Cow genome map
| Conread name: | rspc031_h17.y1 |
| Conread position: | 1-237 |
| Cow position: | chr18:17993318-17993081 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 2-383 |
| Cow position: | chr18:53784930-53785283 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 273 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 2-384 |
| Cow position: | chr18:1520580-1520935 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 3-227 |
| Cow position: | chr18:54172644-54172421 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 3-271 |
| Cow position: | chr18:32651374-32651643 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 3-285 |
| Cow position: | chr18:40477569-40477851 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 15, 125 |
| Conread position: | 3-373 |
| Cow position: | chr18:11275687-11275294 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 3-377 |
| Cow position: | chr18:35287684-35288059 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 3-381 |
| Cow position: | chr18:16078100-16078505 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 284 |
| Conread position: | 3-381 |
| Cow position: | chr18:19351769-19352182 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 384 |
| Conread position: | 3-381 |
| Cow position: | chr18:25349467-25349841 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 3-384 |
| Cow position: | chr18:16660584-16660199 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 3-384 |
| Cow position: | chr18:29236193-29236584 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 7-257 |
| Cow position: | chr18:54001896-54002152 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 7-384 |
| Cow position: | chr18:55089528-55089123 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 14, 225 |
| Conread position: | 10-384 |
| Cow position: | chr18:33335297-33335677 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 117 |
| Conread position: | 12-372 |
| Cow position: | chr18:29762915-29763279 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 12-384 |
| Cow position: | chr18:32293225-32293580 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 7, 202 |
| Conread position: | 16-384 |
| Cow position: | chr18:35334936-35335290 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 102 |
| Conread position: | 17-220 |
| Cow position: | chr18:2020450-2020244 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 17-233 |
| Cow position: | chr18:30198113-30198332 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 17-244 |
| Cow position: | chr18:39748039-39748270 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 17-382 |
| Cow position: | chr18:43147472-43147122 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 17-384 |
| Cow position: | chr18:33358315-33358673 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 17-384 |
| Cow position: | chr18:51257449-51257788 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 19-349 |
| Cow position: | chr18:43200235-43200564 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 106 |
| Conread position: | 21-283 |
| Cow position: | chr18:27986363-27986624 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 24-368 |
| Cow position: | chr18:6869950-6869632 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 25-384 |
| Cow position: | chr18:16177165-16176801 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 27-372 |
| Cow position: | chr18:54024916-54024562 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 27-384 |
| Cow position: | chr18:28974447-28974093 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr18:36507783-36508138 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 27-384 |
| Cow position: | chr18:41841375-41841020 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 40-315 |
| Cow position: | chr18:33268349-33268627 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 70 |
| Conread position: | 48-384 |
| Cow position: | chr18:48221373-48221683 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 68 |
| Conread position: | 49-384 |
| Cow position: | chr18:23944876-23944566 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 101, 67 |
| Conread position: | 50-372 |
| Cow position: | chr18:23797126-23797444 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 74 |
| Conread position: | 50-384 |
| Cow position: | chr18:14129770-14130099 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 73 |
| Conread position: | 53-381 |
| Cow position: | chr18:27838819-27838501 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 70 |
| Conread position: | 59-384 |
| Cow position: | chr18:37504550-37504870 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 64 |
| Conread position: | 71-384 |
| Cow position: | chr18:51480336-51480645 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 170, 53 |
| Conread position: | 154-384 |
| Cow position: | chr18:23746405-23746167 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 154-384 |
| Cow position: | chr18:37586096-37585858 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 161-379 |
| Cow position: | chr18:51660003-51660224 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 128 |
| Conread position: | 161-383 |
| Cow position: | chr18:44621334-44621561 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 69, 129 |
| Conread position: | 161-384 |
| Cow position: | chr18:47741594-47741823 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 70, 130 |
| Conread position: | 170-378 |
| Cow position: | chr18:54002090-54002301 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 248-384 |
| Cow position: | chr18:14415648-14415784 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 252-384 |
| Cow position: | chr18:47719896-47719764 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 260-384 |
| Cow position: | chr18:17992880-17992756 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 82, 25 |
| Conread position: | 261-384 |
| Cow position: | chr18:40478067-40478188 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 265-384 |
| Cow position: | chr18:32651682-32651801 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 77, 20 |
Show alignments to all cow chromosomes.