Cow genome map
| Conread name: | rspc031_h17.y1 |
| Conread position: | 2-218 |
| Cow position: | chr21:34292317-34292533 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 2-231 |
| Cow position: | chr21:3614827-3615050 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 2-282 |
| Cow position: | chr21:4455599-4455874 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 2-372 |
| Cow position: | chr21:2542374-2541998 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 2-379 |
| Cow position: | chr21:4223162-4222801 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 2-381 |
| Cow position: | chr21:35595895-35596263 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 2-384 |
| Cow position: | chr21:2530605-2530241 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 2-384 |
| Cow position: | chr21:2884231-2883849 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 2-384 |
| Cow position: | chr21:3426018-3426369 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 3-204 |
| Cow position: | chr21:23809274-23809480 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 165 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 3-381 |
| Cow position: | chr21:33250897-33251274 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 3-384 |
| Cow position: | chr21:145429-145805 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 3-384 |
| Cow position: | chr21:2510130-2510537 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 18, 313 |
| Conread position: | 3-384 |
| Cow position: | chr21:12056518-12056112 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 3-384 |
| Cow position: | chr21:47938995-47939364 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 6-378 |
| Cow position: | chr21:4590459-4590080 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 6-384 |
| Cow position: | chr21:358532-358902 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 7-372 |
| Cow position: | chr21:48115617-48115981 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 102 |
| Conread position: | 7-380 |
| Cow position: | chr21:1190550-1190923 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 11-380 |
| Cow position: | chr21:5016546-5016149 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 8, 303 |
| Conread position: | 12-370 |
| Cow position: | chr21:35089209-35089574 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 76 |
| Conread position: | 13-384 |
| Cow position: | chr21:7268021-7267651 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 80 |
| Conread position: | 17-235 |
| Cow position: | chr21:13124450-13124241 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 164 |
| Conread position: | 17-378 |
| Cow position: | chr21:2415750-2416126 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 17-378 |
| Cow position: | chr21:3798551-3798225 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 52 |
| Conread position: | 17-382 |
| Cow position: | chr21:2717137-2716786 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 17-384 |
| Cow position: | chr21:34259682-34259327 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 19-195 |
| Cow position: | chr21:18820582-18820402 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 19-381 |
| Cow position: | chr21:29086031-29086374 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 99 |
| Conread position: | 21-285 |
| Cow position: | chr21:30560793-30561055 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 27-371 |
| Cow position: | chr21:20745198-20744870 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 27-375 |
| Cow position: | chr21:40272281-40271937 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 27-383 |
| Cow position: | chr21:10566209-10566563 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 28-384 |
| Cow position: | chr21:3778305-3778653 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 38-375 |
| Cow position: | chr21:2769915-2769577 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 85 |
| Conread position: | 41-384 |
| Cow position: | chr21:1292635-1292290 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 106, 76 |
| Conread position: | 43-382 |
| Cow position: | chr21:4076419-4076730 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 298, 70 |
| Conread position: | 50-378 |
| Cow position: | chr21:4183079-4183424 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 188 |
| Conread position: | 50-381 |
| Cow position: | chr21:10849635-10849962 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 73 |
| Conread position: | 52-384 |
| Cow position: | chr21:2501493-2501823 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 98, 71 |
| Conread position: | 53-376 |
| Cow position: | chr21:31560089-31559770 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 71 |
| Conread position: | 59-381 |
| Cow position: | chr21:41952742-41953065 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 103 |
| Conread position: | 119-384 |
| Cow position: | chr21:27708377-27708647 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 23 |
| Conread position: | 154-380 |
| Cow position: | chr21:4090296-4090523 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 140 |
| Conread position: | 154-380 |
| Cow position: | chr21:46915239-46915473 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 135 |
| Conread position: | 161-378 |
| Cow position: | chr21:26638800-26638577 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 161-381 |
| Cow position: | chr21:2454375-2454600 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 131 |
| Conread position: | 161-384 |
| Cow position: | chr21:11505244-11505472 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 161-384 |
| Cow position: | chr21:19609772-19610001 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 161-384 |
| Cow position: | chr21:26819357-26819128 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 70, 126 |
| Conread position: | 161-384 |
| Cow position: | chr21:28529886-28529657 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 203-381 |
| Cow position: | chr21:47947825-47947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 207-384 |
| Cow position: | chr21:4222989-4222811 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 239-384 |
| Cow position: | chr21:3615035-3615179 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 103, 35 |
| Conread position: | 256-384 |
| Cow position: | chr21:9891370-9891496 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 261-381 |
| Cow position: | chr21:34292781-34292901 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 272-384 |
| Cow position: | chr21:2789208-2789096 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 13 |
Show alignments to all cow chromosomes.