |
| Cow position: | chr13:34867857-34868030 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 12-373 |
| Cow position: | chr13:34768086-34767745 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 8, 75 |
| Conread position: | 13-367 |
| Cow position: | chr13:47859458-47859797 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 5, 114 |
| Conread position: | 17-283 |
| Cow position: | chr13:34692310-34692585 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 17-382 |
| Cow position: | chr13:3276291-3276647 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 222 |
| Conread position: | 17-383 |
| Cow position: | chr13:62328445-62328091 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 17-384 |
| Cow position: | chr13:2909306-2908954 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 19-371 |
| Cow position: | chr13:2231821-2232150 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 21-378 |
| Cow position: | chr13:48356459-48356817 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 70 |
| Conread position: | 21-384 |
| Cow position: | chr13:4940215-4940576 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 27-300 |
| Cow position: | chr13:9043667-9043933 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 27-309 |
| Cow position: | chr13:11765043-11764758 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 110, 11 |
| Conread position: | 27-383 |
| Cow position: | chr13:31613200-31612846 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-383 |
| Cow position: | chr13:32738672-32738330 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 27-384 |
| Cow position: | chr13:1594020-1593665 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 27-384 |
| Cow position: | chr13:15542601-15542955 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr13:30302208-30302562 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 27-384 |
| Cow position: | chr13:34043227-34042875 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr13:35756370-35756721 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 38-235 |
| Cow position: | chr13:58716153-58716340 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 38-384 |
| Cow position: | chr13:6668994-6668634 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 38-384 |
| Cow position: | chr13:13046649-13046330 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 253 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 112, 50 |
| Conread position: | 43-293 |
| Cow position: | chr13:31831773-31832024 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 50-375 |
| Cow position: | chr13:3655147-3654825 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 73 |
| Conread position: | 54-384 |
| Cow position: | chr13:33825564-33825247 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 63-376 |
| Cow position: | chr13:54283763-54284073 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 104-381 |
| Cow position: | chr13:4481698-4481963 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 238, 7 |
| Conread position: | 118-384 |
| Cow position: | chr13:676186-676455 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 110, 29 |
| Conread position: | 136-373 |
| Cow position: | chr13:35029766-35030002 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 154-343 |
| Cow position: | chr13:51763880-51764076 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 154-384 |
| Cow position: | chr13:53834024-53834262 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 161-342 |
| Cow position: | chr13:13324071-13324250 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 161-381 |
| Cow position: | chr13:17307746-17307971 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 161-381 |
| Cow position: | chr13:31734811-31734587 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 70, 130 |
| Conread position: | 161-382 |
| Cow position: | chr13:34868032-34868260 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 69, 131 |
| Conread position: | 161-383 |
| Cow position: | chr13:2297530-2297309 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 161-384 |
| Cow position: | chr13:2389535-2389307 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 70, 130 |
| Conread position: | 161-384 |
| Cow position: | chr13:32986781-32986556 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 161-384 |
| Cow position: | chr13:49972976-49973207 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 173-384 |
| Cow position: | chr13:50108740-50108956 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 192-380 |
| Cow position: | chr13:41607010-41607196 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 87 |
| Conread position: | 215-381 |
| Cow position: | chr13:34936460-34936627 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 226-381 |
| Cow position: | chr13:34912032-34911877 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 59 |
Show alignments to all cow chromosomes.