Cow genome map

Conread name: rspc031_h17.y1

Conread position: 1-384
Cow position: chr14:45712970-45712614 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 269
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 18, 83

Conread position: 2-225
Cow position: chr14:42403882-42404109 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 42, 116

Conread position: 2-232
Cow position: chr14:7831523-7831294 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 10

Conread position: 2-300
Cow position: chr14:47623585-47623870 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 23, 117

Conread position: 2-383
Cow position: chr14:44225388-44225781 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 296

Conread position: 2-384
Cow position: chr14:11155172-11154787 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 128

Conread position: 2-384
Cow position: chr14:13660983-13660625 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 275
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 17, 10

Conread position: 2-384
Cow position: chr14:41085794-41085441 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 10

Conread position: 2-384
Cow position: chr14:44129939-44130293 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 17, 82

Conread position: 3-343
Cow position: chr14:9044436-9044782 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 25

Conread position: 3-380
Cow position: chr14:17684386-17684762 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 126

Conread position: 3-383
Cow position: chr14:11467598-11467966 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 261
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 39, 16

Conread position: 3-384
Cow position: chr14:46083615-46083993 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 67

Conread position: 4-271
Cow position: chr14:45304645-45304374 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 77

Conread position: 5-380
Cow position: chr14:45159831-45160227 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 300

Conread position: 5-383
Cow position: chr14:44376415-44376803 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 6

Conread position: 6-384
Cow position: chr14:13302019-13302397 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 118

Conread position: 7-384
Cow position: chr14:40338685-40339076 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 118

Conread position: 7-384
Cow position: chr14:45916363-45916767 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 275
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 128

Conread position: 10-371
Cow position: chr14:46463789-46464158 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 96

Conread position: 17-175
Cow position: chr14:45850278-45850437 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 32, 97

Conread position: 17-384
Cow position: chr14:38145632-38146006 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 245
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 131

Conread position: 17-384
Cow position: chr14:45767032-45767370 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 254
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 25, 101

Conread position: 19-384
Cow position: chr14:44856407-44856059 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 25, 46

Conread position: 21-384
Cow position: chr14:35388128-35387768 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 19

Conread position: 22-382
Cow position: chr14:38533294-38532934 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 21

Conread position: 23-384
Cow position: chr14:37222908-37223268 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 103

Conread position: 25-235
Cow position: chr14:13777829-13778030 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 84

Conread position: 27-235
Cow position: chr14:16920723-16920523 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 87

Conread position: 27-308
Cow position: chr14:15277818-15277547 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 192
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 99

Conread position: 27-371
Cow position: chr14:45833175-45833511 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 98

Conread position: 27-378
Cow position: chr14:20781470-20781819 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-381
Cow position: chr14:16274286-16273934 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr14:5528078-5528433 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr14:7471387-7471742 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr14:19329255-19328900 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr14:22032667-22032316 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 92

Conread position: 27-384
Cow position: chr14:28994847-28994489 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 71

Conread position: 27-384
Cow position: chr14:48255301-48254946 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 78

Conread position: 27-384
Cow position: chr14:50109600-50109946 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 252
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 23, 99

Conread position: 28-376
Cow position: chr14:35928198-35928540 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 167, 13

Conread position: 28-383
Cow position: chr14:23691205-23690861 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 90

Conread position: 38-365
Cow position: chr14:41406866-41407209 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 62

Conread position: 38-380
Cow position: chr14:13272278-13272625 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 79

Conread position: 38-381
Cow position: chr14:44551071-44551418 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 78

Conread position: 38-381
Cow position: chr14:44780888-44780548 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 238
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 111, 60

Conread position: 38-381
Cow position: chr14:44783228-44782888 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 238
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 111, 60

Conread position: 38-383
Cow position: chr14:17002024-17001690 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 248
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 193, 112

Conread position: 42-375
Cow position: chr14:22018427-22018759 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 18, 13

Conread position: 50-384
Cow position: chr14:41754909-41755240 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 65

Conread position: 53-384
Cow position: chr14:50133943-50134278 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 70

Conread position: 59-366
Cow position: chr14:44685074-44685396 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 235
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 95, 64

Conread position: 82-382
Cow position: chr14:36967335-36967622 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 13, 38

Conread position: 118-382
Cow position: chr14:30585841-30585573 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 113, 29

Conread position: 118-384
Cow position: chr14:2283088-2283354 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 110, 29

Conread position: 151-384
Cow position: chr14:47623706-47623936 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 89, 41

Conread position: 154-384
Cow position: chr14:45672915-45672679 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 135

Conread position: 155-384
Cow position: chr14:45850373-45850594 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 41

Conread position: 161-378
Cow position: chr14:749714-749936 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 130

Conread position: 161-380
Cow position: chr14:17241378-17241602 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 70, 131

Conread position: 161-382
Cow position: chr14:17492314-17492090 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 131

Conread position: 161-384
Cow position: chr14:10561769-10561998 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 72, 130

Conread position: 161-384
Cow position: chr14:30597236-30597002 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 60, 128

Conread position: 161-384
Cow position: chr14:33394666-33394437 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 70, 131

Conread position: 204-381
Cow position: chr14:40170495-40170316 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 35, 83

Conread position: 215-375
Cow position: chr14:45079732-45079894 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 22, 72

Conread position: 232-384
Cow position: chr14:1499968-1500119 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 109, 14

Show alignments to all cow chromosomes.