Cow genome map
| Conread name: | rspc031_h17.y1 |
| Conread position: | 1-378 |
| Cow position: | chr24:6351615-6351985 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 2-376 |
| Cow position: | chr24:11157204-11156852 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 23, 117 |
| Conread position: | 2-379 |
| Cow position: | chr24:37301630-37301280 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 2-384 |
| Cow position: | chr24:17186989-17187344 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 2-384 |
| Cow position: | chr24:29186224-29186604 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 3-280 |
| Cow position: | chr24:6357433-6357706 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 3-376 |
| Cow position: | chr24:12798339-12797961 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 3-384 |
| Cow position: | chr24:6025711-6025298 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 314 |
| Conread position: | 3-384 |
| Cow position: | chr24:6644803-6645216 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 315 |
| Conread position: | 3-384 |
| Cow position: | chr24:13021089-13021470 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 3-384 |
| Cow position: | chr24:16649892-16649495 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 3-384 |
| Cow position: | chr24:19832800-19833182 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 3-384 |
| Cow position: | chr24:37216137-37216525 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 4-379 |
| Cow position: | chr24:12236471-12236855 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 122 |
| Conread position: | 4-384 |
| Cow position: | chr24:14391302-14390923 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 4-384 |
| Cow position: | chr24:33739956-33739544 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 17, 312 |
| Conread position: | 7-373 |
| Cow position: | chr24:6057107-6057462 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 143, 23 |
| Conread position: | 7-384 |
| Cow position: | chr24:6144782-6145158 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 11-378 |
| Cow position: | chr24:5993571-5993175 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 115 |
| Conread position: | 17-191 |
| Cow position: | chr24:12209135-12208959 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 17-221 |
| Cow position: | chr24:36707062-36707265 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 25, 99 |
| Conread position: | 17-384 |
| Cow position: | chr24:14583547-14583897 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 19-376 |
| Cow position: | chr24:38635181-38635538 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 19-378 |
| Cow position: | chr24:15392875-15392504 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 275 |
| Conread position: | 19-378 |
| Cow position: | chr24:32126050-32125702 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 19-383 |
| Cow position: | chr24:12289287-12288923 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 19-384 |
| Cow position: | chr24:35842155-35841808 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 20-384 |
| Cow position: | chr24:149155-148794 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 21-271 |
| Cow position: | chr24:36560800-36560536 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 21-314 |
| Cow position: | chr24:9544268-9544554 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 104 |
| Conread position: | 26-384 |
| Cow position: | chr24:17314874-17314515 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 27-384 |
| Cow position: | chr24:4416082-4415733 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 37-381 |
| Cow position: | chr24:33932805-33933163 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 113, 86 |
| Conread position: | 38-384 |
| Cow position: | chr24:6335143-6335493 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 78 |
| Conread position: | 38-384 |
| Cow position: | chr24:14385153-14384813 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 199, 85 |
| Conread position: | 41-374 |
| Cow position: | chr24:39677897-39678231 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 79 |
| Conread position: | 42-384 |
| Cow position: | chr24:12161341-12161677 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 43-293 |
| Cow position: | chr24:13532059-13531811 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 104, 188 |
| Conread position: | 118-384 |
| Cow position: | chr24:6433765-6434039 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 115, 29 |
| Conread position: | 150-384 |
| Cow position: | chr24:35839069-35838833 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 151-384 |
| Cow position: | chr24:12085759-12085998 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 140 |
| Conread position: | 154-384 |
| Cow position: | chr24:20267778-20268016 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 154-384 |
| Cow position: | chr24:22792736-22792975 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 136 |
| Conread position: | 154-384 |
| Cow position: | chr24:44017106-44017344 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 161-369 |
| Cow position: | chr24:12224886-12224680 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 72, 101 |
| Conread position: | 161-383 |
| Cow position: | chr24:16085104-16084881 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 161-384 |
| Cow position: | chr24:9189161-9188933 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 162-383 |
| Cow position: | chr24:13181759-13181540 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 172-384 |
| Cow position: | chr24:6083597-6083815 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 190-382 |
| Cow position: | chr24:12114432-12114234 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 102 |
| Conread position: | 203-384 |
| Cow position: | chr24:35991036-35990857 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 261-378 |
| Cow position: | chr24:36560396-36560279 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 83, 24 |
Show alignments to all cow chromosomes.