Cow genome map
| Conread name: | rspc031_h17.y1 |
| Conread position: | 2-237 |
| Cow position: | chr17:455638-455399 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 2-256 |
| Cow position: | chr17:16889380-16889642 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 2-376 |
| Cow position: | chr17:31200854-31200477 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 3-378 |
| Cow position: | chr17:2261306-2261708 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 3-378 |
| Cow position: | chr17:15144175-15143772 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 313 |
| Conread position: | 3-378 |
| Cow position: | chr17:15157762-15157361 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 18, 309 |
| Conread position: | 3-384 |
| Cow position: | chr17:6258923-6259301 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 3-384 |
| Cow position: | chr17:24780238-24780645 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 4-383 |
| Cow position: | chr17:15370313-15370676 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 7-271 |
| Cow position: | chr17:3694450-3694185 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 8-384 |
| Cow position: | chr17:2587546-2587920 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 116 |
| Conread position: | 17-241 |
| Cow position: | chr17:18186966-18186751 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 17-384 |
| Cow position: | chr17:1284518-1284160 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 102 |
| Conread position: | 17-384 |
| Cow position: | chr17:2286622-2286974 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 17-384 |
| Cow position: | chr17:4059339-4059704 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 38 |
| Conread position: | 17-384 |
| Cow position: | chr17:22430222-22429884 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 17-384 |
| Cow position: | chr17:23857783-23857444 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 325, 86 |
| Conread position: | 17-384 |
| Cow position: | chr17:32024941-32024598 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 18-243 |
| Cow position: | chr17:27345054-27345285 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 19-245 |
| Cow position: | chr17:44853663-44853444 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 25, 99 |
| Conread position: | 19-248 |
| Cow position: | chr17:35591484-35591710 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 19-384 |
| Cow position: | chr17:1945429-1945775 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 105 |
| Conread position: | 19-384 |
| Cow position: | chr17:4080879-4081250 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 20-383 |
| Cow position: | chr17:20400925-20401271 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 21-245 |
| Cow position: | chr17:15417086-15417311 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 27-383 |
| Cow position: | chr17:3643580-3643239 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-383 |
| Cow position: | chr17:11088488-11088124 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 27-384 |
| Cow position: | chr17:13857543-13857176 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 27-384 |
| Cow position: | chr17:15322079-15322428 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr17:18104438-18104083 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 27-384 |
| Cow position: | chr17:19270104-19269767 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 38-384 |
| Cow position: | chr17:153199-152860 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 112, 58 |
| Conread position: | 38-384 |
| Cow position: | chr17:16860316-16859972 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 85 |
| Conread position: | 50-177 |
| Cow position: | chr17:248948-249077 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 97, 73 |
| Conread position: | 50-375 |
| Cow position: | chr17:2578832-2579149 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 74 |
| Conread position: | 50-384 |
| Cow position: | chr17:40803660-40804003 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 57 |
| Conread position: | 63-377 |
| Cow position: | chr17:13928962-13929265 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 174, 60 |
| Conread position: | 68-384 |
| Cow position: | chr17:2249299-2248984 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 163, 61 |
| Conread position: | 70-380 |
| Cow position: | chr17:14326195-14325900 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 96-382 |
| Cow position: | chr17:22131273-22131536 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 150-373 |
| Cow position: | chr17:249286-249515 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 88, 137 |
| Conread position: | 154-384 |
| Cow position: | chr17:22160275-22160513 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 139 |
| Conread position: | 154-384 |
| Cow position: | chr17:24633316-24633554 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 9, 127 |
| Conread position: | 161-375 |
| Cow position: | chr17:180992-181205 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 181, 77 |
| Conread position: | 161-384 |
| Cow position: | chr17:1383443-1383214 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 118 |
| Conread position: | 161-384 |
| Cow position: | chr17:8208478-8208708 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 70, 133 |
| Conread position: | 161-384 |
| Cow position: | chr17:9654081-9653852 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 70, 130 |
| Conread position: | 161-384 |
| Cow position: | chr17:11782739-11782968 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 161-384 |
| Cow position: | chr17:14217657-14217427 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 161-384 |
| Cow position: | chr17:14893533-14893754 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 161-384 |
| Cow position: | chr17:20666352-20666129 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 181, 124 |
| Conread position: | 161-384 |
| Cow position: | chr17:43987888-43988114 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 66, 134 |
| Conread position: | 162-382 |
| Cow position: | chr17:6119520-6119745 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 69, 127 |
| Conread position: | 184-384 |
| Cow position: | chr17:31768879-31768673 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 47, 108 |
| Conread position: | 208-384 |
| Cow position: | chr17:25737088-25737261 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 134, 9 |
| Conread position: | 237-384 |
| Cow position: | chr17:15435245-15435390 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 261-375 |
| Cow position: | chr17:28109570-28109684 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 26 |
Show alignments to all cow chromosomes.