Cow genome map

Conread name: rspc031_h17.y1

Conread position: 1-342
Cow position: chr16:5588839-5589178 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 225
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 40, 16

Conread position: 2-170
Cow position: chr16:28234012-28233850 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 107

Conread position: 2-223
Cow position: chr16:15368925-15369145 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 17, 97

Conread position: 2-377
Cow position: chr16:39818276-39818638 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 10

Conread position: 2-384
Cow position: chr16:1429859-1430248 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 123

Conread position: 2-384
Cow position: chr16:19714194-19713827 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 10

Conread position: 3-225
Cow position: chr16:7483122-7483338 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 16, 78

Conread position: 3-378
Cow position: chr16:18688485-18688103 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 3-381
Cow position: chr16:25340596-25340989 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 190

Conread position: 3-384
Cow position: chr16:25084261-25084642 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 95

Conread position: 3-384
Cow position: chr16:40297536-40297154 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 111

Conread position: 4-384
Cow position: chr16:49257956-49257543 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 122

Conread position: 6-377
Cow position: chr16:16029421-16029776 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 238
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 114

Conread position: 6-384
Cow position: chr16:29031562-29031937 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 70

Conread position: 7-220
Cow position: chr16:34527389-34527604 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 113

Conread position: 12-194
Cow position: chr16:5888113-5888299 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 30, 107

Conread position: 12-267
Cow position: chr16:44673649-44673912 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 107

Conread position: 12-271
Cow position: chr16:49955859-49955611 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 10, 69

Conread position: 14-171
Cow position: chr16:25152491-25152649 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 27, 70

Conread position: 17-272
Cow position: chr16:36282079-36282326 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 101

Conread position: 17-384
Cow position: chr16:7905319-7905664 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 265
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 27, 103

Conread position: 17-384
Cow position: chr16:11051852-11052194 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 323, 99

Conread position: 17-384
Cow position: chr16:20255642-20255286 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 17-384
Cow position: chr16:29676640-29676284 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 101

Conread position: 19-283
Cow position: chr16:334647-334911 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 200
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 25

Conread position: 19-379
Cow position: chr16:36232944-36232582 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 21-384
Cow position: chr16:25458815-25458454 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 98

Conread position: 23-384
Cow position: chr16:2728653-2728292 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 82

Conread position: 27-272
Cow position: chr16:23981846-23982089 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 21, 101

Conread position: 27-276
Cow position: chr16:26661344-26661589 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 76

Conread position: 27-332
Cow position: chr16:29045697-29045999 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 23, 98

Conread position: 27-342
Cow position: chr16:2412349-2412039 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 23, 98

Conread position: 27-374
Cow position: chr16:16687536-16687878 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 57

Conread position: 27-375
Cow position: chr16:51083236-51083583 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 98

Conread position: 27-380
Cow position: chr16:2484471-2484120 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 98

Conread position: 27-384
Cow position: chr16:408364-408011 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 53

Conread position: 27-384
Cow position: chr16:1568777-1568429 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 78

Conread position: 27-384
Cow position: chr16:7677028-7676673 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr16:9776803-9777152 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr16:10204750-10204394 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 82

Conread position: 27-384
Cow position: chr16:12539257-12538904 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 27-384
Cow position: chr16:28472430-28472075 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 90

Conread position: 29-379
Cow position: chr16:25440284-25440630 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 96

Conread position: 38-239
Cow position: chr16:12302778-12302576 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 80, 155

Conread position: 38-374
Cow position: chr16:29981951-29982287 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 243
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 113, 40

Conread position: 38-378
Cow position: chr16:32934818-32935163 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 245
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 112, 22

Conread position: 38-383
Cow position: chr16:49236436-49236093 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 22

Conread position: 44-342
Cow position: chr16:54647030-54647311 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 200
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 50-384
Cow position: chr16:14667097-14666767 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 53

Conread position: 50-384
Cow position: chr16:15183498-15183827 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 65

Conread position: 50-384
Cow position: chr16:15565444-15565771 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 61

Conread position: 60-327
Cow position: chr16:37446646-37446390 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 63, 0

Conread position: 60-376
Cow position: chr16:42051647-42051330 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 66

Conread position: 119-384
Cow position: chr16:5918232-5918506 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 116, 23

Conread position: 119-384
Cow position: chr16:43898509-43898248 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 115, 31

Conread position: 133-383
Cow position: chr16:31593142-31592886 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 11, 51

Conread position: 144-384
Cow position: chr16:31538-31780 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 104, 94

Conread position: 152-384
Cow position: chr16:9929345-9929577 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 82, 14

Conread position: 154-384
Cow position: chr16:21185064-21185302 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 9, 139

Conread position: 154-384
Cow position: chr16:32605608-32605848 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 64

Conread position: 157-384
Cow position: chr16:10437048-10437278 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 41, 131

Conread position: 159-384
Cow position: chr16:24881899-24881666 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 134

Conread position: 161-378
Cow position: chr16:5660666-5660882 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 181, 77

Conread position: 161-379
Cow position: chr16:28171568-28171347 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 119

Conread position: 161-384
Cow position: chr16:6942414-6942643 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 70, 130

Conread position: 161-384
Cow position: chr16:23253706-23253482 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 76, 19

Conread position: 162-382
Cow position: chr16:25157419-25157199 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 89

Conread position: 162-384
Cow position: chr16:15491515-15491728 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 180, 18

Conread position: 177-378
Cow position: chr16:31376413-31376212 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 20

Conread position: 224-381
Cow position: chr16:42740554-42740399 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 118, 24

Conread position: 227-384
Cow position: chr16:26662619-26662771 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 114, 33

Conread position: 228-384
Cow position: chr16:15369304-15369459 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 9, 60

Conread position: 252-384
Cow position: chr16:6549632-6549500 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 90, 34

Show alignments to all cow chromosomes.